transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G57150 AT5G57150 AT5G57150 AT5G57150 AT5G57150 |
| fragaria_vesca | FvH4_4g07090 FvH4_4g07090 FvH4_4g07090 |
| malus_domestica | MD13G1239700.v1.1 MD16G1247600.v1.1 |
| prunus_persica | Prupe.1G074400_v2.0.a1 Prupe.1G074400_v2.0.a1 |
| pyrus_communis | pycom16g20780 |
| rosa_chinensis | RchiOBHm_Chr4g0399211 |
| rosa_laevigata | RLG00000009286 |
| rosa_multiflora | Rmu_sc0001556.1_g000007 |
| rosa_roxburghii | Rroxscaffold_5G00344190 |
| rosa_rugosa | Rorug04G0015400 Rorug04G0015500 |
| rosa_samantha | Rh4AG093200 Rh4BG091000 Rh4CG101500 |
| rosa_wichuraiana | Rw4G007670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 23, 503 |
| AatII | GACGTC | 1 cut(s) | 21 |
| AccII | CGCG | 1 cut(s) | 710 |
| AccIII | TCCGGA | 1 cut(s) | 728 |
| AciI | CCGC | 2 cut(s) | 114, 708 |
| AclWI | GGATC | 1 cut(s) | 786 |
| AcsI | RAATTY | 2 cut(s) | 426, 564 |
| AcyI | GRCGYC | 1 cut(s) | 18 |
| AfaI | GTAC | 2 cut(s) | 140, 224 |
| AgeI | ACCGGT | 1 cut(s) | 502 |
| AgsI | TTSAA | 3 cut(s) | 431, 452, 691 |
| AluBI | AGCT | 9 cut(s) | 184, 237, 254, 307, 406, 448, 589, 630, 694 |
| AluI | AGCT | 9 cut(s) | 184, 237, 254, 307, 406, 448, 589, 630, 694 |
| Alw21I | GWGCWC | 2 cut(s) | 239, 540 |
| Alw26I | GTCTC | 2 cut(s) | 31, 742 |
| AlwI | GGATC | 1 cut(s) | 786 |
| Ama87I | CYCGRG | 1 cut(s) | 584 |
| Aor13HI | TCCGGA | 1 cut(s) | 728 |
| AoxI | GGCC | 1 cut(s) | 264 |
| ApeKI | GCWGC | 2 cut(s) | 251, 406 |
| ApoI | RAATTY | 2 cut(s) | 426, 564 |
| AsiGI | ACCGGT | 1 cut(s) | 502 |
| AspS9I | GGNCC | 2 cut(s) | 340, 505 |
| AsuHPI | GGTGA | 2 cut(s) | 620, 637 |
| AsuII | TTCGAA | 2 cut(s) | 489, 681 |
| AvaI | CYCGRG | 1 cut(s) | 584 |
| AvaII | GGWCC | 2 cut(s) | 340, 505 |
| BanII | GRGCYC | 1 cut(s) | 239 |
| BbsI | GAAGAC | 1 cut(s) | 749 |
| Bbv12I | GWGCWC | 2 cut(s) | 239, 540 |
| BbvI | GCAGC | 2 cut(s) | 263, 393 |
| BccI | CCATC | 1 cut(s) | 352 |
| BcoDI | GTCTC | 2 cut(s) | 31, 742 |
| BfmI | CTRYAG | 1 cut(s) | 107 |
| BisI | GCNGC | 2 cut(s) | 252, 407 |
| BlsI | GCNGC | 2 cut(s) | 253, 408 |
| Bme18I | GGWCC | 2 cut(s) | 340, 505 |
| BmeT110I | CYCGRG | 1 cut(s) | 584 |
| BmgT120I | GGNCC | 2 cut(s) | 340, 505 |
| BmiI | GGNNCC | 2 cut(s) | 342, 481 |
| BmrI | ACTGGG | 1 cut(s) | 160 |
| BmuI | ACTGGG | 1 cut(s) | 160 |
| BpiI | GAAGAC | 1 cut(s) | 749 |
| Bpu10I | CCTNAGC | 1 cut(s) | 590 |
| Bpu14I | TTCGAA | 2 cut(s) | 489, 681 |
| Bsa29I | ATCGAT | 1 cut(s) | 781 |
| BsaHI | GRCGYC | 1 cut(s) | 18 |
| BsaI | GGTCTC | 1 cut(s) | 742 |
| BsaJI | CCNNGG | 1 cut(s) | 117 |
| BsaWI | WCCGGW | 2 cut(s) | 502, 728 |
| Bse118I | RCCGGY | 1 cut(s) | 502 |
| Bse1I | ACTGG | 1 cut(s) | 155 |
| BseAI | TCCGGA | 1 cut(s) | 728 |
| BseCI | ATCGAT | 1 cut(s) | 781 |
| BseDI | CCNNGG | 1 cut(s) | 117 |
| BseGI | GGATG | 1 cut(s) | 211 |
| BseMII | CTCAG | 1 cut(s) | 276 |
| BseNI | ACTGG | 1 cut(s) | 155 |
| BseXI | GCAGC | 2 cut(s) | 263, 393 |
| Bsh1236I | CGCG | 1 cut(s) | 710 |
| BshFI | GGCC | 1 cut(s) | 266 |
| BshTI | ACCGGT | 1 cut(s) | 502 |
| BshVI | ATCGAT | 1 cut(s) | 781 |
| BsiHKAI | GWGCWC | 2 cut(s) | 239, 540 |
| BsiHKCI | CYCGRG | 1 cut(s) | 584 |
| BsiSI | CCGG | 3 cut(s) | 242, 503, 729 |
| BslFI | GGGAC | 1 cut(s) | 326 |
| BsmAI | GTCTC | 2 cut(s) | 31, 742 |
| BsmFI | GGGAC | 1 cut(s) | 326 |
| BsnI | GGCC | 1 cut(s) | 266 |
| Bso31I | GGTCTC | 1 cut(s) | 742 |
| BsoBI | CYCGRG | 1 cut(s) | 584 |
| Bsp119I | TTCGAA | 2 cut(s) | 489, 681 |
| Bsp1286I | GDGCHC | 2 cut(s) | 239, 540 |
| Bsp13I | TCCGGA | 1 cut(s) | 728 |
| Bsp143I | GATC | 2 cut(s) | 778, 782 |
| Bsp19I | CCATGG | 1 cut(s) | 117 |
| BspACI | CCGC | 2 cut(s) | 114, 708 |
| BspANI | GGCC | 1 cut(s) | 266 |
| BspCNI | CTCAG | 1 cut(s) | 277 |
| BspDI | ATCGAT | 1 cut(s) | 781 |
| BspEI | TCCGGA | 1 cut(s) | 728 |
| BspFNI | CGCG | 1 cut(s) | 710 |
| BspLI | GGNNCC | 2 cut(s) | 342, 481 |
| BspPI | GGATC | 1 cut(s) | 786 |
| BspQI | GCTCTTC | 1 cut(s) | 174 |
| BspT104I | TTCGAA | 2 cut(s) | 489, 681 |
| BspTNI | GGTCTC | 1 cut(s) | 742 |
| BsrFI | RCCGGY | 1 cut(s) | 502 |
| BsrI | ACTGG | 1 cut(s) | 155 |
| BssAI | RCCGGY | 1 cut(s) | 502 |
| BssECI | CCNNGG | 1 cut(s) | 117 |
| BssMI | GATC | 2 cut(s) | 778, 782 |
| BssNI | GRCGYC | 1 cut(s) | 18 |
| BssT1I | CCWWGG | 1 cut(s) | 117 |
| Bst4CI | ACNGT | 4 cut(s) | 25, 111, 551, 748 |
| Bst6I | CTCTTC | 1 cut(s) | 174 |
| BstACI | GRCGYC | 1 cut(s) | 18 |
| BstBI | TTCGAA | 2 cut(s) | 489, 681 |
| BstC8I | GCNNGC | 1 cut(s) | 239 |
| BstDEI | CTNAG | 3 cut(s) | 285, 329, 590 |
| BstDSI | CCRYGG | 1 cut(s) | 117 |
| BstF5I | GGATG | 1 cut(s) | 211 |
| BstFNI | CGCG | 1 cut(s) | 710 |
| BstKTI | GATC | 2 cut(s) | 781, 785 |
| BstMAI | GTCTC | 2 cut(s) | 31, 742 |
| BstMBI | GATC | 2 cut(s) | 778, 782 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 332, 636 |
| BstNSI | RCATGY | 1 cut(s) | 639 |
| BstSFI | CTRYAG | 1 cut(s) | 107 |
| BstUI | CGCG | 1 cut(s) | 710 |
| BstV1I | GCAGC | 2 cut(s) | 263, 393 |
| BstV2I | GAAGAC | 1 cut(s) | 749 |
| Bsu15I | ATCGAT | 1 cut(s) | 781 |
| BsuRI | GGCC | 1 cut(s) | 266 |
| BsuTUI | ATCGAT | 1 cut(s) | 781 |
| BtgI | CCRYGG | 1 cut(s) | 117 |
| BtsCI | GGATG | 1 cut(s) | 211 |
| BtsI | GCAGTG | 1 cut(s) | 342 |
| BtsIMutI | CAGTG | 2 cut(s) | 21, 342 |
| Cac8I | GCNNGC | 1 cut(s) | 239 |
| Cfr10I | RCCGGY | 1 cut(s) | 502 |
| Cfr13I | GGNCC | 2 cut(s) | 340, 505 |
| ClaI | ATCGAT | 1 cut(s) | 781 |
| CseI | GACGC | 1 cut(s) | 392 |
| Csp6I | GTAC | 2 cut(s) | 139, 223 |
| CspAI | ACCGGT | 1 cut(s) | 502 |
| CviAII | CATG | 5 cut(s) | 118, 262, 410, 604, 636 |
| CviQI | GTAC | 2 cut(s) | 139, 223 |
| DdeI | CTNAG | 3 cut(s) | 285, 329, 590 |
| DpnI | GATC | 2 cut(s) | 780, 784 |
| DpnII | GATC | 2 cut(s) | 778, 782 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 23, 503 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 23, 503 |
| Eam1104I | CTCTTC | 1 cut(s) | 174 |
| EarI | CTCTTC | 1 cut(s) | 174 |
| EciI | GGCGGA | 1 cut(s) | 103 |
| Ecl136II | GAGCTC | 1 cut(s) | 237 |
| Eco130I | CCWWGG | 1 cut(s) | 117 |
| Eco24I | GRGCYC | 1 cut(s) | 239 |
| Eco31I | GGTCTC | 1 cut(s) | 742 |
| Eco47I | GGWCC | 2 cut(s) | 340, 505 |
| Eco53kI | GAGCTC | 1 cut(s) | 237 |
| Eco88I | CYCGRG | 1 cut(s) | 584 |
| EcoICRI | GAGCTC | 1 cut(s) | 237 |
| EcoRI | GAATTC | 1 cut(s) | 426 |
| EcoT14I | CCWWGG | 1 cut(s) | 117 |
| EcoT38I | GRGCYC | 1 cut(s) | 239 |
| ErhI | CCWWGG | 1 cut(s) | 117 |
| FaeI | CATG | 5 cut(s) | 121, 265, 413, 607, 639 |
| FaqI | GGGAC | 1 cut(s) | 326 |
| FatI | CATG | 5 cut(s) | 117, 261, 409, 603, 635 |
| Fnu4HI | GCNGC | 2 cut(s) | 252, 407 |
| FokI | GGATG | 1 cut(s) | 218 |
| FriOI | GRGCYC | 1 cut(s) | 239 |
| Fsp4HI | GCNGC | 2 cut(s) | 252, 407 |
| GluI | GCNGC | 2 cut(s) | 252, 407 |
| HaeIII | GGCC | 1 cut(s) | 266 |
| HapII | CCGG | 3 cut(s) | 242, 503, 729 |
| HgaI | GACGC | 1 cut(s) | 392 |
| Hin1I | GRCGYC | 1 cut(s) | 18 |
| Hin1II | CATG | 5 cut(s) | 121, 265, 413, 607, 639 |
| HinfI | GANTC | 6 cut(s) | 4, 63, 230, 452, 557, 683 |
| HpaII | CCGG | 3 cut(s) | 242, 503, 729 |
| HphI | GGTGA | 2 cut(s) | 620, 637 |
| Hpy188I | TCNGA | 4 cut(s) | 58, 286, 484, 787 |
| Hpy188III | TCNNGA | 4 cut(s) | 456, 561, 729, 739 |
| Hpy99I | CGWCG | 2 cut(s) | 20, 62 |
| HpyAV | CCTTC | 2 cut(s) | 268, 726 |
| HpyCH4III | ACNGT | 4 cut(s) | 25, 111, 551, 748 |
| HpyCH4IV | ACGT | 2 cut(s) | 18, 617 |
| HpyCH4V | TGCA | 3 cut(s) | 326, 409, 639 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 332, 636 |
| HpyF3I | CTNAG | 3 cut(s) | 285, 329, 590 |
| HpySE526I | ACGT | 2 cut(s) | 18, 617 |
| Hsp92I | GRCGYC | 1 cut(s) | 18 |
| Hsp92II | CATG | 5 cut(s) | 121, 265, 413, 607, 639 |
| Kpn2I | TCCGGA | 1 cut(s) | 728 |
| Kzo9I | GATC | 2 cut(s) | 778, 782 |
| LguI | GCTCTTC | 1 cut(s) | 174 |
| LmnI | GCTCC | 1 cut(s) | 248 |
| LpnPI | CCDG | 7 cut(s) | 136, 255, 280, 441, 516, 521, 742 |
| Lsp1109I | GCAGC | 2 cut(s) | 263, 393 |
| MaeII | ACGT | 2 cut(s) | 18, 617 |
| MaeIII | GTNAC | 2 cut(s) | 19, 595 |
| MalI | GATC | 2 cut(s) | 780, 784 |
| MboI | GATC | 2 cut(s) | 778, 782 |
| MboII | GAAGA | 8 cut(s) | 191, 435, 535, 538, 754, 779, 782, 800 |
| MhlI | GDGCHC | 2 cut(s) | 239, 540 |
| MluCI | AATT | 5 cut(s) | 145, 426, 564, 665, 796 |
| MlyI | GAGTC | 1 cut(s) | 57 |
| MmeI | TCCRAC | 1 cut(s) | 81 |
| MroI | TCCGGA | 1 cut(s) | 728 |
| MslI | CAYNNNNRTG | 1 cut(s) | 543 |
| MspI | CCGG | 3 cut(s) | 242, 503, 729 |
| MvnI | CGCG | 1 cut(s) | 710 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 332, 636 |
| NcoI | CCATGG | 1 cut(s) | 117 |
| NdeII | GATC | 2 cut(s) | 778, 782 |
| NlaIII | CATG | 5 cut(s) | 121, 265, 413, 607, 639 |
| NlaIV | GGNNCC | 2 cut(s) | 342, 481 |
| NmuCI | GTSAC | 1 cut(s) | 19 |
| NspI | RCATGY | 1 cut(s) | 639 |
| NspV | TTCGAA | 2 cut(s) | 489, 681 |
| PaeR7I | CTCGAG | 1 cut(s) | 584 |
| PciSI | GCTCTTC | 1 cut(s) | 174 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 582 |
| PfeI | GAWTC | 4 cut(s) | 230, 452, 557, 683 |
| PinAI | ACCGGT | 1 cut(s) | 502 |
| PkrI | GCNGC | 2 cut(s) | 253, 408 |
| PleI | GAGTC | 1 cut(s) | 57 |
| PpsI | GAGTC | 1 cut(s) | 57 |
| Psp124BI | GAGCTC | 1 cut(s) | 239 |
| PspN4I | GGNNCC | 2 cut(s) | 342, 481 |
| PspPI | GGNCC | 2 cut(s) | 340, 505 |
| PspXI | VCTCGAGB | 1 cut(s) | 584 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 483, 515 |
| RsaI | GTAC | 2 cut(s) | 140, 224 |
| RsaNI | GTAC | 2 cut(s) | 139, 223 |
| RseI | CAYNNNNRTG | 1 cut(s) | 543 |
| SacI | GAGCTC | 1 cut(s) | 239 |
| SapI | GCTCTTC | 1 cut(s) | 174 |
| SatI | GCNGC | 2 cut(s) | 252, 407 |
| Sau3AI | GATC | 2 cut(s) | 778, 782 |
| Sau96I | GGNCC | 2 cut(s) | 340, 505 |
| SchI | GAGTC | 1 cut(s) | 57 |
| SduI | GDGCHC | 2 cut(s) | 239, 540 |
| SfcI | CTRYAG | 1 cut(s) | 107 |
| Sfr274I | CTCGAG | 1 cut(s) | 584 |
| SfuI | TTCGAA | 2 cut(s) | 489, 681 |
| SinI | GGWCC | 2 cut(s) | 340, 505 |
| SlaI | CTCGAG | 1 cut(s) | 584 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 543 |
| SmlI | CTYRAG | 1 cut(s) | 584 |
| SmoI | CTYRAG | 1 cut(s) | 584 |
| Sse9I | AATT | 5 cut(s) | 145, 426, 564, 665, 796 |
| SsiI | CCGC | 2 cut(s) | 114, 708 |
| SspI | AATATT | 2 cut(s) | 277, 715 |
| SstI | GAGCTC | 1 cut(s) | 239 |
| StyI | CCWWGG | 1 cut(s) | 117 |
| TaaI | ACNGT | 4 cut(s) | 25, 111, 551, 748 |
| TaiI | ACGT | 2 cut(s) | 21, 620 |
| TaqI | TCGA | 9 cut(s) | 15, 233, 489, 534, 576, 585, 681, 740, 781 |
| TasI | AATT | 5 cut(s) | 145, 426, 564, 665, 796 |
| TatI | WGTACW | 1 cut(s) | 138 |
| TfiI | GAWTC | 4 cut(s) | 230, 452, 557, 683 |
| TscAI | CASTG | 2 cut(s) | 28, 342 |
| TseFI | GTSAC | 1 cut(s) | 19 |
| TseI | GCWGC | 2 cut(s) | 251, 406 |
| Tsp45I | GTSAC | 1 cut(s) | 19 |
| TspDTI | ATGAA | 4 cut(s) | 40, 250, 327, 426 |
| TspGWI | ACGGA | 3 cut(s) | 75, 261, 665 |
| TspRI | CASTG | 2 cut(s) | 28, 342 |
| VpaK11BI | GGWCC | 2 cut(s) | 340, 505 |
| XapI | RAATTY | 2 cut(s) | 426, 564 |
| XceI | RCATGY | 1 cut(s) | 639 |
| XhoI | CTCGAG | 1 cut(s) | 584 |
| ZraI | GACGTC | 1 cut(s) | 19 |