Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008454

Physical Location & Seq

Genomic Coordinates Forward (+)

15640367 .. 15644135

Gene Structure 3769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG091000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGACAACATTGGTGATGAATACAAGCATTACTGGGAAACCAACATGTTCCTCCAAACCGAAGAACTCGACAGTTGGGGATTGGATGAAGCGTTTTCTGGGTACTACGATTCTAGCTCGCCGGACGGAGCAGCGTCGTCCATGGCCTCCAAGAACATTGTTTCAGAGAGGAACAGGAGGAAGAAGCTCAATGAGAGGCTCTTTGCTCTTAGAGCAGTGGTCCCCAACATTAGCAAGATGGATAAGGCTTCTATAATCAAAGACGCCATTGACTACATCCAAGAGCTTCATGATCAAGAAAAAAGAATTCAAGCGGAGATCATGGATTTGGAATCTGGAAAATCAAAGAAGGGTGTTATTGGTAGTTCGGATTTCGAACAAGAGCTTCCGGTCTTGTTGAGATCGAAGAAGAAGAAAATCGAGCAGCTCTATGATTCTGGAGGATCAAGAGCTTCCTCCATCGAAGTCCTTGAACTTAGGGTTACATACATGGGGGAAAAGACAGTGGTGGTGAGCTTGACATGTAGTAAGAGAACAGACACAATGGTGAAACTGTGCGAGGTCTTTGAGTCCCTGAAGCTCAAAATCATTACAGCCAATATCACTGCTTTTTCTGGGAGGGTATTGAAAACAGTCTTCATTGAGGTAAGTTATGCCTATATACTCTTTTTCGTCACCAATTGGAGCAAGGTATTCTTAATCCTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

236

Amino Acids

26.89

Weight (kDa)

6.77

Isoelectric Point (pI)

55.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	53 - 97	4.6e-12	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	158 - 216	5.3e-21	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57150 AT5G57150 AT5G57150 AT5G57150 AT5G57150
fragaria_vesca	FvH4_4g07090 FvH4_4g07090 FvH4_4g07090
malus_domestica	MD13G1239700.v1.1 MD16G1247600.v1.1
prunus_persica	Prupe.1G074400_v2.0.a1 Prupe.1G074400_v2.0.a1
pyrus_communis	pycom16g20780
rosa_chinensis	RchiOBHm_Chr4g0399211
rosa_laevigata	RLG00000009286
rosa_multiflora	Rmu_sc0001556.1_g000007
rosa_roxburghii	Rroxscaffold_5G00344190
rosa_rugosa	Rorug04G0015400 Rorug04G0015500
rosa_samantha	Rh4AG093200 Rh4BG091000 Rh4CG101500
rosa_wichuraiana	Rw4G007670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	314
AclWI	GGATC	1 cut(s)	451
AcsI	RAATTY	1 cut(s)	306
AcuI	CTGAAG	1 cut(s)	596
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	1 cut(s)	104
AflIII	ACRYGT	2 cut(s)	45, 521
AgsI	TTSAA	3 cut(s)	311, 473, 628
AleI	CACNNNNGTG	1 cut(s)	545
AluBI	AGCT	8 cut(s)	117, 187, 286, 385, 427, 452, 516, 580
AluI	AGCT	8 cut(s)	117, 187, 286, 385, 427, 452, 516, 580
AlwI	GGATC	1 cut(s)	451
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	2 cut(s)	131, 424
ApoI	RAATTY	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	4 cut(s)	26, 523, 559, 667
AsuII	TTCGAA	1 cut(s)	375
AvaII	GGWCC	1 cut(s)	220
BbsI	GAAGAC	1 cut(s)	628
BbvI	GCAGC	2 cut(s)	143, 436
BccI	CCATC	2 cut(s)	232, 467
BclI	TGATCA	1 cut(s)	292
BfaI	CTAG	1 cut(s)	114
BisI	GCNGC	2 cut(s)	132, 425
BlsI	GCNGC	2 cut(s)	133, 426
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	222
BmrI	ACTGGG	1 cut(s)	43
BmuI	ACTGGG	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	628
BpmI	CTGGAG	1 cut(s)	459
Bpu14I	TTCGAA	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	388
Bse1I	ACTGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	2 cut(s)	91, 276
BseNI	ACTGG	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	143, 436
BshFI	GGCC	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	122, 389
BslFI	GGGAC	2 cut(s)	206, 556
BsmFI	GGGAC	2 cut(s)	206, 556
BsnI	GGCC	1 cut(s)	146
Bsp119I	TTCGAA	1 cut(s)	375
Bsp143I	GATC	4 cut(s)	292, 318, 401, 443
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	146
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	1 cut(s)	451
BspT104I	TTCGAA	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	4 cut(s)	292, 318, 401, 443
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	141
Bst4CI	ACNGT	4 cut(s)	74, 505, 555, 634
BstACI	GRCGYC	1 cut(s)	264
BstBI	TTCGAA	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	2 cut(s)	209, 476
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	91, 276
BstKTI	GATC	4 cut(s)	295, 321, 404, 446
BstMBI	GATC	4 cut(s)	292, 318, 401, 443
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNSI	RCATGY	2 cut(s)	49, 525
BstV1I	GCAGC	2 cut(s)	143, 436
BstV2I	GAAGAC	1 cut(s)	628
BsuRI	GGCC	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	91, 276
BtsI	GCAGTG	2 cut(s)	222, 603
BtsIMutI	CAGTG	3 cut(s)	222, 510, 603
Cac8I	GCNNGC	1 cut(s)	119
CciI	TCATGA	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	220
CseI	GACGC	2 cut(s)	123, 272
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	6 cut(s)	46, 142, 290, 322, 490, 522
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	209, 476
DpnI	GATC	4 cut(s)	294, 320, 403, 445
DpnII	GATC	4 cut(s)	292, 318, 401, 443
Eco130I	CCWWGG	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	596
EcoRI	GAATTC	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	6 cut(s)	49, 145, 293, 325, 493, 525
FalI	AAGNNNNNCTT	1 cut(s)	680
FaqI	GGGAC	2 cut(s)	206, 556
FatI	CATG	6 cut(s)	45, 141, 289, 321, 489, 521
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	132, 425
FokI	GGATG	2 cut(s)	98, 263
Fsp4HI	GCNGC	2 cut(s)	132, 425
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	2 cut(s)	132, 425
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	2 cut(s)	122, 389
HgaI	GACGC	2 cut(s)	123, 272
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	6 cut(s)	49, 145, 293, 325, 493, 525
HinfI	GANTC	4 cut(s)	110, 332, 434, 569
HpaII	CCGG	2 cut(s)	122, 389
HphI	GGTGA	4 cut(s)	26, 523, 559, 667
Hpy188I	TCNGA	2 cut(s)	166, 370
Hpy188III	TCNNGA	5 cut(s)	290, 296, 336, 438, 447
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	4 cut(s)	74, 505, 555, 634
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	2 cut(s)	209, 476
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	6 cut(s)	49, 145, 293, 325, 493, 525
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	4 cut(s)	292, 318, 401, 443
LmnI	GCTCC	2 cut(s)	128, 684
LpnPI	CCDG	9 cut(s)	19, 84, 135, 160, 321, 402, 423, 587, 600
Lsp1109I	GCAGC	2 cut(s)	143, 436
MaeI	CTAG	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	481, 673
MalI	GATC	4 cut(s)	294, 320, 403, 445
MboI	GATC	4 cut(s)	292, 318, 401, 443
MboII	GAAGA	6 cut(s)	74, 193, 418, 421, 424, 628
MfeI	CAATTG	1 cut(s)	679
MluCI	AATT	2 cut(s)	306, 679
MlyI	GAGTC	1 cut(s)	578
MseI	TTAA	2 cut(s)	698, 705
MslI	CAYNNNNRTG	1 cut(s)	545
MspI	CCGG	2 cut(s)	122, 389
MunI	CAATTG	1 cut(s)	679
MwoI	GCNNNNNNNGC	1 cut(s)	212
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	4 cut(s)	292, 318, 401, 443
NlaIII	CATG	6 cut(s)	49, 145, 293, 325, 493, 525
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	673
NspI	RCATGY	2 cut(s)	49, 525
NspV	TTCGAA	1 cut(s)	375
OliI	CACNNNNGTG	1 cut(s)	545
PagI	TCATGA	1 cut(s)	289
PciI	ACATGT	2 cut(s)	45, 521
PfeI	GAWTC	3 cut(s)	110, 332, 434
PkrI	GCNGC	2 cut(s)	133, 426
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
PscI	ACATGT	2 cut(s)	45, 521
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	220
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	545
SaqAI	TTAA	2 cut(s)	698, 705
SatI	GCNGC	2 cut(s)	132, 425
Sau3AI	GATC	4 cut(s)	292, 318, 401, 443
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	578
SfuI	TTCGAA	1 cut(s)	375
SinI	GGWCC	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	545
Sse9I	AATT	2 cut(s)	306, 679
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	4 cut(s)	74, 505, 555, 634
TaqI	TCGA	5 cut(s)	69, 375, 404, 420, 462
TasI	AATT	2 cut(s)	306, 679
TfiI	GAWTC	3 cut(s)	110, 332, 434
Tru1I	TTAA	2 cut(s)	698, 705
Tru9I	TTAA	2 cut(s)	698, 705
TscAI	CASTG	3 cut(s)	222, 510, 610
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	2 cut(s)	131, 424
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	4 cut(s)	33, 102, 278, 628
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	3 cut(s)	222, 510, 610
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	1 cut(s)	306
XceI	RCATGY	2 cut(s)	49, 525
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.