Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009283

Physical Location & Seq

Genomic Coordinates Reverse (-)

2965112 .. 2965378

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0038200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAGATCTGCTTGGCATGGGGAGTTAAAACTGATATGCGAAAGCTTGAAGGCACCATGTCCACCATCAAAAGTGCACTCTATGATGCTGAAGAGAAGCAATGGAGTAACAAGAGGGCATAAAGTTGGCTGCAACAACTTAAAGATGTGTTCCGCAATGTTGAAGATGTGTTGGATGAGTTTGAGTGCGAAGCTTTGCGGAGCGAAGACACTGCGAGAAAGGTATGTCGATTCTTCTCGCGCTCTAGTCCAATTGCTTTTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S16

Protein Analysis

88

Amino Acids

9.85

Weight (kDa)

9.93

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56940
fragaria_vesca	FvH4_1g07750
malus_domestica	MD02G1081900.v1.1 MD15G1209200.v1.1
prunus_persica	Prupe.7G207200_v2.0.a1 Prupe.7G207200_v2.0.a1
pyrus_communis	pycom02g06470 pycom15g18550
rosa_chinensis	RchiOBHm_Chr2g0093641
rosa_laevigata	RLG00000016423
rosa_multiflora	Rmu_sc0002126.1_g000018
rosa_roxburghii	Rroxscaffold_2G00147930
rosa_rugosa	Rorug02G0038200 Rorug02G0038300 Rorug05G0081200 Rorug05G0081200
rosa_samantha	Rh2AG084700 Rh2BG085300 Rh2CG087600 Rh2DG083300 Rh5BG168400
rosa_wichuraiana	Rw2G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	52
AccII	CGCG	1 cut(s)	240
AciI	CCGC	2 cut(s)	153, 198
AcuI	CTGAAG	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	49, 163
AluBI	AGCT	2 cut(s)	45, 193
AluI	AGCT	2 cut(s)	45, 193
Alw21I	GWGCWC	1 cut(s)	78
Alw44I	GTGCAC	1 cut(s)	74
ApaLI	GTGCAC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	129
AspLEI	GCGC	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	1 cut(s)	73
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BfaI	CTAG	1 cut(s)	245
BglII	AGATCT	1 cut(s)	5
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	54
BmsI	GCATC	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	212
Bse3DI	GCAATG	2 cut(s)	106, 162
BseGI	GGATG	1 cut(s)	180
BseMI	GCAATG	2 cut(s)	106, 162
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	240
BshNI	GGYRCC	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	5
BspACI	CCGC	2 cut(s)	153, 198
BspFNI	CGCG	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	54
BspT107I	GGYRCC	1 cut(s)	52
BsrDI	GCAATG	2 cut(s)	106, 162
BssMI	GATC	1 cut(s)	5
Bst6I	CTCTTC	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	1 cut(s)	8
BstMBI	GATC	1 cut(s)	5
BstSLI	GKGCMC	1 cut(s)	78
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	116
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	209
CfoI	GCGC	1 cut(s)	242
CviAII	CATG	2 cut(s)	17, 57
CviJI	RGCY	3 cut(s)	45, 129, 193
CviKI_1	RGCY	3 cut(s)	45, 129, 193
DpnI	GATC	1 cut(s)	7
DpnII	GATC	1 cut(s)	5
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	110
FaeI	CATG	2 cut(s)	20, 60
FaiI	YATR	6 cut(s)	18, 37, 58, 83, 120, 225
FatI	CATG	2 cut(s)	16, 56
Fnu4HI	GCNGC	1 cut(s)	130
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	130
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	1 cut(s)	130
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	2 cut(s)	20, 60
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HindIII	AAGCTT	2 cut(s)	43, 191
HinfI	GANTC	1 cut(s)	230
Hpy166II	GTNNAC	2 cut(s)	62, 76
Hpy188I	TCNGA	1 cut(s)	266
Hpy8I	GTNNAC	2 cut(s)	62, 76
HpyAV	CCTTC	1 cut(s)	43
HpyCH4V	TGCA	2 cut(s)	76, 132
Hsp92II	CATG	2 cut(s)	20, 60
HspAI	GCGC	1 cut(s)	240
Kzo9I	GATC	1 cut(s)	5
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	1 cut(s)	116
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	1 cut(s)	7
MboI	GATC	1 cut(s)	5
MboII	GAAGA	4 cut(s)	103, 175, 217, 225
MfeI	CAATTG	1 cut(s)	251
MflI	RGATCY	1 cut(s)	5
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	1 cut(s)	107
MseI	TTAA	2 cut(s)	26, 140
MunI	CAATTG	1 cut(s)	251
MvnI	CGCG	1 cut(s)	240
NdeII	GATC	1 cut(s)	5
NlaIII	CATG	2 cut(s)	20, 60
NlaIV	GGNNCC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	5
SaqAI	TTAA	2 cut(s)	26, 140
SatI	GCNGC	1 cut(s)	130
Sau3AI	GATC	1 cut(s)	5
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	3 cut(s)	47, 195, 224
SfaNI	GCATC	1 cut(s)	75
SgeI	CNNG	9 cut(s)	24, 29, 58, 69, 123, 227, 249, 251, 257
Sse9I	AATT	1 cut(s)	251
SsiI	CCGC	2 cut(s)	153, 198
SspMI	CTAG	1 cut(s)	245
TaqI	TCGA	1 cut(s)	228
TasI	AATT	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	2 cut(s)	26, 140
Tru9I	TTAA	2 cut(s)	26, 140
TscAI	CASTG	1 cut(s)	216
TseI	GCWGC	1 cut(s)	129
TspRI	CASTG	1 cut(s)	216
VneI	GTGCAC	1 cut(s)	74
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.