Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009283

Physical Location & Seq

Genomic Coordinates Forward (+)

19067997 .. 19070556

Gene Structure 2560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G207200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTGGTGAGGATACGATTGGCAAGGTTCGGATGCAAAAACAGGCCGTTCTATCGGGTCATGGCGGCCGATAGCCGATCTCCTAGAGACGGCAAGCACCTCGAAGTCTTGGGTTACTACAATCCCTTGCCAGGCCAAGATGGTGGCAAACGAATGGGTCTAAACTTTGAAAGAGTGAAGTATTGGCTATCTGTTGGAGCTCAGCCCTCAGATCCTGTGCAGCGCATTCTTTTCAGAGCAGGGTTGTTACCTCCACCGCCAATGGTGGCAATGGGACGTAAGGGTGGGCCACGTGACACACGGCCTGTAGATCCTTTGAGTGGAAGAATTTTGAGTCCTGAGAAGCCAGCTAATGGTGATCAAGTGAAAGATGCGGAAAGCACTGAAAATGGGCAACGGGGTTTGCAAGAAACAATCTTACATATCGGATTGCAGGATAAGCAGCTTGGTGTCGGTCAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S16

Protein Analysis

155

Amino Acids

17.06

Weight (kDa)

10.13

Isoelectric Point (pI)

49.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56940
fragaria_vesca	FvH4_1g07750
malus_domestica	MD02G1081900.v1.1 MD15G1209200.v1.1
prunus_persica	Prupe.7G207200_v2.0.a1 Prupe.7G207200_v2.0.a1
pyrus_communis	pycom02g06470 pycom15g18550
rosa_chinensis	RchiOBHm_Chr2g0093641
rosa_laevigata	RLG00000016423
rosa_multiflora	Rmu_sc0002126.1_g000018
rosa_roxburghii	Rroxscaffold_2G00147930
rosa_rugosa	Rorug02G0038200 Rorug02G0038300 Rorug05G0081200 Rorug05G0081200
rosa_samantha	Rh2AG084700 Rh2BG085300 Rh2CG087600 Rh2DG083300 Rh5BG168400
rosa_wichuraiana	Rw2G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	353
AciI	CCGC	3 cut(s)	65, 257, 374
AclWI	GGATC	2 cut(s)	206, 305
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	327
AcvI	CACGTG	1 cut(s)	293
AfiI	CCNNNNNNNGG	4 cut(s)	89, 131, 320, 353
AgsI	TTSAA	1 cut(s)	170
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	3 cut(s)	200, 350, 445
AluI	AGCT	3 cut(s)	200, 350, 445
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	2 cut(s)	206, 305
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	5 cut(s)	44, 66, 133, 287, 302
ApeKI	GCWGC	2 cut(s)	220, 442
ApoI	RAATTY	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	2 cut(s)	19, 368
BanII	GRGCYC	1 cut(s)	202
BbrPI	CACGTG	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	2 cut(s)	232, 454
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	3 cut(s)	31, 106, 317
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	1 cut(s)	132
BciVI	GTATCC	1 cut(s)	6
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	306
BfuI	GTATCC	1 cut(s)	6
BisI	GCNGC	3 cut(s)	66, 221, 443
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	3 cut(s)	67, 222, 444
Bme1390I	CCNGG	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	287
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	2 cut(s)	23, 361
Bpu1102I	GCTNAGC	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 131, 320, 353
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	38
BseLI	CCNNNNNNNGG	4 cut(s)	89, 131, 320, 353
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	3 cut(s)	215, 222, 330
BseX3I	CGGCCG	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	232, 454
BsgI	GTGCAG	1 cut(s)	239
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	5 cut(s)	46, 68, 135, 289, 304
BsiEI	CGRYCG	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	4 cut(s)	89, 131, 320, 353
BsmAI	GTCTC	1 cut(s)	81
BsmBI	CGTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	288
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	5 cut(s)	46, 68, 135, 289, 304
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	4 cut(s)	77, 211, 310, 358
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	3 cut(s)	65, 257, 374
BspANI	GGCC	5 cut(s)	46, 68, 135, 289, 304
BspCNI	CTCAG	3 cut(s)	214, 221, 331
BspPI	GGATC	2 cut(s)	206, 305
BsrDI	GCAATG	1 cut(s)	276
BssMI	GATC	4 cut(s)	77, 211, 310, 358
Bst2UI	CCWGG	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	95, 348
BstDEI	CTNAG	3 cut(s)	201, 208, 339
BstF5I	GGATG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	4 cut(s)	80, 214, 313, 361
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	4 cut(s)	77, 211, 310, 358
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	439
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	232, 454
BstX2I	RGATCY	2 cut(s)	211, 310
BstXI	CCANNNNNNTGG	1 cut(s)	143
BstYI	RGATCY	2 cut(s)	211, 310
BstZI	CGGCCG	1 cut(s)	66
BsuI	GTATCC	1 cut(s)	6
BsuRI	GGCC	5 cut(s)	46, 68, 135, 289, 304
BtsCI	GGATG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	2 cut(s)	95, 348
CaiI	CAGNNNCTG	1 cut(s)	215
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	287
CviAII	CATG	1 cut(s)	61
DdeI	CTNAG	3 cut(s)	201, 208, 339
DpnI	GATC	4 cut(s)	79, 213, 312, 360
DpnII	GATC	4 cut(s)	77, 211, 310, 358
EaeI	YGGCCR	1 cut(s)	66
EagI	CGGCCG	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	200
EclXI	CGGCCG	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	202
Eco52I	CGGCCG	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	200
Eco72I	CACGTG	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	202
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	1 cut(s)	64
FaiI	YATR	2 cut(s)	62, 423
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	1 cut(s)	60
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	66, 221, 443
FokI	GGATG	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	3 cut(s)	66, 221, 443
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	3 cut(s)	66, 221, 443
HaeIII	GGCC	5 cut(s)	46, 68, 135, 289, 304
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HinfI	GANTC	1 cut(s)	334
HphI	GGTGA	2 cut(s)	19, 368
Hpy188I	TCNGA	5 cut(s)	32, 211, 236, 428, 464
Hpy188III	TCNNGA	1 cut(s)	338
HpyCH4IV	ACGT	2 cut(s)	277, 292
HpyCH4V	TGCA	4 cut(s)	36, 220, 406, 433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	439
HpyF3I	CTNAG	3 cut(s)	201, 208, 339
HpySE526I	ACGT	2 cut(s)	277, 292
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	4 cut(s)	77, 211, 310, 358
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	9 cut(s)	28, 117, 144, 225, 228, 318, 351, 360, 419
Lsp1109I	GCAGC	2 cut(s)	232, 454
LweI	GCATC	2 cut(s)	23, 361
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	2 cut(s)	277, 292
MaeIII	GTNAC	3 cut(s)	113, 246, 293
MalI	GATC	4 cut(s)	79, 213, 312, 360
MboI	GATC	4 cut(s)	77, 211, 310, 358
MboII	GAAGA	1 cut(s)	336
MflI	RGATCY	2 cut(s)	211, 310
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	2 cut(s)	327, 458
MlyI	GAGTC	1 cut(s)	343
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	4 cut(s)	3, 110, 217, 261
MspR9I	CCNGG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	439
NdeII	GATC	4 cut(s)	77, 211, 310, 358
NlaIII	CATG	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	293
PctI	GAATGC	1 cut(s)	225
PflMI	CCANNNNNTGG	1 cut(s)	353
PkrI	GCNGC	3 cut(s)	67, 222, 444
PleI	GAGTC	1 cut(s)	342
PmaCI	CACGTG	1 cut(s)	293
PmlI	CACGTG	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	342
Ppu21I	YACGTR	1 cut(s)	293
Psp124BI	GAGCTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	130
PspCI	CACGTG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	287
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	2 cut(s)	211, 310
SacI	GAGCTC	1 cut(s)	202
SatI	GCNGC	3 cut(s)	66, 221, 443
Sau3AI	GATC	4 cut(s)	77, 211, 310, 358
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	8 cut(s)	29, 102, 202, 253, 280, 295, 352, 447
SfaNI	GCATC	2 cut(s)	23, 361
SfcI	CTRYAG	1 cut(s)	306
Sse9I	AATT	2 cut(s)	327, 458
SsiI	CCGC	3 cut(s)	65, 257, 374
SspMI	CTAG	1 cut(s)	84
SstI	GAGCTC	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	130
TaiI	ACGT	2 cut(s)	280, 295
TaqI	TCGA	1 cut(s)	102
TaqII	GACCGA	1 cut(s)	443
TasI	AATT	2 cut(s)	327, 458
TauI	GCSGC	1 cut(s)	68
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	2 cut(s)	220, 442
Tsp45I	GTSAC	1 cut(s)	293
TspRI	CASTG	1 cut(s)	388
Van91I	CCANNNNNTGG	1 cut(s)	353
XapI	RAATTY	1 cut(s)	327
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.