Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009283

Physical Location & Seq

Genomic Coordinates Forward (+)

23030747 .. 23032411

Gene Structure 1665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTTGTACGTATCAGACTGTCGAGATTTGGATGCAAAAATCGGCCATTTTTTAGGGTTATGGCTGCTGATAGCAGATCTCCAAGAGACGGGAAGCATCTTGAGGTCTTAGGTTACTTCAATCCTTTGCCAGGCCAGGACGGTGGTAAGAGGATGGGTCTCAAGTTCGATCGAATTAAGTACTGGTTATCTGTTGGTGCTCAGCCATCAGACCCGGTTCAACGTCTCCTATTCAGATCCGGTTTACTTCCTCCTCCTCCAATGGTGGCTATGGGACGTAAAGGTGGAGCACGAGACACACGCCCAGTTGATCCGATGACTGGTCGCTATGTGGATGCAGAGAATAAAACAGTTAATGCCAATGATAACCAGCCTAAGGAAGAGGATACAGAAGCCAAGAGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S16

Protein Analysis

135

Amino Acids

15.1

Weight (kDa)

10.13

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S16	PF00886	9 - 70	1.8e-26	Ribosomal protein S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56940
fragaria_vesca	FvH4_1g07750
malus_domestica	MD02G1081900.v1.1 MD15G1209200.v1.1
prunus_persica	Prupe.7G207200_v2.0.a1 Prupe.7G207200_v2.0.a1
pyrus_communis	pycom02g06470 pycom15g18550
rosa_chinensis	RchiOBHm_Chr2g0093641
rosa_laevigata	RLG00000016423
rosa_multiflora	Rmu_sc0002126.1_g000018
rosa_roxburghii	Rroxscaffold_2G00147930
rosa_rugosa	Rorug02G0038200 Rorug02G0038300 Rorug05G0081200 Rorug05G0081200
rosa_samantha	Rh2AG084700 Rh2BG085300 Rh2CG087600 Rh2DG083300 Rh5BG168400
rosa_wichuraiana	Rw2G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	231, 305
AcoI	YGGCCR	1 cut(s)	44
AfaI	GTAC	2 cut(s)	9, 182
AfiI	CCNNNNNNNGG	4 cut(s)	89, 131, 320, 376
AgsI	TTSAA	2 cut(s)	121, 221
AjnI	CCWGG	2 cut(s)	130, 135
Alw21I	GWGCWC	2 cut(s)	202, 292
Alw26I	GTCTC	4 cut(s)	81, 164, 230, 288
AlwI	GGATC	2 cut(s)	231, 305
AoxI	GGCC	2 cut(s)	44, 133
ApeKI	GCWGC	1 cut(s)	65
AsuC2I	CCSGG	1 cut(s)	215
AxyI	CCTNAGG	1 cut(s)	375
BauI	CACGAG	1 cut(s)	291
Bbv12I	GWGCWC	2 cut(s)	202, 292
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	2 cut(s)	148, 214
BciT130I	CCWGG	2 cut(s)	132, 137
BciVI	GTATCC	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	4 cut(s)	81, 164, 230, 288
BfuI	GTATCC	1 cut(s)	379
BglII	AGATCT	1 cut(s)	77
BisI	GCNGC	1 cut(s)	66
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	67
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	3 cut(s)	132, 137, 215
BmrFI	CCNGG	3 cut(s)	132, 137, 215
BmrI	ACTGGG	1 cut(s)	299
BmsI	GCATC	3 cut(s)	23, 106, 325
BmuI	ACTGGG	1 cut(s)	299
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	2 cut(s)	122, 146
BpuMI	CCSGG	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	164
BsaWI	WCCGGW	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 131, 320, 376
Bse1I	ACTGG	3 cut(s)	188, 305, 325
Bse21I	CCTNAGG	1 cut(s)	375
BseBI	CCWGG	2 cut(s)	132, 137
BseGI	GGATG	3 cut(s)	38, 159, 340
BseLI	CCNNNNNNNGG	4 cut(s)	89, 131, 320, 376
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	3 cut(s)	188, 305, 325
BseRI	GAGGAG	2 cut(s)	243, 246
BseXI	GCAGC	1 cut(s)	52
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	2 cut(s)	46, 135
BsiEI	CGRYCG	1 cut(s)	172
BsiHKAI	GWGCWC	2 cut(s)	202, 292
BsiSI	CCGG	2 cut(s)	215, 240
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	4 cut(s)	89, 131, 320, 376
BsmAI	GTCTC	4 cut(s)	81, 164, 230, 288
BsmBI	CGTCTC	2 cut(s)	81, 230
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	2 cut(s)	46, 135
Bso31I	GGTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	202, 292
Bsp143I	GATC	4 cut(s)	77, 169, 236, 310
Bsp1720I	GCTNAGC	1 cut(s)	201
BspANI	GGCC	2 cut(s)	46, 135
BspCNI	CTCAG	1 cut(s)	214
BspPI	GGATC	2 cut(s)	231, 305
BspTNI	GGTCTC	1 cut(s)	164
BsrI	ACTGG	3 cut(s)	188, 305, 325
BssMI	GATC	4 cut(s)	77, 169, 236, 310
BssSI	CACGAG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	132, 137
Bst4CI	ACNGT	3 cut(s)	21, 143, 352
Bst6I	CTCTTC	1 cut(s)	375
BstBAI	YACGTR	1 cut(s)	11
BstDEI	CTNAG	3 cut(s)	109, 201, 375
BstENI	CCTNNNNNAGG	1 cut(s)	129
BstF5I	GGATG	3 cut(s)	38, 159, 340
BstKTI	GATC	4 cut(s)	80, 172, 239, 313
BstMAI	GTCTC	4 cut(s)	81, 164, 230, 288
BstMBI	GATC	4 cut(s)	77, 169, 236, 310
BstMCI	CGRYCG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNI	CCWGG	2 cut(s)	132, 137
BstSCI	CCNGG	3 cut(s)	130, 135, 213
BstSNI	TACGTA	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	52
BstX2I	RGATCY	2 cut(s)	77, 236
BstXI	CCANNNNNNTGG	1 cut(s)	143
BstYI	RGATCY	2 cut(s)	77, 236
Bsu36I	CCTNAGG	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	379
BsuRI	GGCC	2 cut(s)	46, 135
BtsCI	GGATG	3 cut(s)	38, 159, 340
Csp6I	GTAC	2 cut(s)	8, 181
CviAII	CATG	1 cut(s)	405
CviJI	RGCY	7 cut(s)	46, 65, 135, 205, 269, 373, 395
CviKI_1	RGCY	7 cut(s)	46, 65, 135, 205, 269, 373, 395
CviQI	GTAC	2 cut(s)	8, 181
DdeI	CTNAG	3 cut(s)	109, 201, 375
DpnI	GATC	4 cut(s)	79, 171, 238, 312
DpnII	GATC	4 cut(s)	77, 169, 236, 310
EaeI	YGGCCR	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco105I	TACGTA	1 cut(s)	11
Eco31I	GGTCTC	1 cut(s)	164
Eco81I	CCTNAGG	1 cut(s)	375
EcoNI	CCTNNNNNAGG	1 cut(s)	129
EcoRII	CCWGG	2 cut(s)	130, 135
Esp3I	CGTCTC	2 cut(s)	81, 230
FaeI	CATG	1 cut(s)	408
FaiI	YATR	4 cut(s)	62, 272, 330, 406
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	1 cut(s)	404
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	3 cut(s)	45, 166, 347
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	46, 135
HapII	CCGG	2 cut(s)	215, 240
Hin1II	CATG	1 cut(s)	408
HpaII	CCGG	2 cut(s)	215, 240
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	4 cut(s)	17, 211, 236, 315
Hpy188III	TCNNGA	2 cut(s)	24, 101
Hpy8I	GTNNAC	1 cut(s)	245
HpyCH4III	ACNGT	3 cut(s)	21, 143, 352
HpyCH4IV	ACGT	3 cut(s)	10, 223, 277
HpyCH4V	TGCA	3 cut(s)	36, 338, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	3 cut(s)	109, 201, 375
HpySE526I	ACGT	3 cut(s)	10, 223, 277
Hsp92II	CATG	1 cut(s)	408
Kzo9I	GATC	4 cut(s)	77, 169, 236, 310
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	3 cut(s)	23, 106, 325
MaeII	ACGT	3 cut(s)	10, 223, 277
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	4 cut(s)	79, 171, 238, 312
MboI	GATC	4 cut(s)	77, 169, 236, 310
MboII	GAAGA	1 cut(s)	392
MflI	RGATCY	2 cut(s)	77, 236
MhlI	GDGCHC	2 cut(s)	202, 292
MluCI	AATT	1 cut(s)	174
MnlI	CCTC	6 cut(s)	97, 144, 261, 264, 267, 376
MseI	TTAA	2 cut(s)	177, 354
MspI	CCGG	2 cut(s)	215, 240
MspR9I	CCNGG	3 cut(s)	132, 137, 215
MvaI	CCWGG	2 cut(s)	132, 137
MwoI	GCNNNNNNNGC	1 cut(s)	401
NciI	CCSGG	1 cut(s)	215
NdeII	GATC	4 cut(s)	77, 169, 236, 310
NlaIII	CATG	1 cut(s)	408
PkrI	GCNGC	1 cut(s)	67
Ple19I	CGATCG	1 cut(s)	172
Ppu21I	YACGTR	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	130, 135
PspGI	CCWGG	2 cut(s)	130, 135
PsuI	RGATCY	2 cut(s)	77, 236
PvuI	CGATCG	1 cut(s)	172
RsaI	GTAC	2 cut(s)	9, 182
RsaNI	GTAC	2 cut(s)	8, 181
SaqAI	TTAA	2 cut(s)	177, 354
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	4 cut(s)	77, 169, 236, 310
ScaI	AGTACT	1 cut(s)	182
ScrFI	CCNGG	3 cut(s)	132, 137, 215
SduI	GDGCHC	2 cut(s)	202, 292
SetI	ASST	6 cut(s)	13, 108, 115, 226, 280, 286
SfaNI	GCATC	3 cut(s)	23, 106, 325
SmlI	CTYRAG	2 cut(s)	101, 161
SmoI	CTYRAG	2 cut(s)	101, 161
SnaBI	TACGTA	1 cut(s)	11
Sse9I	AATT	1 cut(s)	174
StyD4I	CCNGG	3 cut(s)	130, 135, 213
TaaI	ACNGT	3 cut(s)	21, 143, 352
TaiI	ACGT	3 cut(s)	13, 226, 280
TaqI	TCGA	3 cut(s)	23, 168, 172
TasI	AATT	1 cut(s)	174
TatI	WGTACW	1 cut(s)	180
Tru1I	TTAA	2 cut(s)	177, 354
Tru9I	TTAA	2 cut(s)	177, 354
TseI	GCWGC	1 cut(s)	65
XagI	CCTNNNNNAGG	1 cut(s)	129
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.