Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008454

Physical Location & Seq

Genomic Coordinates Reverse (-)

24561231 .. 24568215

Gene Structure 6985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1239700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGACAATATTGGTGATGAGTACAAACATTACTGGGAAACCAATATGTTCCTCCAAACCGAAGAGCTTGACAGTTGGGGTTTGGATGAGGCGTTTTCCGGGTACTACGATTCGAGCTCGCCGGACGGAGCAGCTTCATCCATGGCCTCCAAGAATATTGTGTCTGAGAGGAATAGGAGGAAGAAGCTCAATGAAAGGCTGTTTGCACTTAGAGCTGTGGTCCCCAACATTAGCAAGATGGACAAGGCTTCTATAATCAAAGACGCCATTGAATATATCCAAGAGCTGCATGAACAAGAAAGAAGAATTCAAACAGAGATAGTTGAGCTTGAATCTGGAAAATCAAACAAAAATCAGGGTTCCGATTTCGAACAAGACCTGCCGGTCCTGTTGAGATCAAAGAAGAAGAAAATTGATCAGATCTACGACTCTGAAGGATCAAGAACTTCCACCATCGAAATCCTCGAGCTTAGGGTTACATACATGGGTGAAAAAACAGTGGTAGTGAGCTTGACATGCAGTAAAAGAACGGACACGATGGTAAAATTGTGCGAGGTATTCGAATCTTTGAAGCTCAAAATTATTACCGCGAATATTACTTCTTTCAACGGGAGGGTTTTGAAGACGGTTTTCGTTGAGGCAGACGAAGAAGAAAAAGATGATTTGAAGATAAAAATTGAAACAGCCATTGCAGCTTTGAATGATCCAGAAAGCCCCATGAGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

243

Amino Acids

27.59

Weight (kDa)

4.97

Isoelectric Point (pI)

62.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	53 - 97	5.7e-12	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	156 - 231	3.1e-26	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57150 AT5G57150 AT5G57150 AT5G57150 AT5G57150
fragaria_vesca	FvH4_4g07090 FvH4_4g07090 FvH4_4g07090
malus_domestica	MD13G1239700.v1.1 MD16G1247600.v1.1
prunus_persica	Prupe.1G074400_v2.0.a1 Prupe.1G074400_v2.0.a1
pyrus_communis	pycom16g20780
rosa_chinensis	RchiOBHm_Chr4g0399211
rosa_laevigata	RLG00000009286
rosa_multiflora	Rmu_sc0001556.1_g000007
rosa_roxburghii	Rroxscaffold_5G00344190
rosa_rugosa	Rorug04G0015400 Rorug04G0015500
rosa_samantha	Rh4AG093200 Rh4BG091000 Rh4CG101500
rosa_wichuraiana	Rw4G007670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
Acc36I	ACCTGC	1 cut(s)	387
AccII	CGCG	1 cut(s)	590
AciI	CCGC	1 cut(s)	588
AclWI	GGATC	2 cut(s)	445, 698
AcsI	RAATTY	1 cut(s)	306
AcuI	CTGAAG	1 cut(s)	453
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	2 cut(s)	23, 104
AgsI	TTSAA	9 cut(s)	272, 311, 332, 571, 607, 622, 667, 680, 700
Alw21I	GWGCWC	1 cut(s)	119
AlwI	GGATC	2 cut(s)	445, 698
Ama87I	CYCGRG	1 cut(s)	464
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	3 cut(s)	131, 286, 692
ApoI	RAATTY	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	220, 385
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	26, 500
AsuII	TTCGAA	2 cut(s)	369, 561
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	2 cut(s)	220, 385
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	629
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	3 cut(s)	143, 273, 704
BccI	CCATC	3 cut(s)	232, 461, 532
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	1 cut(s)	100
BfuAI	ACCTGC	1 cut(s)	387
BglII	AGATCT	1 cut(s)	420
BisI	GCNGC	3 cut(s)	132, 287, 693
BlsI	GCNGC	3 cut(s)	133, 288, 694
Bme1390I	CCNGG	1 cut(s)	100
Bme18I	GGWCC	2 cut(s)	220, 385
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	2 cut(s)	220, 385
BmiI	GGNNCC	2 cut(s)	222, 361
BmrFI	CCNGG	1 cut(s)	100
BmrI	ACTGGG	1 cut(s)	43
BmuI	ACTGGG	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	629
Bpu10I	CCTNAGC	1 cut(s)	470
Bpu14I	TTCGAA	2 cut(s)	369, 561
BpuMI	CCSGG	1 cut(s)	100
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	141
Bse118I	RCCGGY	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	687
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	2 cut(s)	91, 137
BseMI	GCAATG	1 cut(s)	687
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	38
BseXI	GCAGC	3 cut(s)	143, 273, 704
Bsh1236I	CGCG	1 cut(s)	590
BshFI	GGCC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	3 cut(s)	99, 122, 383
BslFI	GGGAC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	464
Bsp119I	TTCGAA	2 cut(s)	369, 561
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	5 cut(s)	395, 415, 420, 437, 703
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	1 cut(s)	588
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	590
BspLI	GGNNCC	2 cut(s)	222, 361
BspMI	ACCTGC	1 cut(s)	387
BspPI	GGATC	2 cut(s)	445, 698
BspQI	GCTCTTC	1 cut(s)	57
BspT104I	TTCGAA	2 cut(s)	369, 561
BsrDI	GCAATG	1 cut(s)	687
BsrFI	RCCGGY	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	382
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	5 cut(s)	395, 415, 420, 437, 703
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	141
Bst4CI	ACNGT	3 cut(s)	74, 499, 628
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	264
BstBI	TTCGAA	2 cut(s)	369, 561
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	3 cut(s)	165, 209, 470
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	91, 137
BstFNI	CGCG	1 cut(s)	590
BstKTI	GATC	5 cut(s)	398, 418, 423, 440, 706
BstMBI	GATC	5 cut(s)	395, 415, 420, 437, 703
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 516, 692, 720
BstNSI	RCATGY	1 cut(s)	519
BstSCI	CCNGG	1 cut(s)	98
BstUI	CGCG	1 cut(s)	590
BstV1I	GCAGC	3 cut(s)	143, 273, 704
BstV2I	GAAGAC	1 cut(s)	629
BstX2I	RGATCY	1 cut(s)	420
BstYI	RGATCY	1 cut(s)	420
BsuRI	GGCC	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	91, 137
BtsIMutI	CAGTG	1 cut(s)	504
BveI	ACCTGC	1 cut(s)	387
Cac8I	GCNNGC	1 cut(s)	119
Cfr10I	RCCGGY	1 cut(s)	382
Cfr13I	GGNCC	2 cut(s)	220, 385
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	22, 103
CviAII	CATG	5 cut(s)	142, 290, 484, 516, 718
CviQI	GTAC	2 cut(s)	22, 103
DdeI	CTNAG	3 cut(s)	165, 209, 470
DpnI	GATC	5 cut(s)	397, 417, 422, 439, 705
DpnII	GATC	5 cut(s)	395, 415, 420, 437, 703
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	2 cut(s)	220, 385
Eco53kI	GAGCTC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	453
Eco88I	CYCGRG	1 cut(s)	464
EcoICRI	GAGCTC	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	5 cut(s)	145, 293, 487, 519, 721
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	5 cut(s)	141, 289, 483, 515, 717
FauNDI	CATATG	1 cut(s)	725
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	3 cut(s)	132, 287, 693
FokI	GGATG	2 cut(s)	98, 124
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	132, 287, 693
GluI	GCNGC	3 cut(s)	132, 287, 693
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	3 cut(s)	99, 122, 383
HgaI	GACGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	5 cut(s)	145, 293, 487, 519, 721
HinfI	GANTC	4 cut(s)	110, 332, 428, 563
HpaII	CCGG	3 cut(s)	99, 122, 383
HphI	GGTGA	2 cut(s)	26, 500
Hpy188I	TCNGA	4 cut(s)	166, 364, 420, 433
Hpy188III	TCNNGA	3 cut(s)	336, 441, 707
HpyAV	CCTTC	1 cut(s)	428
HpyCH4III	ACNGT	3 cut(s)	74, 499, 628
HpyCH4V	TGCA	4 cut(s)	206, 289, 519, 692
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 516, 692, 720
HpyF3I	CTNAG	3 cut(s)	165, 209, 470
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	5 cut(s)	145, 293, 487, 519, 721
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	5 cut(s)	395, 415, 420, 437, 703
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	9 cut(s)	19, 112, 135, 321, 341, 392, 396, 401, 720
Lsp1109I	GCAGC	3 cut(s)	143, 273, 704
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	5 cut(s)	397, 417, 422, 439, 705
MboI	GATC	5 cut(s)	395, 415, 420, 437, 703
MboII	GAAGA	9 cut(s)	74, 193, 315, 415, 418, 634, 659, 662, 679
MflI	RGATCY	1 cut(s)	420
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	5 cut(s)	306, 411, 545, 579, 675
MlyI	GAGTC	1 cut(s)	422
MnlI	CCTC	9 cut(s)	62, 82, 157, 162, 171, 473, 547, 606, 631
MspI	CCGG	3 cut(s)	99, 122, 383
MspR9I	CCNGG	1 cut(s)	100
MvnI	CGCG	1 cut(s)	590
MwoI	GCNNNNNNNGC	4 cut(s)	212, 516, 692, 720
NciI	CCSGG	1 cut(s)	100
NcoI	CCATGG	1 cut(s)	141
NdeI	CATATG	1 cut(s)	725
NdeII	GATC	5 cut(s)	395, 415, 420, 437, 703
NlaIII	CATG	5 cut(s)	145, 293, 487, 519, 721
NlaIV	GGNNCC	2 cut(s)	222, 361
NspI	RCATGY	1 cut(s)	519
NspV	TTCGAA	2 cut(s)	369, 561
PaeR7I	CTCGAG	1 cut(s)	464
PciSI	GCTCTTC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PfeI	GAWTC	3 cut(s)	110, 332, 563
PkrI	GCNGC	3 cut(s)	133, 288, 694
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
Psp124BI	GAGCTC	1 cut(s)	119
PspN4I	GGNNCC	2 cut(s)	222, 361
PspPI	GGNCC	2 cut(s)	220, 385
PspXI	VCTCGAGB	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	420
RsaI	GTAC	2 cut(s)	23, 104
RsaNI	GTAC	2 cut(s)	22, 103
SacI	GAGCTC	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	57
SatI	GCNGC	3 cut(s)	132, 287, 693
Sau3AI	GATC	5 cut(s)	395, 415, 420, 437, 703
Sau96I	GGNCC	2 cut(s)	220, 385
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	119
Sfr274I	CTCGAG	1 cut(s)	464
SfuI	TTCGAA	2 cut(s)	369, 561
SinI	GGWCC	2 cut(s)	220, 385
SlaI	CTCGAG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	5 cut(s)	306, 411, 545, 579, 675
SsiI	CCGC	1 cut(s)	588
SspI	AATATT	3 cut(s)	10, 157, 595
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	3 cut(s)	74, 499, 628
TaqI	TCGA	5 cut(s)	113, 369, 456, 465, 561
TasI	AATT	5 cut(s)	306, 411, 545, 579, 675
TatI	WGTACW	1 cut(s)	21
TfiI	GAWTC	3 cut(s)	110, 332, 563
TscAI	CASTG	1 cut(s)	504
TseI	GCWGC	3 cut(s)	131, 286, 692
TspDTI	ATGAA	3 cut(s)	126, 207, 306
TspGWI	ACGGA	2 cut(s)	141, 545
TspRI	CASTG	1 cut(s)	504
VpaK11BI	GGWCC	2 cut(s)	220, 385
XapI	RAATTY	1 cut(s)	306
XceI	RCATGY	1 cut(s)	519
XhoI	CTCGAG	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.