AT5G57150

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008454
Physical Location & Seq
Forward (+)
23152174 .. 23155066
2893 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G57150.5

Sequence Viewer

Length: 744 bp
ATGGAGGATATCGTCGACCAAGAATTAAGCAATTACTGGGAACCTAGCTCCTTCCTCCAAAACGAAGACTTCGAATACGACAGCTGGCCTTTGGAAGAAGCCATTTCTGGGTCGTATGATTCGAGTTCGCCGGATGGAGCTGCTTCGTCGCCGGCTTCTAAGAATATTGTGTCGGAGAGAAACAGAAGACAGAAACTTAACCAGAGACTCTTCGCTCTTCGATCAGTTGTTCCCAATATCACTAAGATGGATAAAGCCTCAATAATCAAAGATGCTATTAGTTACATAGAAGGATTACAATATGAAGAAAAGAAGCTCGAAGCTGAGATCAGAGAACTTGAATCTACACCAAAGAGTAGCCTTAGTTTCAGCAAAGATTTTGATCGTGATTTACTTGTTCCTGTCACATCCAAGAAGATGAAGCAGCTTGATTCTGGTTCTTCCACTTCTCTCATCGAAGTTCTCGAATTGAAGGTAACATTCATGGGAGAGAGGACAATGGTGGTGAGTGTAACATGTAATAAGAGGACAGATACAATGGTGAAACTGTGTGAAGTCTTTGAGTCATTGAATCTCAAAATCCTCACTTCCAATCTCACCTCTTTCTCTGGCATGATCTTCCACACTGTCTTTATTGAGGCGGATGAAGAAGAACAAGAGGTGTTGCGGTTAAAAATAGAAACAGGAATAGGAGCTTATAATGAAACTCAAAGCCCTACTTTGAGCATCGACTCTCTTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

247

Amino Acids

27.93

Weight (kDa)

4.62

Isoelectric Point (pI)

59.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 56 - 100 4.7e-12 Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant PF22754 156 - 213 2.5e-18 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 699
AccI GTMKAC 1 cut(s) 15
AciI CCGC 2 cut(s) 641, 667
AfiI CCNNNNNNNGG 1 cut(s) 108
AflIII ACRYGT 1 cut(s) 515
AgsI TTSAA 3 cut(s) 341, 472, 571
AluBI AGCT 7 cut(s) 48, 84, 140, 316, 323, 427, 695
AluI AGCT 7 cut(s) 48, 84, 140, 316, 323, 427, 695
Alw26I GTCTC 1 cut(s) 199
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 2 cut(s) 140, 424
AsuHPI GGTGA 3 cut(s) 517, 553, 589
AsuII TTCGAA 1 cut(s) 72
BaeI ACNNNNGTAYC 2 cut(s) 525, 558
BbsI GAAGAC 2 cut(s) 72, 193
BbvI GCAGC 2 cut(s) 127, 436
BccI CCATC 2 cut(s) 128, 241
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 1 cut(s) 45
BisI GCNGC 2 cut(s) 141, 425
BlsI GCNGC 2 cut(s) 142, 426
BmiI GGNNCC 1 cut(s) 42
BmrI ACTGGG 1 cut(s) 46
BmsI GCATC 2 cut(s) 262, 735
BmuI ACTGGG 1 cut(s) 46
BpiI GAAGAC 2 cut(s) 72, 193
Bpu14I TTCGAA 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 381
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse118I RCCGGY 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 41
Bse8I GATNNNNATC 1 cut(s) 381
BseGI GGATG 3 cut(s) 139, 407, 649
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 127, 436
BshFI GGCC 1 cut(s) 88
BsiSI CCGG 2 cut(s) 131, 152
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 199
BsnI GGCC 1 cut(s) 88
Bsp119I TTCGAA 1 cut(s) 72
Bsp143I GATC 4 cut(s) 221, 327, 382, 615
BspACI CCGC 2 cut(s) 641, 667
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 42
BspQI GCTCTTC 1 cut(s) 222
BspT104I TTCGAA 1 cut(s) 72
BsrFI RCCGGY 1 cut(s) 151
BsrI ACTGG 1 cut(s) 41
BssAI RCCGGY 1 cut(s) 151
BssMI GATC 4 cut(s) 221, 327, 382, 615
Bst4CI ACNGT 2 cut(s) 549, 628
Bst6I CTCTTC 2 cut(s) 215, 222
BstBI TTCGAA 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 86, 153
BstDEI CTNAG 4 cut(s) 159, 243, 324, 362
BstF5I GGATG 3 cut(s) 139, 407, 649
BstKTI GATC 4 cut(s) 224, 330, 385, 618
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 4 cut(s) 221, 327, 382, 615
BstNSI RCATGY 1 cut(s) 519
BstV1I GCAGC 2 cut(s) 127, 436
BstV2I GAAGAC 2 cut(s) 72, 193
BsuRI GGCC 1 cut(s) 88
BtsCI GGATG 3 cut(s) 139, 407, 649
BtsIMutI CAGTG 1 cut(s) 624
Cac8I GCNNGC 2 cut(s) 86, 153
Cfr10I RCCGGY 1 cut(s) 151
CviAII CATG 3 cut(s) 484, 516, 613
DdeI CTNAG 4 cut(s) 159, 243, 324, 362
DpnI GATC 4 cut(s) 223, 329, 384, 617
DpnII GATC 4 cut(s) 221, 327, 382, 615
Eam1104I CTCTTC 2 cut(s) 215, 222
EarI CTCTTC 2 cut(s) 215, 222
EciI GGCGGA 1 cut(s) 656
Eco32I GATATC 1 cut(s) 10
EcoRV GATATC 1 cut(s) 10
FaeI CATG 3 cut(s) 487, 519, 616
FaiI YATR 7 cut(s) 117, 287, 303, 485, 517, 614, 699
FalI AAGNNNNNCTT 2 cut(s) 703, 735
FatI CATG 3 cut(s) 483, 515, 612
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 141, 425
FokI GGATG 3 cut(s) 146, 394, 656
Fsp4HI GCNGC 2 cut(s) 141, 425
FspBI CTAG 1 cut(s) 45
GluI GCNGC 2 cut(s) 141, 425
HaeIII GGCC 1 cut(s) 88
HapII CCGG 2 cut(s) 131, 152
Hin1II CATG 3 cut(s) 487, 519, 616
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 7 cut(s) 119, 207, 341, 431, 563, 571, 731
HpaII CCGG 2 cut(s) 131, 152
HphI GGTGA 3 cut(s) 517, 553, 589
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 175, 332
Hpy188III TCNNGA 2 cut(s) 386, 464
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 2 cut(s) 17, 151
HpyAV CCTTC 3 cut(s) 61, 284, 466
HpyCH4III ACNGT 2 cut(s) 549, 628
HpyF3I CTNAG 4 cut(s) 159, 243, 324, 362
Hsp92II CATG 3 cut(s) 487, 519, 616
KroI GCCGGC 1 cut(s) 151
KroNI GCCGGC 1 cut(s) 153
Kzo9I GATC 4 cut(s) 221, 327, 382, 615
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 3 cut(s) 53, 137, 692
Lsp1109I GCAGC 2 cut(s) 127, 436
LweI GCATC 2 cut(s) 262, 735
MaeI CTAG 1 cut(s) 45
MaeIII GTNAC 4 cut(s) 281, 403, 475, 511
MalI GATC 4 cut(s) 223, 329, 384, 617
MboI GATC 4 cut(s) 221, 327, 382, 615
MluCI AATT 3 cut(s) 23, 31, 467
MlyI GAGTC 3 cut(s) 201, 572, 725
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 8 cut(s) 65, 268, 486, 519, 593, 610, 631, 652
MroNI GCCGGC 1 cut(s) 151
MseI TTAA 3 cut(s) 26, 198, 671
MslI CAYNNNNRTG 1 cut(s) 245
MspA1I CMGCKG 1 cut(s) 84
MspI CCGG 2 cut(s) 131, 152
NaeI GCCGGC 1 cut(s) 153
NdeII GATC 4 cut(s) 221, 327, 382, 615
NgoMIV GCCGGC 1 cut(s) 151
NlaIII CATG 3 cut(s) 487, 519, 616
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 403
NspI RCATGY 1 cut(s) 519
NspV TTCGAA 1 cut(s) 72
PciI ACATGT 1 cut(s) 515
PciSI GCTCTTC 1 cut(s) 222
PcsI WCGNNNNNNNCGW 3 cut(s) 69, 119, 462
PdiI GCCGGC 1 cut(s) 153
PfeI GAWTC 4 cut(s) 119, 341, 431, 571
PkrI GCNGC 2 cut(s) 142, 426
PleI GAGTC 3 cut(s) 201, 571, 725
PpsI GAGTC 3 cut(s) 201, 571, 725
PscI ACATGT 1 cut(s) 515
PsiI TTATAA 1 cut(s) 699
PspN4I GGNNCC 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 84
RseI CAYNNNNRTG 1 cut(s) 245
SalI GTCGAC 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 3 cut(s) 26, 198, 671
SatI GCNGC 2 cut(s) 141, 425
Sau3AI GATC 4 cut(s) 221, 327, 382, 615
SchI GAGTC 3 cut(s) 201, 572, 725
SfaNI GCATC 2 cut(s) 262, 735
SfuI TTCGAA 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 245
Sse9I AATT 3 cut(s) 23, 31, 467
SsiI CCGC 2 cut(s) 641, 667
SspI AATATT 1 cut(s) 166
SspMI CTAG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 549, 628
TaqI TCGA 8 cut(s) 15, 72, 122, 220, 318, 456, 465, 729
TasI AATT 3 cut(s) 23, 31, 467
TfiI GAWTC 4 cut(s) 119, 341, 431, 571
Tru1I TTAA 3 cut(s) 26, 198, 671
Tru9I TTAA 3 cut(s) 26, 198, 671
TscAI CASTG 1 cut(s) 631
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 2 cut(s) 140, 424
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 5 cut(s) 318, 434, 472, 660, 717
TspRI CASTG 1 cut(s) 631
XceI RCATGY 1 cut(s) 519
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.