Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009283

Physical Location & Seq

Genomic Coordinates Forward (+)

85624347 .. 85626200

Gene Structure 1854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTGGTGAGGCTCCGATTAGCGAGGTTCGGATGCAAGAACCGGCCGTTCTATCGGGTCATGGCGGCCGATAGTCGATCTCCCAGAGACGGCAAGCACCTTGAAGTTTTGGGCTATTACAATCCCTTGCCAGGCCAAGATGGGGGTAAACGAATGGGTCTGAACTTTGATAGAGTGAAGTATTGGCTATCTGTTGGAGCTCAGCCTTCAGATCCTGTGCAGCGCCTTCTTTTCAGGGCAGGATTATTACCTCCAACACCGATGATGGCAATGGCACGTAAGGGTGGGCCACGTGACACACGGCCTGTAGATCCTATGAGTGGGCGGATCCTGACTCCTGAGAGGCCAGCCAGTGCTTATGAAGCCAAAGAAAACGCTGAAGAAAAAGAAGCTGAAAGTGCTGAAGTTAATGATGGGAGGTTGCAAGAAACGATCTTCCATATCGGCTTGCAGGACAAGCAGCATGGTATTGGTCAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S16

Protein Analysis

160

Amino Acids

17.92

Weight (kDa)

9.66

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S16	PF00886	9 - 70	6.8e-28	Ribosomal protein S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56940
fragaria_vesca	FvH4_1g07750
malus_domestica	MD02G1081900.v1.1 MD15G1209200.v1.1
prunus_persica	Prupe.7G207200_v2.0.a1 Prupe.7G207200_v2.0.a1
pyrus_communis	pycom02g06470 pycom15g18550
rosa_chinensis	RchiOBHm_Chr2g0093641
rosa_laevigata	RLG00000016423
rosa_multiflora	Rmu_sc0002126.1_g000018
rosa_roxburghii	Rroxscaffold_2G00147930
rosa_rugosa	Rorug02G0038200 Rorug02G0038300 Rorug05G0081200 Rorug05G0081200
rosa_samantha	Rh2AG084700 Rh2BG085300 Rh2CG087600 Rh2DG083300 Rh5BG168400
rosa_wichuraiana	Rw2G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	65, 325
AclWI	GGATC	4 cut(s)	206, 305, 322, 335
AcoI	YGGCCR	2 cut(s)	44, 66
AcuI	CTGAAG	3 cut(s)	192, 399, 423
AcvI	CACGTG	1 cut(s)	293
AfiI	CCNNNNNNNGG	4 cut(s)	89, 131, 142, 320
AgsI	TTSAA	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	2 cut(s)	200, 392
AluI	AGCT	2 cut(s)	200, 392
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	4 cut(s)	206, 305, 322, 335
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	6 cut(s)	44, 66, 133, 287, 302, 344
ApeKI	GCWGC	2 cut(s)	220, 460
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	19
BamHI	GGATCC	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	202
BbrPI	CACGTG	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	2 cut(s)	232, 472
BccI	CCATC	3 cut(s)	134, 259, 407
BceAI	ACGGC	3 cut(s)	31, 106, 317
BciT130I	CCWGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	226
BisI	GCNGC	3 cut(s)	66, 221, 461
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	3 cut(s)	67, 222, 462
Bme1390I	CCNGG	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	2 cut(s)	14, 329
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	23
Bpu1102I	GCTNAGC	1 cut(s)	201
BsaAI	YACGTR	2 cut(s)	278, 293
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 131, 142, 320
Bse118I	RCCGGY	1 cut(s)	42
Bse1I	ACTGG	1 cut(s)	351
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	38
BseLI	CCNNNNNNNGG	4 cut(s)	89, 131, 142, 320
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	215, 330
BseNI	ACTGG	1 cut(s)	351
BseX3I	CGGCCG	2 cut(s)	44, 66
BseXI	GCAGC	2 cut(s)	232, 472
BsgI	GTGCAG	1 cut(s)	239
Bsh1285I	CGRYCG	2 cut(s)	47, 69
BshFI	GGCC	6 cut(s)	46, 68, 135, 289, 304, 346
BsiEI	CGRYCG	2 cut(s)	47, 69
BsiHKAI	GWGCWC	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	43
BslI	CCNNNNNNNGG	4 cut(s)	89, 131, 142, 320
BsmAI	GTCTC	1 cut(s)	81
BsmBI	CGTCTC	1 cut(s)	81
BsnI	GGCC	6 cut(s)	46, 68, 135, 289, 304, 346
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	5 cut(s)	77, 211, 310, 327, 432
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	2 cut(s)	65, 325
BspANI	GGCC	6 cut(s)	46, 68, 135, 289, 304, 346
BspCNI	CTCAG	2 cut(s)	214, 331
BspLI	GGNNCC	2 cut(s)	14, 329
BspPI	GGATC	4 cut(s)	206, 305, 322, 335
BsrDI	GCAATG	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	351
BssAI	RCCGGY	1 cut(s)	42
BssMI	GATC	5 cut(s)	77, 211, 310, 327, 432
Bst2UI	CCWGG	1 cut(s)	132
BstBAI	YACGTR	2 cut(s)	278, 293
BstC8I	GCNNGC	3 cut(s)	95, 348, 449
BstDEI	CTNAG	2 cut(s)	201, 339
BstF5I	GGATG	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	5 cut(s)	80, 214, 313, 330, 435
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	5 cut(s)	77, 211, 310, 327, 432
BstMCI	CGRYCG	2 cut(s)	47, 69
BstMWI	GCNNNNNNNGC	3 cut(s)	362, 398, 457
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	232, 472
BstX2I	RGATCY	3 cut(s)	211, 310, 327
BstYI	RGATCY	3 cut(s)	211, 310, 327
BstZI	CGGCCG	2 cut(s)	44, 66
BsuRI	GGCC	6 cut(s)	46, 68, 135, 289, 304, 346
BtsCI	GGATG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	3 cut(s)	95, 348, 449
CaiI	CAGNNNCTG	1 cut(s)	215
CfoI	GCGC	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	287
CviAII	CATG	2 cut(s)	61, 464
DdeI	CTNAG	2 cut(s)	201, 339
DpnI	GATC	5 cut(s)	79, 213, 312, 329, 434
DpnII	GATC	5 cut(s)	77, 211, 310, 327, 432
EaeI	YGGCCR	2 cut(s)	44, 66
EagI	CGGCCG	2 cut(s)	44, 66
EciI	GGCGGA	1 cut(s)	340
Ecl136II	GAGCTC	1 cut(s)	200
EclXI	CGGCCG	2 cut(s)	44, 66
Eco24I	GRGCYC	1 cut(s)	202
Eco52I	CGGCCG	2 cut(s)	44, 66
Eco53kI	GAGCTC	1 cut(s)	200
Eco57I	CTGAAG	3 cut(s)	192, 399, 423
Eco72I	CACGTG	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	202
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	2 cut(s)	64, 467
FaiI	YATR	6 cut(s)	62, 317, 360, 441, 465, 481
FatI	CATG	2 cut(s)	60, 463
Fnu4HI	GCNGC	3 cut(s)	66, 221, 461
FokI	GGATG	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	3 cut(s)	66, 221, 461
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	3 cut(s)	66, 221, 461
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	6 cut(s)	46, 68, 135, 289, 304, 346
HapII	CCGG	1 cut(s)	43
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	64, 467
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HinfI	GANTC	1 cut(s)	334
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	4 cut(s)	17, 32, 162, 211
Hpy188III	TCNNGA	2 cut(s)	331, 338
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	2 cut(s)	216, 236
HpyCH4IV	ACGT	2 cut(s)	277, 292
HpyCH4V	TGCA	4 cut(s)	36, 220, 424, 451
HpyF10VI	GCNNNNNNNGC	3 cut(s)	362, 398, 457
HpyF3I	CTNAG	2 cut(s)	201, 339
HpySE526I	ACGT	2 cut(s)	277, 292
Hsp92II	CATG	2 cut(s)	64, 467
HspAI	GCGC	1 cut(s)	223
Kzo9I	GATC	5 cut(s)	77, 211, 310, 327, 432
LmnI	GCTCC	2 cut(s)	18, 197
Lsp1109I	GCAGC	2 cut(s)	232, 472
LweI	GCATC	1 cut(s)	23
MaeII	ACGT	2 cut(s)	277, 292
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	5 cut(s)	79, 213, 312, 329, 434
MboI	GATC	5 cut(s)	77, 211, 310, 327, 432
MboII	GAAGA	2 cut(s)	392, 427
MflI	RGATCY	3 cut(s)	211, 310, 327
MhlI	GDGCHC	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	328
MmeI	TCCRAC	2 cut(s)	175, 278
MnlI	CCTC	5 cut(s)	3, 18, 261, 336, 411
MseI	TTAA	1 cut(s)	408
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	362, 398, 457
NdeII	GATC	5 cut(s)	77, 211, 310, 327, 432
NlaIII	CATG	2 cut(s)	64, 467
NlaIV	GGNNCC	2 cut(s)	14, 329
NmuCI	GTSAC	1 cut(s)	293
PkrI	GCNGC	3 cut(s)	67, 222, 462
PleI	GAGTC	1 cut(s)	328
PmaCI	CACGTG	1 cut(s)	293
PmlI	CACGTG	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	328
Ppu21I	YACGTR	2 cut(s)	278, 293
Psp124BI	GAGCTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	130
PspCI	CACGTG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	14, 329
PspPI	GGNCC	1 cut(s)	287
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	3 cut(s)	211, 310, 327
SacI	GAGCTC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	3 cut(s)	66, 221, 461
Sau3AI	GATC	5 cut(s)	77, 211, 310, 327, 432
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	8 cut(s)	29, 102, 202, 253, 280, 295, 394, 422
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	1 cut(s)	306
SsiI	CCGC	2 cut(s)	65, 325
SstI	GAGCTC	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	130
TaiI	ACGT	2 cut(s)	280, 295
TaqI	TCGA	1 cut(s)	76
TauI	GCSGC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	2 cut(s)	220, 460
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	375
TspRI	CASTG	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.