Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009283

Physical Location & Seq

Genomic Coordinates Forward (+)

6841430 .. 6843340

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G007090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGTGGTGAGGCTCCGATTAGCGAGGTTCGGATGCAAGAACCGGCCGTTCTATCGGGTCATGGCGGCCGATAGCCGATCTCCCAGAGACGGCAAGCACCTTGAAGTTTTGGGCTATTACAATCCCTTGCCAGGCCAAGATGGGGGTAAACGAATGGGTCTGAACTTTGATAGAGTGAAGTATTGGCTATCTGTTGGAGCTCAGCCTTCAGATCCTGTGCAGCGCCTTCTATTCAGGGCAGGATTATTACCTCCAACACCAATGATGGCAATGGCACGTAAGGGTGGGCCACGTGACACACGGCCTGTAGATCCTATGACTGGGCGGATCCTGACTCCTGAGAAGCCAGCCAGTGCTGATGAAGCCAAAGATGCTGAAAACGCTGAAGAAAAAGAAGCTGAAAGTGCTGAAGTTAATGATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S16

Protein Analysis

141

Amino Acids

15.63

Weight (kDa)

9.37

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S16	PF00886	9 - 70	5.1e-28	Ribosomal protein S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56940
fragaria_vesca	FvH4_1g07750
malus_domestica	MD02G1081900.v1.1 MD15G1209200.v1.1
prunus_persica	Prupe.7G207200_v2.0.a1 Prupe.7G207200_v2.0.a1
pyrus_communis	pycom02g06470 pycom15g18550
rosa_chinensis	RchiOBHm_Chr2g0093641
rosa_laevigata	RLG00000016423
rosa_multiflora	Rmu_sc0002126.1_g000018
rosa_roxburghii	Rroxscaffold_2G00147930
rosa_rugosa	Rorug02G0038200 Rorug02G0038300 Rorug05G0081200 Rorug05G0081200
rosa_samantha	Rh2AG084700 Rh2BG085300 Rh2CG087600 Rh2DG083300 Rh5BG168400
rosa_wichuraiana	Rw2G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	65, 325
AclWI	GGATC	4 cut(s)	206, 305, 322, 335
AcoI	YGGCCR	2 cut(s)	44, 66
AcuI	CTGAAG	2 cut(s)	192, 405
AcvI	CACGTG	1 cut(s)	293
AfiI	CCNNNNNNNGG	4 cut(s)	89, 131, 142, 320
AgsI	TTSAA	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	2 cut(s)	200, 398
AluI	AGCT	2 cut(s)	200, 398
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	4 cut(s)	206, 305, 322, 335
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	5 cut(s)	44, 66, 133, 287, 302
ApeKI	GCWGC	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	19
BamHI	GGATCC	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	202
BbrPI	CACGTG	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	3 cut(s)	134, 259, 413
BceAI	ACGGC	3 cut(s)	31, 106, 317
BciT130I	CCWGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	226
BisI	GCNGC	2 cut(s)	66, 221
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	2 cut(s)	67, 222
Bme1390I	CCNGG	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	2 cut(s)	14, 329
BmrFI	CCNGG	1 cut(s)	132
BmrI	ACTGGG	1 cut(s)	330
BmsI	GCATC	2 cut(s)	23, 361
BmuI	ACTGGG	1 cut(s)	330
Bpu1102I	GCTNAGC	1 cut(s)	201
BsaAI	YACGTR	2 cut(s)	278, 293
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 131, 142, 320
Bse118I	RCCGGY	1 cut(s)	42
Bse1I	ACTGG	2 cut(s)	325, 351
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	38
BseLI	CCNNNNNNNGG	4 cut(s)	89, 131, 142, 320
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	215, 330
BseNI	ACTGG	2 cut(s)	325, 351
BseX3I	CGGCCG	2 cut(s)	44, 66
BseXI	GCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	239
Bsh1285I	CGRYCG	2 cut(s)	47, 69
BshFI	GGCC	5 cut(s)	46, 68, 135, 289, 304
BsiEI	CGRYCG	2 cut(s)	47, 69
BsiHKAI	GWGCWC	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	43
BslI	CCNNNNNNNGG	4 cut(s)	89, 131, 142, 320
BsmAI	GTCTC	1 cut(s)	81
BsmBI	CGTCTC	1 cut(s)	81
BsnI	GGCC	5 cut(s)	46, 68, 135, 289, 304
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	4 cut(s)	77, 211, 310, 327
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	2 cut(s)	65, 325
BspANI	GGCC	5 cut(s)	46, 68, 135, 289, 304
BspCNI	CTCAG	2 cut(s)	214, 331
BspLI	GGNNCC	2 cut(s)	14, 329
BspPI	GGATC	4 cut(s)	206, 305, 322, 335
BsrDI	GCAATG	1 cut(s)	276
BsrFI	RCCGGY	1 cut(s)	42
BsrI	ACTGG	2 cut(s)	325, 351
BssAI	RCCGGY	1 cut(s)	42
BssMI	GATC	4 cut(s)	77, 211, 310, 327
Bst2UI	CCWGG	1 cut(s)	132
BstBAI	YACGTR	2 cut(s)	278, 293
BstC8I	GCNNGC	2 cut(s)	95, 348
BstDEI	CTNAG	2 cut(s)	201, 339
BstF5I	GGATG	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	4 cut(s)	80, 214, 313, 330
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	4 cut(s)	77, 211, 310, 327
BstMCI	CGRYCG	2 cut(s)	47, 69
BstMWI	GCNNNNNNNGC	4 cut(s)	362, 371, 380, 404
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	232
BstX2I	RGATCY	3 cut(s)	211, 310, 327
BstYI	RGATCY	3 cut(s)	211, 310, 327
BstZI	CGGCCG	2 cut(s)	44, 66
BsuRI	GGCC	5 cut(s)	46, 68, 135, 289, 304
BtsCI	GGATG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	95, 348
CaiI	CAGNNNCTG	1 cut(s)	215
CfoI	GCGC	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	287
CviAII	CATG	1 cut(s)	61
DdeI	CTNAG	2 cut(s)	201, 339
DpnI	GATC	4 cut(s)	79, 213, 312, 329
DpnII	GATC	4 cut(s)	77, 211, 310, 327
EaeI	YGGCCR	2 cut(s)	44, 66
EagI	CGGCCG	2 cut(s)	44, 66
EciI	GGCGGA	1 cut(s)	340
Ecl136II	GAGCTC	1 cut(s)	200
EclXI	CGGCCG	2 cut(s)	44, 66
Eco24I	GRGCYC	1 cut(s)	202
Eco52I	CGGCCG	2 cut(s)	44, 66
Eco53kI	GAGCTC	1 cut(s)	200
Eco57I	CTGAAG	2 cut(s)	192, 405
Eco72I	CACGTG	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	202
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	1 cut(s)	64
FaiI	YATR	2 cut(s)	62, 317
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	66, 221
FokI	GGATG	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	2 cut(s)	66, 221
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	2 cut(s)	66, 221
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	5 cut(s)	46, 68, 135, 289, 304
HapII	CCGG	1 cut(s)	43
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HinfI	GANTC	1 cut(s)	334
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	4 cut(s)	17, 32, 162, 211
Hpy188III	TCNNGA	2 cut(s)	331, 338
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	2 cut(s)	216, 236
HpyCH4IV	ACGT	2 cut(s)	277, 292
HpyCH4V	TGCA	2 cut(s)	36, 220
HpyF10VI	GCNNNNNNNGC	4 cut(s)	362, 371, 380, 404
HpyF3I	CTNAG	2 cut(s)	201, 339
HpySE526I	ACGT	2 cut(s)	277, 292
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	223
Kzo9I	GATC	4 cut(s)	77, 211, 310, 327
LmnI	GCTCC	2 cut(s)	18, 197
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	2 cut(s)	23, 361
MaeII	ACGT	2 cut(s)	277, 292
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	4 cut(s)	79, 213, 312, 329
MboI	GATC	4 cut(s)	77, 211, 310, 327
MboII	GAAGA	1 cut(s)	398
MflI	RGATCY	3 cut(s)	211, 310, 327
MhlI	GDGCHC	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	328
MmeI	TCCRAC	2 cut(s)	175, 278
MnlI	CCTC	3 cut(s)	3, 18, 261
MseI	TTAA	2 cut(s)	414, 424
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	4 cut(s)	362, 371, 380, 404
NdeII	GATC	4 cut(s)	77, 211, 310, 327
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	2 cut(s)	14, 329
NmuCI	GTSAC	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	67, 222
PleI	GAGTC	1 cut(s)	328
PmaCI	CACGTG	1 cut(s)	293
PmlI	CACGTG	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	328
Ppu21I	YACGTR	2 cut(s)	278, 293
Psp124BI	GAGCTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	130
PspCI	CACGTG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	14, 329
PspPI	GGNCC	1 cut(s)	287
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	3 cut(s)	211, 310, 327
SacI	GAGCTC	1 cut(s)	202
SaqAI	TTAA	2 cut(s)	414, 424
SatI	GCNGC	2 cut(s)	66, 221
Sau3AI	GATC	4 cut(s)	77, 211, 310, 327
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	7 cut(s)	29, 102, 202, 253, 280, 295, 400
SfaNI	GCATC	2 cut(s)	23, 361
SfcI	CTRYAG	1 cut(s)	306
SsiI	CCGC	2 cut(s)	65, 325
SstI	GAGCTC	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	130
TaiI	ACGT	2 cut(s)	280, 295
TauI	GCSGC	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	414, 424
Tru9I	TTAA	2 cut(s)	414, 424
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	375
TspRI	CASTG	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.