Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008454

Physical Location & Seq

Genomic Coordinates Forward (+)

6494376 .. 6498841

Gene Structure 4466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07090.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGACAACATTGGTGATGAGTACCAGCATTACTGGGAAACCAACATGTTCCTCCAAACCGAAGAGCTCGACAGTTGGAAATTGGGGGAGGAGGCGTTTTCTGGGTACTACGATTCGAGCTCGCCGGACGGAGCAGCGTCGTCCATGGCTTCCAAGAACATTGTTTCAGAGAGGAACAGAAGGAAGAAGCTCAATGAGAGGCTCTTTGCTCTTAGAGCAGTGGTCCCCAACATTAGCAAGATGGATAAGGCTTCTATAATCAAAGACGCCATTGACTACATCCAAGAGCTTCATGATCAAGAAAGAAGAATTCAAGCGGAGATCATGGATTTGGAATCTGGAAAATCAAAGAAAAGTGTCATGGGAAGTTCCGATTTCGAACAAGAGCTTCCGGTCTTGTTGAGATCGAAGAAGAAGAAACTCGAGCTGTATGATTCTGGAGGATCAAGAAGTTCCTCCATTGAAATCCTTGAACTTAGGGTTACATACATGGGGGAGAAGACAGTGGTGGTGAGCTTGACATGTAGTAAGAGAACAGACACAATGGTGAAACTGTGCGAGGTCTTTGAATCTCTCAAGCTCAAAATCATTACTGCCAATATCACCGCCTTTGCTGGGAGGGTACTCAAAACAGTCTTCATTGAGGCAGATGAAGAAGAAAAGGATCATTTGAAGGTAAAAATTCAAACAGCTATTGCAGCTCTGAACGACCCCCAAAGCCCCATGAGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

245

Amino Acids

27.63

Weight (kDa)

5.46

Isoelectric Point (pI)

64.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	54 - 104	1e-10	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	164 - 239	1.7e-25	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57150 AT5G57150 AT5G57150 AT5G57150 AT5G57150
fragaria_vesca	FvH4_4g07090 FvH4_4g07090 FvH4_4g07090
malus_domestica	MD13G1239700.v1.1 MD16G1247600.v1.1
prunus_persica	Prupe.1G074400_v2.0.a1 Prupe.1G074400_v2.0.a1
pyrus_communis	pycom16g20780
rosa_chinensis	RchiOBHm_Chr4g0399211
rosa_laevigata	RLG00000009286
rosa_multiflora	Rmu_sc0001556.1_g000007
rosa_roxburghii	Rroxscaffold_5G00344190
rosa_rugosa	Rorug04G0015400 Rorug04G0015500
rosa_samantha	Rh4AG093200 Rh4BG091000 Rh4CG101500
rosa_wichuraiana	Rw4G007670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	317, 606
AclWI	GGATC	2 cut(s)	451, 672
AcsI	RAATTY	2 cut(s)	309, 681
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	3 cut(s)	23, 107, 624
AfiI	CCNNNNNNNGG	1 cut(s)	615
AflIII	ACRYGT	2 cut(s)	45, 521
AgsI	TTSAA	6 cut(s)	314, 464, 473, 569, 673, 686
AleI	CACNNNNGTG	1 cut(s)	545
Alw21I	GWGCWC	2 cut(s)	69, 122
AlwI	GGATC	2 cut(s)	451, 672
Ama87I	CYCGRG	1 cut(s)	422
ApeKI	GCWGC	2 cut(s)	134, 698
ApoI	RAATTY	2 cut(s)	309, 681
AspS9I	GGNCC	1 cut(s)	223
AsuHPI	GGTGA	4 cut(s)	26, 523, 559, 595
AsuII	TTCGAA	1 cut(s)	378
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	223
BanII	GRGCYC	2 cut(s)	69, 122
BbsI	GAAGAC	2 cut(s)	506, 628
Bbv12I	GWGCWC	2 cut(s)	69, 122
BbvI	GCAGC	2 cut(s)	146, 710
BccI	CCATC	1 cut(s)	235
BclI	TGATCA	1 cut(s)	295
BisI	GCNGC	2 cut(s)	135, 699
BlsI	GCNGC	2 cut(s)	136, 700
Bme18I	GGWCC	1 cut(s)	223
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	225
BmrI	ACTGGG	1 cut(s)	43
BmuI	ACTGGG	1 cut(s)	43
BpiI	GAAGAC	2 cut(s)	506, 628
BpmI	CTGGAG	1 cut(s)	459
Bpu14I	TTCGAA	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	560
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	391
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	615
Bse1I	ACTGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	615
BseNI	ACTGG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	146, 710
BseYI	CCCAGC	1 cut(s)	614
BsiHKAI	GWGCWC	2 cut(s)	69, 122
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	2 cut(s)	125, 392
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	615
BsmFI	GGGAC	1 cut(s)	209
BsoBI	CYCGRG	1 cut(s)	422
Bsp119I	TTCGAA	1 cut(s)	378
Bsp1286I	GDGCHC	2 cut(s)	69, 122
Bsp143I	GATC	5 cut(s)	295, 321, 404, 443, 664
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	2 cut(s)	317, 606
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	2 cut(s)	451, 672
BspQI	GCTCTTC	1 cut(s)	57
BspT104I	TTCGAA	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	5 cut(s)	295, 321, 404, 443, 664
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	4 cut(s)	74, 505, 555, 634
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	267
BstBI	TTCGAA	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	2 cut(s)	212, 476
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	279
BstKTI	GATC	5 cut(s)	298, 324, 407, 446, 667
BstMBI	GATC	5 cut(s)	295, 321, 404, 443, 664
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 698, 726
BstNSI	RCATGY	2 cut(s)	49, 525
BstV1I	GCAGC	2 cut(s)	146, 710
BstV2I	GAAGAC	2 cut(s)	506, 628
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	279
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	225, 510
Cac8I	GCNNGC	1 cut(s)	122
CciI	TCATGA	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	223
CseI	GACGC	2 cut(s)	126, 275
Csp6I	GTAC	3 cut(s)	22, 106, 623
CviAII	CATG	8 cut(s)	46, 145, 293, 325, 361, 490, 522, 724
CviQI	GTAC	3 cut(s)	22, 106, 623
DdeI	CTNAG	2 cut(s)	212, 476
DpnI	GATC	5 cut(s)	297, 323, 406, 445, 666
DpnII	GATC	5 cut(s)	295, 321, 404, 443, 664
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Ecl136II	GAGCTC	2 cut(s)	67, 120
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	2 cut(s)	69, 122
Eco47I	GGWCC	1 cut(s)	223
Eco53kI	GAGCTC	2 cut(s)	67, 120
Eco88I	CYCGRG	1 cut(s)	422
EcoICRI	GAGCTC	2 cut(s)	67, 120
EcoRI	GAATTC	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	2 cut(s)	69, 122
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	8 cut(s)	49, 148, 296, 328, 364, 493, 525, 727
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	8 cut(s)	45, 144, 292, 324, 360, 489, 521, 723
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	135, 699
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	2 cut(s)	69, 122
Fsp4HI	GCNGC	2 cut(s)	135, 699
GluI	GCNGC	2 cut(s)	135, 699
GsaI	CCCAGC	1 cut(s)	618
GsuI	CTGGAG	1 cut(s)	459
HapII	CCGG	2 cut(s)	125, 392
HgaI	GACGC	2 cut(s)	126, 275
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	8 cut(s)	49, 148, 296, 328, 364, 493, 525, 727
HinfI	GANTC	4 cut(s)	113, 335, 434, 569
HpaII	CCGG	2 cut(s)	125, 392
HphI	GGTGA	4 cut(s)	26, 523, 559, 595
Hpy188I	TCNGA	3 cut(s)	169, 373, 705
Hpy188III	TCNNGA	5 cut(s)	293, 299, 339, 438, 447
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	2 cut(s)	174, 667
HpyCH4III	ACNGT	4 cut(s)	74, 505, 555, 634
HpyCH4V	TGCA	1 cut(s)	698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 698, 726
HpyF3I	CTNAG	2 cut(s)	212, 476
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	8 cut(s)	49, 148, 296, 328, 364, 493, 525, 727
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	5 cut(s)	295, 321, 404, 443, 664
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	8 cut(s)	19, 38, 87, 138, 324, 405, 423, 600
Lsp1109I	GCAGC	2 cut(s)	146, 710
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	5 cut(s)	297, 323, 406, 445, 666
MboI	GATC	5 cut(s)	295, 321, 404, 443, 664
MhlI	GDGCHC	2 cut(s)	69, 122
MluCI	AATT	3 cut(s)	80, 309, 681
MmeI	TCCRAC	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	545
MspI	CCGG	2 cut(s)	125, 392
MwoI	GCNNNNNNNGC	3 cut(s)	215, 698, 726
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	5 cut(s)	295, 321, 404, 443, 664
NlaIII	CATG	8 cut(s)	49, 148, 296, 328, 364, 493, 525, 727
NlaIV	GGNNCC	1 cut(s)	225
NspI	RCATGY	2 cut(s)	49, 525
NspV	TTCGAA	1 cut(s)	378
OliI	CACNNNNGTG	1 cut(s)	545
PaeR7I	CTCGAG	1 cut(s)	422
PagI	TCATGA	1 cut(s)	292
PciI	ACATGT	2 cut(s)	45, 521
PciSI	GCTCTTC	1 cut(s)	57
PfeI	GAWTC	4 cut(s)	113, 335, 434, 569
PkrI	GCNGC	2 cut(s)	136, 700
PscI	ACATGT	2 cut(s)	45, 521
Psp124BI	GAGCTC	2 cut(s)	69, 122
PspFI	CCCAGC	1 cut(s)	614
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	223
PspXI	VCTCGAGB	1 cut(s)	422
RsaI	GTAC	3 cut(s)	23, 107, 624
RsaNI	GTAC	3 cut(s)	22, 106, 623
RseI	CAYNNNNRTG	1 cut(s)	545
SacI	GAGCTC	2 cut(s)	69, 122
SapI	GCTCTTC	1 cut(s)	57
SatI	GCNGC	2 cut(s)	135, 699
Sau3AI	GATC	5 cut(s)	295, 321, 404, 443, 664
Sau96I	GGNCC	1 cut(s)	223
SduI	GDGCHC	2 cut(s)	69, 122
Sfr274I	CTCGAG	1 cut(s)	422
SfuI	TTCGAA	1 cut(s)	378
SinI	GGWCC	1 cut(s)	223
SlaI	CTCGAG	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	545
SmlI	CTYRAG	2 cut(s)	422, 575
SmoI	CTYRAG	2 cut(s)	422, 575
Sse9I	AATT	3 cut(s)	80, 309, 681
SsiI	CCGC	2 cut(s)	317, 606
SstI	GAGCTC	2 cut(s)	69, 122
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	4 cut(s)	74, 505, 555, 634
TaqI	TCGA	5 cut(s)	69, 116, 378, 407, 423
TasI	AATT	3 cut(s)	80, 309, 681
TfiI	GAWTC	4 cut(s)	113, 335, 434, 569
TscAI	CASTG	2 cut(s)	225, 510
TseI	GCWGC	2 cut(s)	134, 698
TspDTI	ATGAA	3 cut(s)	281, 628, 666
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	2 cut(s)	225, 510
VpaK11BI	GGWCC	1 cut(s)	223
XapI	RAATTY	2 cut(s)	309, 681
XceI	RCATGY	2 cut(s)	49, 525
XhoI	CTCGAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.