Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008454

Physical Location & Seq

Genomic Coordinates Forward (+)

14178106 .. 14181674

Gene Structure 3569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGACAACATTGGTGATGAATACAAGCATTACTGGGAAACCAACATGTTCCTCCAAACCGAAGAGCTCGACAGTTGGGGATTGGATGAAGCGTTTTCTGGGTACTACGATTCGAGCTCGCCGGACGGAGCAGCGTCGTCCATGACCTCCAAGAACATTGTTTCAGAGAGGAACAGGAGGAAGAAGCTCAATGAGAGGCTCTTTGCTCTTAGAGCAGTGGTCCCCAACATTAGCAAGATGGATAAGGCTTCTATAATCAAAGACGCCATTGACTACATCCAAGAGCTTCATGATCAAGAAAAAAGAATTCAAGCGGAGATCATGGATTTGGAATCTGGAAAATCAAAGAAGGGTGCTATTGGTAGTTCGGACTTCGAACAAGAGCTTCCGGTCTTGTTGAGATCGAAGAAGAAGAAAACCGAGCAGCTTTATGATTCTGGAGGATCAAGAACTTCCTCCATCGAAGTCCTTGAACTTAGGGTTACATACATGGGGGAAAAGACAGTGGTGGTGAGCTTGACATGTAGTAAGAGAACAGACACAATGGTGAAACTGTGCGAGGTCTTCGAATCCCTGAAGCTCAAAATCATTACAGCTAATATCACCGCTTTTTCTGGGAGGGTATTGAAAACAGTCTTCATTGAGGCAGATGAAGAAGAGAAGGACCATTTGAAGGTAAAAATTGAAACAGCTATTGCAGCATTGAATGACCCACAAAGCCCCATGAGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

244

Amino Acids

27.55

Weight (kDa)

5.34

Isoelectric Point (pI)

61.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	52 - 97	4.8e-12	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	158 - 233	1.2e-25	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57150 AT5G57150 AT5G57150 AT5G57150 AT5G57150
fragaria_vesca	FvH4_4g07090 FvH4_4g07090 FvH4_4g07090
malus_domestica	MD13G1239700.v1.1 MD16G1247600.v1.1
prunus_persica	Prupe.1G074400_v2.0.a1 Prupe.1G074400_v2.0.a1
pyrus_communis	pycom16g20780
rosa_chinensis	RchiOBHm_Chr4g0399211
rosa_laevigata	RLG00000009286
rosa_multiflora	Rmu_sc0001556.1_g000007
rosa_roxburghii	Rroxscaffold_5G00344190
rosa_rugosa	Rorug04G0015400 Rorug04G0015500
rosa_samantha	Rh4AG093200 Rh4BG091000 Rh4CG101500
rosa_wichuraiana	Rw4G007670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	314, 606
AclWI	GGATC	1 cut(s)	451
AcsI	RAATTY	1 cut(s)	306
AcuI	CTGAAG	1 cut(s)	596
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	673
AflIII	ACRYGT	2 cut(s)	45, 521
AgsI	TTSAA	6 cut(s)	311, 473, 628, 673, 686, 706
AleI	CACNNNNGTG	1 cut(s)	545
Alw21I	GWGCWC	2 cut(s)	69, 119
AlwI	GGATC	1 cut(s)	451
ApeKI	GCWGC	3 cut(s)	131, 424, 698
ApoI	RAATTY	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	220, 664
AsuHPI	GGTGA	4 cut(s)	26, 523, 559, 595
AsuII	TTCGAA	2 cut(s)	375, 567
AvaII	GGWCC	2 cut(s)	220, 664
BanII	GRGCYC	2 cut(s)	69, 119
BbsI	GAAGAC	2 cut(s)	556, 628
Bbv12I	GWGCWC	2 cut(s)	69, 119
BbvI	GCAGC	3 cut(s)	143, 436, 710
BccI	CCATC	2 cut(s)	232, 467
BclI	TGATCA	1 cut(s)	292
BisI	GCNGC	3 cut(s)	132, 425, 699
BlsI	GCNGC	3 cut(s)	133, 426, 700
Bme18I	GGWCC	2 cut(s)	220, 664
BmgT120I	GGNCC	2 cut(s)	220, 664
BmiI	GGNNCC	1 cut(s)	222
BmrI	ACTGGG	1 cut(s)	43
BmuI	ACTGGG	1 cut(s)	43
BpiI	GAAGAC	2 cut(s)	556, 628
BpmI	CTGGAG	1 cut(s)	459
Bpu14I	TTCGAA	2 cut(s)	375, 567
BsaHI	GRCGYC	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	1 cut(s)	673
Bse1I	ACTGG	1 cut(s)	38
BseGI	GGATG	2 cut(s)	91, 276
BseLI	CCNNNNNNNGG	1 cut(s)	673
BseNI	ACTGG	1 cut(s)	38
BseXI	GCAGC	3 cut(s)	143, 436, 710
BsiHKAI	GWGCWC	2 cut(s)	69, 119
BsiSI	CCGG	2 cut(s)	122, 389
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	673
BsmFI	GGGAC	1 cut(s)	206
Bsp119I	TTCGAA	2 cut(s)	375, 567
Bsp1286I	GDGCHC	2 cut(s)	69, 119
Bsp143I	GATC	4 cut(s)	292, 318, 401, 443
BspACI	CCGC	2 cut(s)	314, 606
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	1 cut(s)	451
BspQI	GCTCTTC	1 cut(s)	57
BspT104I	TTCGAA	2 cut(s)	375, 567
BsrI	ACTGG	1 cut(s)	38
BssMI	GATC	4 cut(s)	292, 318, 401, 443
BssNI	GRCGYC	1 cut(s)	264
Bst4CI	ACNGT	4 cut(s)	74, 505, 555, 634
Bst6I	CTCTTC	2 cut(s)	57, 651
BstACI	GRCGYC	1 cut(s)	264
BstBI	TTCGAA	2 cut(s)	375, 567
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	2 cut(s)	209, 476
BstF5I	GGATG	2 cut(s)	91, 276
BstKTI	GATC	4 cut(s)	295, 321, 404, 446
BstMBI	GATC	4 cut(s)	292, 318, 401, 443
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 698, 726
BstNSI	RCATGY	2 cut(s)	49, 525
BstV1I	GCAGC	3 cut(s)	143, 436, 710
BstV2I	GAAGAC	2 cut(s)	556, 628
BtsCI	GGATG	2 cut(s)	91, 276
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	222, 510
Cac8I	GCNNGC	1 cut(s)	119
CciI	TCATGA	1 cut(s)	289
Cfr13I	GGNCC	2 cut(s)	220, 664
CseI	GACGC	2 cut(s)	123, 272
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	7 cut(s)	46, 142, 290, 322, 490, 522, 724
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	209, 476
DpnI	GATC	4 cut(s)	294, 320, 403, 445
DpnII	GATC	4 cut(s)	292, 318, 401, 443
Eam1104I	CTCTTC	2 cut(s)	57, 651
EarI	CTCTTC	2 cut(s)	57, 651
Ecl136II	GAGCTC	2 cut(s)	67, 117
Eco24I	GRGCYC	2 cut(s)	69, 119
Eco47I	GGWCC	2 cut(s)	220, 664
Eco53kI	GAGCTC	2 cut(s)	67, 117
Eco57I	CTGAAG	1 cut(s)	596
EcoICRI	GAGCTC	2 cut(s)	67, 117
EcoRI	GAATTC	1 cut(s)	306
EcoT38I	GRGCYC	2 cut(s)	69, 119
FaeI	CATG	7 cut(s)	49, 145, 293, 325, 493, 525, 727
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	7 cut(s)	45, 141, 289, 321, 489, 521, 723
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	3 cut(s)	132, 425, 699
FokI	GGATG	2 cut(s)	98, 263
FriOI	GRGCYC	2 cut(s)	69, 119
Fsp4HI	GCNGC	3 cut(s)	132, 425, 699
GluI	GCNGC	3 cut(s)	132, 425, 699
GsuI	CTGGAG	1 cut(s)	459
HapII	CCGG	2 cut(s)	122, 389
HgaI	GACGC	2 cut(s)	123, 272
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	7 cut(s)	49, 145, 293, 325, 493, 525, 727
HinfI	GANTC	4 cut(s)	110, 332, 434, 569
HpaII	CCGG	2 cut(s)	122, 389
HphI	GGTGA	4 cut(s)	26, 523, 559, 595
Hpy188I	TCNGA	2 cut(s)	166, 370
Hpy188III	TCNNGA	5 cut(s)	290, 296, 336, 438, 447
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	3 cut(s)	343, 655, 667
HpyCH4III	ACNGT	4 cut(s)	74, 505, 555, 634
HpyCH4V	TGCA	1 cut(s)	698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 698, 726
HpyF3I	CTNAG	2 cut(s)	209, 476
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	7 cut(s)	49, 145, 293, 325, 493, 525, 727
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	4 cut(s)	292, 318, 401, 443
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	9 cut(s)	19, 84, 135, 160, 321, 402, 423, 587, 600
Lsp1109I	GCAGC	3 cut(s)	143, 436, 710
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	4 cut(s)	294, 320, 403, 445
MboI	GATC	4 cut(s)	292, 318, 401, 443
MboII	GAAGA	9 cut(s)	74, 193, 418, 421, 424, 556, 628, 665, 668
MhlI	GDGCHC	2 cut(s)	69, 119
MluCI	AATT	2 cut(s)	306, 681
MslI	CAYNNNNRTG	1 cut(s)	545
MspI	CCGG	2 cut(s)	122, 389
MwoI	GCNNNNNNNGC	3 cut(s)	212, 698, 726
NdeII	GATC	4 cut(s)	292, 318, 401, 443
NlaIII	CATG	7 cut(s)	49, 145, 293, 325, 493, 525, 727
NlaIV	GGNNCC	1 cut(s)	222
NspI	RCATGY	2 cut(s)	49, 525
NspV	TTCGAA	2 cut(s)	375, 567
OliI	CACNNNNGTG	1 cut(s)	545
PagI	TCATGA	1 cut(s)	289
PciI	ACATGT	2 cut(s)	45, 521
PciSI	GCTCTTC	1 cut(s)	57
PfeI	GAWTC	4 cut(s)	110, 332, 434, 569
PkrI	GCNGC	3 cut(s)	133, 426, 700
PscI	ACATGT	2 cut(s)	45, 521
Psp124BI	GAGCTC	2 cut(s)	69, 119
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	2 cut(s)	220, 664
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	545
SacI	GAGCTC	2 cut(s)	69, 119
SapI	GCTCTTC	1 cut(s)	57
SatI	GCNGC	3 cut(s)	132, 425, 699
Sau3AI	GATC	4 cut(s)	292, 318, 401, 443
Sau96I	GGNCC	2 cut(s)	220, 664
SduI	GDGCHC	2 cut(s)	69, 119
SfuI	TTCGAA	2 cut(s)	375, 567
SinI	GGWCC	2 cut(s)	220, 664
SmiMI	CAYNNNNRTG	1 cut(s)	545
Sse9I	AATT	2 cut(s)	306, 681
SsiI	CCGC	2 cut(s)	314, 606
SstI	GAGCTC	2 cut(s)	69, 119
TaaI	ACNGT	4 cut(s)	74, 505, 555, 634
TaqI	TCGA	6 cut(s)	69, 113, 375, 404, 462, 567
TasI	AATT	2 cut(s)	306, 681
TfiI	GAWTC	4 cut(s)	110, 332, 434, 569
TscAI	CASTG	2 cut(s)	222, 510
TseI	GCWGC	3 cut(s)	131, 424, 698
TspDTI	ATGAA	5 cut(s)	33, 102, 278, 628, 666
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	2 cut(s)	222, 510
VpaK11BI	GGWCC	2 cut(s)	220, 664
XapI	RAATTY	1 cut(s)	306
XceI	RCATGY	2 cut(s)	49, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.