Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009283

Physical Location & Seq

Genomic Coordinates Reverse (-)

4510315 .. 4512287

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g06470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGTGGTGAGGATCCGATTGGCGAGGTTCGGATGCAAAAATAGGCCGTTTTATCGGGTCATGGCGGCCAATAGCCGATCTCCGAGAGATGGCAAGCACCTCGAAGTCTTGGGCTACTACAATCCCTTGCCAGGCCAAGATGGTGGAAAACGAATGGGCCTGAACTTTGAAAGAGTGAAGTGTTGGTATGAAAGATGTTCAGAATACGCAAGTCTCTTACAAGATGGTGGAAAACGAATGGGTCTGAACTTTGAAAGAGTGAAGTATTGGCTATCTGTTGGAGCTCAGCCTTCGGATCCTGTGCAGCGTATTCTTTTCAGAGCTGGCCTGTTGCCCCCACCACCAATGGTGGCAATGGGACGTAAGGGAGGGCCACGTGACACGCGACCTGTTGATCCTATGAGTGGACGGTTTGTGACTCCTGAGAAGCCAACAGCTAGTGGTGATCGAGGGAAAGATGTGGAAAGCACTGAAAACGATGGGCAAGAGGGGTTACAGGAAACGATCTTTCATACGGATTGCAGGATAAGCAGCTTGGTATCGGTCAATTCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S16

Protein Analysis

186

Amino Acids

20.75

Weight (kDa)

9.54

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56940
fragaria_vesca	FvH4_1g07750
malus_domestica	MD02G1081900.v1.1 MD15G1209200.v1.1
prunus_persica	Prupe.7G207200_v2.0.a1 Prupe.7G207200_v2.0.a1
pyrus_communis	pycom02g06470 pycom15g18550
rosa_chinensis	RchiOBHm_Chr2g0093641
rosa_laevigata	RLG00000016423
rosa_multiflora	Rmu_sc0002126.1_g000018
rosa_roxburghii	Rroxscaffold_2G00147930
rosa_rugosa	Rorug02G0038200 Rorug02G0038300 Rorug05G0081200 Rorug05G0081200
rosa_samantha	Rh2AG084700 Rh2BG085300 Rh2CG087600 Rh2DG083300 Rh5BG168400
rosa_wichuraiana	Rw2G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	385
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	5 cut(s)	7, 20, 290, 303, 389
AcoI	YGGCCR	1 cut(s)	66
AcvI	CACGTG	1 cut(s)	377
AfiI	CCNNNNNNNGG	3 cut(s)	89, 131, 404
AgsI	TTSAA	2 cut(s)	170, 254
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	4 cut(s)	284, 323, 437, 534
AluI	AGCT	4 cut(s)	284, 323, 437, 534
Alw21I	GWGCWC	1 cut(s)	286
Alw26I	GTCTC	1 cut(s)	218
AlwI	GGATC	5 cut(s)	7, 20, 290, 303, 389
AoxI	GGCC	6 cut(s)	44, 66, 133, 157, 325, 371
ApeKI	GCWGC	2 cut(s)	304, 531
AspS9I	GGNCC	2 cut(s)	157, 371
AsuHPI	GGTGA	2 cut(s)	19, 455
BamHI	GGATCC	2 cut(s)	12, 295
BanII	GRGCYC	1 cut(s)	286
BbrPI	CACGTG	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	2 cut(s)	316, 543
BccI	CCATC	4 cut(s)	83, 134, 218, 473
BceAI	ACGGC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	438
BisI	GCNGC	3 cut(s)	66, 305, 532
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	3 cut(s)	67, 306, 533
Bme1390I	CCNGG	1 cut(s)	132
BmgT120I	GGNCC	2 cut(s)	157, 371
BmiI	GGNNCC	2 cut(s)	14, 297
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	23
Bpu1102I	GCTNAGC	1 cut(s)	285
BsaAI	YACGTR	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 131, 404
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	38
BseLI	CCNNNNNNNGG	3 cut(s)	89, 131, 404
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	2 cut(s)	299, 414
BseXI	GCAGC	2 cut(s)	316, 543
BsgI	GTGCAG	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	385
BshFI	GGCC	6 cut(s)	46, 68, 135, 159, 327, 373
BsiHKAI	GWGCWC	1 cut(s)	286
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	3 cut(s)	89, 131, 404
BsmAI	GTCTC	1 cut(s)	218
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	6 cut(s)	46, 68, 135, 159, 327, 373
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	6 cut(s)	12, 77, 295, 394, 445, 504
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	6 cut(s)	46, 68, 135, 159, 327, 373
BspCNI	CTCAG	2 cut(s)	298, 415
BspFNI	CGCG	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	14, 297
BspPI	GGATC	5 cut(s)	7, 20, 290, 303, 389
BsrDI	GCAATG	1 cut(s)	360
BssMI	GATC	6 cut(s)	12, 77, 295, 394, 445, 504
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	411
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	95, 325
BstDEI	CTNAG	2 cut(s)	285, 423
BstF5I	GGATG	1 cut(s)	38
BstFNI	CGCG	1 cut(s)	385
BstKTI	GATC	6 cut(s)	15, 80, 298, 397, 448, 507
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	6 cut(s)	12, 77, 295, 394, 445, 504
BstMWI	GCNNNNNNNGC	1 cut(s)	528
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstUI	CGCG	1 cut(s)	385
BstV1I	GCAGC	2 cut(s)	316, 543
BstX2I	RGATCY	2 cut(s)	12, 295
BstXI	CCANNNNNNTGG	1 cut(s)	143
BstYI	RGATCY	2 cut(s)	12, 295
BsuRI	GGCC	6 cut(s)	46, 68, 135, 159, 327, 373
BtsCI	GGATG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	2 cut(s)	95, 325
Cfr13I	GGNCC	2 cut(s)	157, 371
CviAII	CATG	1 cut(s)	61
DdeI	CTNAG	2 cut(s)	285, 423
DpnI	GATC	6 cut(s)	14, 79, 297, 396, 447, 506
DpnII	GATC	6 cut(s)	12, 77, 295, 394, 445, 504
EaeI	YGGCCR	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	284
Eco72I	CACGTG	1 cut(s)	377
EcoICRI	GAGCTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	286
FaeI	CATG	1 cut(s)	64
FaiI	YATR	4 cut(s)	62, 189, 401, 513
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	3 cut(s)	66, 305, 532
FokI	GGATG	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	3 cut(s)	66, 305, 532
FspBI	CTAG	1 cut(s)	438
GluI	GCNGC	3 cut(s)	66, 305, 532
HaeIII	GGCC	6 cut(s)	46, 68, 135, 159, 327, 373
Hin1II	CATG	1 cut(s)	64
HinfI	GANTC	1 cut(s)	418
HphI	GGTGA	2 cut(s)	19, 455
Hpy166II	GTNNAC	1 cut(s)	407
Hpy188I	TCNGA	8 cut(s)	17, 32, 84, 202, 246, 295, 320, 553
Hpy188III	TCNNGA	1 cut(s)	422
Hpy8I	GTNNAC	1 cut(s)	407
HpyAV	CCTTC	1 cut(s)	300
HpyCH4III	ACNGT	1 cut(s)	411
HpyCH4IV	ACGT	2 cut(s)	361, 376
HpyCH4V	TGCA	3 cut(s)	36, 304, 522
HpyF10VI	GCNNNNNNNGC	1 cut(s)	528
HpyF3I	CTNAG	2 cut(s)	285, 423
HpySE526I	ACGT	2 cut(s)	361, 376
Hsp92II	CATG	1 cut(s)	64
Kzo9I	GATC	6 cut(s)	12, 77, 295, 394, 445, 504
LmnI	GCTCC	1 cut(s)	281
Lsp1109I	GCAGC	2 cut(s)	316, 543
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	2 cut(s)	361, 376
MaeIII	GTNAC	3 cut(s)	377, 415, 492
MalI	GATC	6 cut(s)	14, 79, 297, 396, 447, 506
MboI	GATC	6 cut(s)	12, 77, 295, 394, 445, 504
MflI	RGATCY	2 cut(s)	12, 295
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	1 cut(s)	547
MlyI	GAGTC	1 cut(s)	412
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	6 cut(s)	3, 18, 110, 362, 443, 481
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	385
MwoI	GCNNNNNNNGC	1 cut(s)	528
NdeII	GATC	6 cut(s)	12, 77, 295, 394, 445, 504
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	2 cut(s)	14, 297
NmuCI	GTSAC	2 cut(s)	377, 415
PcsI	WCGNNNNNNNCGW	1 cut(s)	382
PkrI	GCNGC	3 cut(s)	67, 306, 533
PleI	GAGTC	1 cut(s)	412
PmaCI	CACGTG	1 cut(s)	377
PmlI	CACGTG	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	412
Ppu21I	YACGTR	1 cut(s)	377
Psp124BI	GAGCTC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	130
PspCI	CACGTG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	14, 297
PspPI	GGNCC	2 cut(s)	157, 371
PsuI	RGATCY	2 cut(s)	12, 295
SacI	GAGCTC	1 cut(s)	286
SatI	GCNGC	3 cut(s)	66, 305, 532
Sau3AI	GATC	6 cut(s)	12, 77, 295, 394, 445, 504
Sau96I	GGNCC	2 cut(s)	157, 371
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	9 cut(s)	29, 102, 286, 325, 364, 379, 391, 439, 536
SfaNI	GCATC	1 cut(s)	23
Sse9I	AATT	1 cut(s)	547
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	438
SstI	GAGCTC	1 cut(s)	286
StyD4I	CCNGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	411
TaiI	ACGT	2 cut(s)	364, 379
TaqI	TCGA	2 cut(s)	102, 448
TaqII	GACCGA	1 cut(s)	532
TasI	AATT	1 cut(s)	547
TauI	GCSGC	1 cut(s)	68
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	2 cut(s)	377, 415
TseI	GCWGC	2 cut(s)	304, 531
Tsp45I	GTSAC	2 cut(s)	377, 415
TspDTI	ATGAA	2 cut(s)	204, 500
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	1 cut(s)	475
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.