Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008454

Physical Location & Seq

Genomic Coordinates Forward (+)

5331904 .. 5336485

Gene Structure 4582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G074400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGACAACATTGGTGATGAGTACAAACATTACTGGGAAACCAATATGTTCCTCCAAAGTGAAGAGCTTGACAGCTGGGGATTGGATGAGGCTTTTTCTGGGTACTATGATTCCAGCTCACCAGATGGAGGAGCTTCTTCCATGGCCTCCAAAAACATTGTGTCTGAAAGGAACAGGAGGAAGAAGCTCAACGAAAGGCTCTTTGCTCTTAGAGCAGTGGTCCCCAAAATAAGCAAGATGGATAAGGCTTCTATAATCAAAGACGCCATTGACTACATCCAGGAGCTTCATGAACAAGAAAGAAGAATTCAGACAGAGATAGGGGAGCTAGAATCTGGGAGATCAAAGAAAAATCTGGGTTCTGAATTTGATCAAGAGCTGCCAGTCTTGTTGAGGTCAAAGAAGAAGAAAATTGAGCAGCTCTATGATTCCGGAGGATCAAGAACTTCCACCATTGAAGTGCTTGAACTTAGGGTTACATATATGGGGGAAAAGACAGTGGTGGCTAGCTTGACATGCAGCAAAAGAACGGACACAATGGTAAAATTGTGTGAGGTCTTCGAATCTTTGAAGCTCAAAATCATTACAGCAAATATTACTGCTTTCTCTGGGAGAGTCTTGAAGACAGTCTTCATTGAGGCAGATGAAGAAGAAAAAGATCATTTGAAGATTAAAATTGAAACAGCCATTGCAGCTTTGAATGATCCACAAAGCCCCATGAGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

243

Amino Acids

27.46

Weight (kDa)

5.48

Isoelectric Point (pI)

67.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57150 AT5G57150 AT5G57150 AT5G57150 AT5G57150
fragaria_vesca	FvH4_4g07090 FvH4_4g07090 FvH4_4g07090
malus_domestica	MD13G1239700.v1.1 MD16G1247600.v1.1
prunus_persica	Prupe.1G074400_v2.0.a1 Prupe.1G074400_v2.0.a1
pyrus_communis	pycom16g20780
rosa_chinensis	RchiOBHm_Chr4g0399211
rosa_laevigata	RLG00000009286
rosa_multiflora	Rmu_sc0001556.1_g000007
rosa_roxburghii	Rroxscaffold_5G00344190
rosa_rugosa	Rorug04G0015400 Rorug04G0015500
rosa_samantha	Rh4AG093200 Rh4BG091000 Rh4CG101500
rosa_wichuraiana	Rw4G007670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	431
AclWI	GGATC	2 cut(s)	445, 698
AcsI	RAATTY	2 cut(s)	306, 365
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	2 cut(s)	23, 104
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	7 cut(s)	458, 467, 571, 622, 667, 680, 700
AjnI	CCWGG	1 cut(s)	279
AlwI	GGATC	2 cut(s)	445, 698
Aor13HI	TCCGGA	1 cut(s)	431
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	4 cut(s)	379, 418, 519, 692
ApoI	RAATTY	2 cut(s)	306, 365
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	26, 111
AsuII	TTCGAA	1 cut(s)	561
AsuNHI	GCTAGC	1 cut(s)	506
AvaII	GGWCC	1 cut(s)	220
BbsI	GAAGAC	3 cut(s)	550, 622, 629
BbvI	GCAGC	4 cut(s)	366, 430, 531, 704
BccI	CCATC	2 cut(s)	119, 232
BciT130I	CCWGG	1 cut(s)	281
BclI	TGATCA	1 cut(s)	370
BfaI	CTAG	2 cut(s)	329, 507
BisI	GCNGC	4 cut(s)	380, 419, 520, 693
BlsI	GCNGC	4 cut(s)	381, 420, 521, 694
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	281
BmrI	ACTGGG	1 cut(s)	43
BmtI	GCTAGC	1 cut(s)	510
BmuI	ACTGGG	1 cut(s)	43
BpiI	GAAGAC	3 cut(s)	550, 622, 629
Bpu14I	TTCGAA	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	2 cut(s)	38, 383
Bse3DI	GCAATG	1 cut(s)	687
BseAI	TCCGGA	1 cut(s)	431
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	2 cut(s)	91, 276
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMI	GCAATG	1 cut(s)	687
BseNI	ACTGG	2 cut(s)	38, 383
BseRI	GAGGAG	1 cut(s)	144
BseXI	GCAGC	4 cut(s)	366, 430, 531, 704
BseYI	CCCAGC	1 cut(s)	75
BshFI	GGCC	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	146
Bsp119I	TTCGAA	1 cut(s)	561
Bsp13I	TCCGGA	1 cut(s)	431
Bsp143I	GATC	5 cut(s)	341, 370, 437, 658, 703
Bsp19I	CCATGG	1 cut(s)	141
BspANI	GGCC	1 cut(s)	146
BspEI	TCCGGA	1 cut(s)	431
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	222
BspOI	GCTAGC	1 cut(s)	510
BspPI	GGATC	2 cut(s)	445, 698
BspQI	GCTCTTC	1 cut(s)	57
BspT104I	TTCGAA	1 cut(s)	561
BsrDI	GCAATG	1 cut(s)	687
BsrI	ACTGG	2 cut(s)	38, 383
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	5 cut(s)	341, 370, 437, 658, 703
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	2 cut(s)	499, 628
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	264
BstBI	TTCGAA	1 cut(s)	561
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	2 cut(s)	209, 470
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	91, 276
BstKTI	GATC	5 cut(s)	344, 373, 440, 661, 706
BstMBI	GATC	5 cut(s)	341, 370, 437, 658, 703
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 516, 692, 720
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	519
BstSCI	CCNGG	1 cut(s)	279
BstV1I	GCAGC	4 cut(s)	366, 430, 531, 704
BstV2I	GAAGAC	3 cut(s)	550, 622, 629
BsuRI	GGCC	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	91, 276
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	222, 504
Cac8I	GCNNGC	1 cut(s)	508
CciI	TCATGA	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	220
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	22, 103
CviAII	CATG	4 cut(s)	142, 290, 516, 718
CviQI	GTAC	2 cut(s)	22, 103
DdeI	CTNAG	2 cut(s)	209, 470
DpnI	GATC	5 cut(s)	343, 372, 439, 660, 705
DpnII	GATC	5 cut(s)	341, 370, 437, 658, 703
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	4 cut(s)	145, 293, 519, 721
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	4 cut(s)	141, 289, 515, 717
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	4 cut(s)	380, 419, 520, 693
FokI	GGATG	2 cut(s)	98, 263
Fsp4HI	GCNGC	4 cut(s)	380, 419, 520, 693
FspBI	CTAG	2 cut(s)	329, 507
GluI	GCNGC	4 cut(s)	380, 419, 520, 693
GsaI	CCCAGC	1 cut(s)	79
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	1 cut(s)	432
HgaI	GACGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	4 cut(s)	145, 293, 519, 721
HinfI	GANTC	5 cut(s)	110, 332, 428, 563, 615
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	2 cut(s)	26, 111
Hpy188I	TCNGA	3 cut(s)	166, 312, 364
Hpy188III	TCNNGA	5 cut(s)	290, 374, 432, 441, 619
HpyCH4III	ACNGT	2 cut(s)	499, 628
HpyCH4V	TGCA	2 cut(s)	519, 692
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 516, 692, 720
HpyF3I	CTNAG	2 cut(s)	209, 470
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	4 cut(s)	145, 293, 519, 721
Kpn2I	TCCGGA	1 cut(s)	431
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	5 cut(s)	341, 370, 437, 658, 703
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	3 cut(s)	131, 283, 325
Lsp1109I	GCAGC	4 cut(s)	366, 430, 531, 704
MaeI	CTAG	2 cut(s)	329, 507
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	5 cut(s)	343, 372, 439, 660, 705
MboI	GATC	5 cut(s)	341, 370, 437, 658, 703
MluCI	AATT	5 cut(s)	306, 365, 411, 545, 675
MlyI	GAGTC	1 cut(s)	624
MnlI	CCTC	9 cut(s)	62, 82, 122, 157, 171, 387, 428, 547, 631
MroI	TCCGGA	1 cut(s)	431
MseI	TTAA	1 cut(s)	672
MslI	CAYNNNNRTG	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	75
MspI	CCGG	1 cut(s)	432
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	4 cut(s)	212, 516, 692, 720
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	5 cut(s)	341, 370, 437, 658, 703
NheI	GCTAGC	1 cut(s)	506
NlaIII	CATG	4 cut(s)	145, 293, 519, 721
NlaIV	GGNNCC	1 cut(s)	222
NspI	RCATGY	1 cut(s)	519
NspV	TTCGAA	1 cut(s)	561
PagI	TCATGA	1 cut(s)	289
PciSI	GCTCTTC	1 cut(s)	57
PfeI	GAWTC	4 cut(s)	110, 332, 428, 563
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	4 cut(s)	381, 420, 521, 694
PleI	GAGTC	1 cut(s)	623
PpsI	GAGTC	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	279
PspFI	CCCAGC	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	75
RsaI	GTAC	2 cut(s)	23, 104
RsaNI	GTAC	2 cut(s)	22, 103
RseI	CAYNNNNRTG	1 cut(s)	458
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	4 cut(s)	380, 419, 520, 693
Sau3AI	GATC	5 cut(s)	341, 370, 437, 658, 703
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	624
ScrFI	CCNGG	1 cut(s)	281
SfuI	TTCGAA	1 cut(s)	561
SinI	GGWCC	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	458
Sse9I	AATT	5 cut(s)	306, 365, 411, 545, 675
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	2 cut(s)	329, 507
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	499, 628
TaqI	TCGA	1 cut(s)	561
TasI	AATT	5 cut(s)	306, 365, 411, 545, 675
TatI	WGTACW	1 cut(s)	21
TfiI	GAWTC	4 cut(s)	110, 332, 428, 563
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	2 cut(s)	222, 504
TseI	GCWGC	4 cut(s)	379, 418, 519, 692
TspDTI	ATGAA	4 cut(s)	278, 306, 622, 660
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	2 cut(s)	222, 504
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	2 cut(s)	306, 365
XceI	RCATGY	1 cut(s)	519
XspI	CTAG	2 cut(s)	329, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.