Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009283

Physical Location & Seq

Genomic Coordinates Reverse (-)

6416429 .. 6418901

Gene Structure 2473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1081900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTGGTGAGGATCCGATTGGCGAGGTTCGGATGCAAAAATAGGCCGTTTTATCGGGTCATGGCGGCCGATAGCCGATCTCCGAGAGACGGCAAGCACCTCGAAGTCTTGGGCTACTACAATCCCTTGCCAGGCCAAGATGGTGGAAAACGAATGGGTCTGAACTTTGAAAGAGTGAAGTATTGGCTATCCGTTGGAGCTCAGCCTTCGGATCCAGTGCAGCGTATTCTTTTCAGAGCTGGGCTGTTGCCTCCACCACCAATGGTGGCAATGGGACGTAAGGGAGGGCCACGTGACACGCGACCTGTTGATCCTATGAGTGGACGGTTTGTGACTCCTGAGAAGCCAGCAGCTAGTGGTGATCGAGGGAAAGATGCGGAAAGCACTGAAAACGATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0032543 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:0140053 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S16

Protein Analysis

134

Amino Acids

14.7

Weight (kDa)

10.21

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S16	PF00886	9 - 70	3.3e-28	Ribosomal protein S16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56940
fragaria_vesca	FvH4_1g07750
malus_domestica	MD02G1081900.v1.1 MD15G1209200.v1.1
prunus_persica	Prupe.7G207200_v2.0.a1 Prupe.7G207200_v2.0.a1
pyrus_communis	pycom02g06470 pycom15g18550
rosa_chinensis	RchiOBHm_Chr2g0093641
rosa_laevigata	RLG00000016423
rosa_multiflora	Rmu_sc0002126.1_g000018
rosa_roxburghii	Rroxscaffold_2G00147930
rosa_rugosa	Rorug02G0038200 Rorug02G0038300 Rorug05G0081200 Rorug05G0081200
rosa_samantha	Rh2AG084700 Rh2BG085300 Rh2CG087600 Rh2DG083300 Rh5BG168400
rosa_wichuraiana	Rw2G007090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	301
AciI	CCGC	2 cut(s)	65, 377
AclWI	GGATC	5 cut(s)	7, 20, 206, 219, 305
AcoI	YGGCCR	1 cut(s)	66
AcvI	CACGTG	1 cut(s)	293
AfiI	CCNNNNNNNGG	3 cut(s)	89, 131, 320
AgsI	TTSAA	1 cut(s)	170
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	3 cut(s)	200, 239, 353
AluI	AGCT	3 cut(s)	200, 239, 353
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	5 cut(s)	7, 20, 206, 219, 305
AoxI	GGCC	4 cut(s)	44, 66, 133, 287
ApeKI	GCWGC	2 cut(s)	220, 350
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	2 cut(s)	19, 371
BamHI	GGATCC	2 cut(s)	12, 211
BanII	GRGCYC	1 cut(s)	202
BbrPI	CACGTG	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	2 cut(s)	232, 362
BccI	CCATC	2 cut(s)	134, 389
BceAI	ACGGC	2 cut(s)	31, 106
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	354
BisI	GCNGC	3 cut(s)	66, 221, 351
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	3 cut(s)	67, 222, 352
Bme1390I	CCNGG	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	2 cut(s)	14, 213
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	2 cut(s)	23, 364
Bpu1102I	GCTNAGC	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 131, 320
Bse1I	ACTGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	38
BseLI	CCNNNNNNNGG	3 cut(s)	89, 131, 320
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	215, 330
BseNI	ACTGG	1 cut(s)	215
BseX3I	CGGCCG	1 cut(s)	66
BseXI	GCAGC	2 cut(s)	232, 362
BseYI	CCCAGC	1 cut(s)	239
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	301
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	4 cut(s)	46, 68, 135, 289
BsiEI	CGRYCG	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	3 cut(s)	89, 131, 320
BsmAI	GTCTC	1 cut(s)	81
BsmBI	CGTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	4 cut(s)	46, 68, 135, 289
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	5 cut(s)	12, 77, 211, 310, 361
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	2 cut(s)	65, 377
BspANI	GGCC	4 cut(s)	46, 68, 135, 289
BspCNI	CTCAG	2 cut(s)	214, 331
BspFNI	CGCG	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	14, 213
BspPI	GGATC	5 cut(s)	7, 20, 206, 219, 305
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	215
BssMI	GATC	5 cut(s)	12, 77, 211, 310, 361
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	95, 348
BstDEI	CTNAG	2 cut(s)	201, 339
BstF5I	GGATG	1 cut(s)	38
BstFNI	CGCG	1 cut(s)	301
BstKTI	GATC	5 cut(s)	15, 80, 214, 313, 364
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	5 cut(s)	12, 77, 211, 310, 361
BstMCI	CGRYCG	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	1 cut(s)	130
BstUI	CGCG	1 cut(s)	301
BstV1I	GCAGC	2 cut(s)	232, 362
BstX2I	RGATCY	2 cut(s)	12, 211
BstXI	CCANNNNNNTGG	1 cut(s)	143
BstYI	RGATCY	2 cut(s)	12, 211
BstZI	CGGCCG	1 cut(s)	66
BsuRI	GGCC	4 cut(s)	46, 68, 135, 289
BtsCI	GGATG	1 cut(s)	38
BtsIMutI	CAGTG	2 cut(s)	222, 384
Cac8I	GCNNGC	2 cut(s)	95, 348
Cfr13I	GGNCC	1 cut(s)	287
CviAII	CATG	1 cut(s)	61
DdeI	CTNAG	2 cut(s)	201, 339
DpnI	GATC	5 cut(s)	14, 79, 213, 312, 363
DpnII	GATC	5 cut(s)	12, 77, 211, 310, 361
EaeI	YGGCCR	1 cut(s)	66
EagI	CGGCCG	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	200
EclXI	CGGCCG	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	202
Eco52I	CGGCCG	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	200
Eco72I	CACGTG	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	202
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	1 cut(s)	64
FaiI	YATR	2 cut(s)	62, 317
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	3 cut(s)	66, 221, 351
FokI	GGATG	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	3 cut(s)	66, 221, 351
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	3 cut(s)	66, 221, 351
GsaI	CCCAGC	1 cut(s)	243
HaeIII	GGCC	4 cut(s)	46, 68, 135, 289
Hin1II	CATG	1 cut(s)	64
HinfI	GANTC	1 cut(s)	334
HphI	GGTGA	2 cut(s)	19, 371
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	6 cut(s)	17, 32, 84, 162, 211, 236
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	1 cut(s)	323
HpyAV	CCTTC	1 cut(s)	216
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	2 cut(s)	277, 292
HpyCH4V	TGCA	2 cut(s)	36, 220
HpyF3I	CTNAG	2 cut(s)	201, 339
HpySE526I	ACGT	2 cut(s)	277, 292
Hsp92II	CATG	1 cut(s)	64
Kzo9I	GATC	5 cut(s)	12, 77, 211, 310, 361
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	7 cut(s)	117, 144, 225, 228, 318, 351, 360
Lsp1109I	GCAGC	2 cut(s)	232, 362
LweI	GCATC	2 cut(s)	23, 364
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	2 cut(s)	277, 292
MaeIII	GTNAC	2 cut(s)	293, 331
MalI	GATC	5 cut(s)	14, 79, 213, 312, 363
MboI	GATC	5 cut(s)	12, 77, 211, 310, 361
MflI	RGATCY	2 cut(s)	12, 211
MhlI	GDGCHC	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	328
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	6 cut(s)	3, 18, 110, 261, 278, 359
MseI	TTAA	1 cut(s)	400
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	301
NdeII	GATC	5 cut(s)	12, 77, 211, 310, 361
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	2 cut(s)	14, 213
NmuCI	GTSAC	2 cut(s)	293, 331
PcsI	WCGNNNNNNNCGW	1 cut(s)	298
PkrI	GCNGC	3 cut(s)	67, 222, 352
PleI	GAGTC	1 cut(s)	328
PmaCI	CACGTG	1 cut(s)	293
PmlI	CACGTG	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	328
Ppu21I	YACGTR	1 cut(s)	293
Psp124BI	GAGCTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	130
PspCI	CACGTG	1 cut(s)	293
PspFI	CCCAGC	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	14, 213
PspPI	GGNCC	1 cut(s)	287
PsuI	RGATCY	2 cut(s)	12, 211
SacI	GAGCTC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	400
SatI	GCNGC	3 cut(s)	66, 221, 351
Sau3AI	GATC	5 cut(s)	12, 77, 211, 310, 361
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	8 cut(s)	29, 102, 202, 241, 280, 295, 307, 355
SfaNI	GCATC	2 cut(s)	23, 364
SsiI	CCGC	2 cut(s)	65, 377
SspMI	CTAG	1 cut(s)	354
SstI	GAGCTC	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	2 cut(s)	280, 295
TaqI	TCGA	2 cut(s)	102, 364
TauI	GCSGC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	400
Tru9I	TTAA	1 cut(s)	400
TscAI	CASTG	2 cut(s)	222, 391
TseFI	GTSAC	2 cut(s)	293, 331
TseI	GCWGC	2 cut(s)	220, 350
Tsp45I	GTSAC	2 cut(s)	293, 331
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	2 cut(s)	222, 391
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.