Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008454

Physical Location & Seq

Genomic Coordinates Forward (+)

27662311 .. 27666947

Gene Structure 4637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1247600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGACAACATTGGAGATGAGTACAAACATTACTGGGAAACCAATATGTTCCTACAAACCGAAGAGCTTGACAGTTGGGATTTGGATGAGGCGTTTTCTGGGTACTACGATTCGAGCTCGCCGGACGGAGCAGCTTCCTTCATGGCCTCCTCCAAGAATGTTGTGTCTGAGAGGAATAGGAGGAAAAAGCTCAATGAAAGGCTGTTTGCACTTAGAGCAGTGGTCCCCAACATTAGCAAGATGGACAAGGCTTCTGTAATCAAAGACGCCATTGACTATATCCAAGAGCTGCATGAACAAGAAAGAAGAATTCAAACAGAGATAGTTGAGCTAATTGAATCTGGAAAATCAAATAAAAAGTCGGGTTCCGATTTCGAACAAGACCTACCGGTCCTGTTGAGATCAAAGAAGAAGAAAATTGAGCAGCTCTACGACTGTGGAGGATCAAGAATTTCCACAATCGAAATCCTCGAGCTTAGGGTTACATACATGGGTGAAAAGACGTTGGTGGTGAGCTTGACATGCAGTAAAAGAACGGACACAATGGTAAAATTGTGCGAGGTGTTCGAATCTTTGAAGCTCAAAATCATTACGGCGAATATTACTGCTTTCTCCGGAAGGGTCTTGAAGACGGTTTTCGTTGAGGCAGACGAAGAAGAAAAAGATCATTTGAAGATAAAAATTGAAACAGCCATTACAGCTTTGAATGATCCACAAAGCCCCATGAGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

245

Amino Acids

27.83

Weight (kDa)

5.25

Isoelectric Point (pI)

64.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	54 - 98	1.5e-11	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	158 - 232	2.4e-25	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57150 AT5G57150 AT5G57150 AT5G57150 AT5G57150
fragaria_vesca	FvH4_4g07090 FvH4_4g07090 FvH4_4g07090
malus_domestica	MD13G1239700.v1.1 MD16G1247600.v1.1
prunus_persica	Prupe.1G074400_v2.0.a1 Prupe.1G074400_v2.0.a1
pyrus_communis	pycom16g20780
rosa_chinensis	RchiOBHm_Chr4g0399211
rosa_laevigata	RLG00000009286
rosa_multiflora	Rmu_sc0001556.1_g000007
rosa_roxburghii	Rroxscaffold_5G00344190
rosa_rugosa	Rorug04G0015400 Rorug04G0015500
rosa_samantha	Rh4AG093200 Rh4BG091000 Rh4CG101500
rosa_wichuraiana	Rw4G007670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	389
AccIII	TCCGGA	1 cut(s)	614
AclWI	GGATC	2 cut(s)	451, 704
AcsI	RAATTY	2 cut(s)	309, 450
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	2 cut(s)	23, 104
AgeI	ACCGGT	1 cut(s)	388
AgsI	TTSAA	7 cut(s)	314, 338, 577, 628, 673, 686, 706
Alw21I	GWGCWC	1 cut(s)	119
AlwI	GGATC	2 cut(s)	451, 704
Ama87I	CYCGRG	1 cut(s)	470
Aor13HI	TCCGGA	1 cut(s)	614
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	3 cut(s)	131, 289, 424
ApoI	RAATTY	2 cut(s)	309, 450
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
AsiGI	ACCGGT	1 cut(s)	388
AspS9I	GGNCC	2 cut(s)	223, 391
AsuHPI	GGTGA	2 cut(s)	506, 523
AsuII	TTCGAA	2 cut(s)	375, 567
AvaI	CYCGRG	1 cut(s)	470
AvaII	GGWCC	2 cut(s)	223, 391
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	635
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	3 cut(s)	143, 276, 436
BccI	CCATC	1 cut(s)	235
BceAI	ACGGC	1 cut(s)	609
BisI	GCNGC	3 cut(s)	132, 290, 425
BlsI	GCNGC	3 cut(s)	133, 291, 426
Bme18I	GGWCC	2 cut(s)	223, 391
BmeT110I	CYCGRG	1 cut(s)	470
BmgT120I	GGNCC	2 cut(s)	223, 391
BmiI	GGNNCC	2 cut(s)	225, 367
BmrI	ACTGGG	1 cut(s)	43
BmuI	ACTGGG	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	635
Bpu10I	CCTNAGC	1 cut(s)	476
Bpu14I	TTCGAA	2 cut(s)	375, 567
BsaHI	GRCGYC	1 cut(s)	267
BsaWI	WCCGGW	2 cut(s)	388, 614
Bse118I	RCCGGY	1 cut(s)	388
Bse1I	ACTGG	1 cut(s)	38
BseAI	TCCGGA	1 cut(s)	614
BseGI	GGATG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	3 cut(s)	143, 276, 436
BshFI	GGCC	1 cut(s)	146
BshTI	ACCGGT	1 cut(s)	388
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	470
BsiSI	CCGG	3 cut(s)	122, 389, 615
BslFI	GGGAC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	470
Bsp119I	TTCGAA	2 cut(s)	375, 567
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	614
Bsp143I	GATC	4 cut(s)	401, 443, 664, 709
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	160
BspEI	TCCGGA	1 cut(s)	614
BspLI	GGNNCC	2 cut(s)	225, 367
BspPI	GGATC	2 cut(s)	451, 704
BspQI	GCTCTTC	1 cut(s)	57
BspT104I	TTCGAA	2 cut(s)	375, 567
BsrFI	RCCGGY	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	388
BssMI	GATC	4 cut(s)	401, 443, 664, 709
BssNI	GRCGYC	1 cut(s)	267
Bst4CI	ACNGT	3 cut(s)	74, 437, 634
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	267
BstBI	TTCGAA	2 cut(s)	375, 567
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	3 cut(s)	168, 212, 476
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	4 cut(s)	404, 446, 667, 712
BstMBI	GATC	4 cut(s)	401, 443, 664, 709
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 522, 698, 726
BstNSI	RCATGY	1 cut(s)	525
BstV1I	GCAGC	3 cut(s)	143, 276, 436
BstV2I	GAAGAC	1 cut(s)	635
BsuRI	GGCC	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	119
Cfr10I	RCCGGY	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	223, 391
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	22, 103
CspAI	ACCGGT	1 cut(s)	388
CviAII	CATG	5 cut(s)	142, 293, 490, 522, 724
CviQI	GTAC	2 cut(s)	22, 103
DdeI	CTNAG	3 cut(s)	168, 212, 476
DpnI	GATC	4 cut(s)	403, 445, 666, 711
DpnII	GATC	4 cut(s)	401, 443, 664, 709
DrdI	GACNNNNNNGTC	1 cut(s)	389
DseDI	GACNNNNNNGTC	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	2 cut(s)	223, 391
Eco53kI	GAGCTC	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	470
EcoICRI	GAGCTC	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	5 cut(s)	145, 296, 493, 525, 727
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	5 cut(s)	141, 292, 489, 521, 723
FauNDI	CATATG	1 cut(s)	731
Fnu4HI	GCNGC	3 cut(s)	132, 290, 425
FokI	GGATG	1 cut(s)	98
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	132, 290, 425
GluI	GCNGC	3 cut(s)	132, 290, 425
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	3 cut(s)	122, 389, 615
HgaI	GACGC	1 cut(s)	275
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	5 cut(s)	145, 296, 493, 525, 727
HinfI	GANTC	3 cut(s)	110, 338, 569
HpaII	CCGG	3 cut(s)	122, 389, 615
HphI	GGTGA	2 cut(s)	506, 523
Hpy188I	TCNGA	2 cut(s)	169, 370
Hpy188III	TCNNGA	4 cut(s)	342, 447, 615, 625
HpyAV	CCTTC	2 cut(s)	148, 612
HpyCH4III	ACNGT	3 cut(s)	74, 437, 634
HpyCH4IV	ACGT	1 cut(s)	503
HpyCH4V	TGCA	3 cut(s)	209, 292, 525
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 522, 698, 726
HpyF3I	CTNAG	3 cut(s)	168, 212, 476
HpySE526I	ACGT	1 cut(s)	503
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	5 cut(s)	145, 296, 493, 525, 727
Kpn2I	TCCGGA	1 cut(s)	614
Kzo9I	GATC	4 cut(s)	401, 443, 664, 709
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	7 cut(s)	19, 84, 135, 327, 402, 407, 628
Lsp1109I	GCAGC	3 cut(s)	143, 276, 436
MaeII	ACGT	1 cut(s)	503
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	4 cut(s)	403, 445, 666, 711
MboI	GATC	4 cut(s)	401, 443, 664, 709
MboII	GAAGA	8 cut(s)	74, 318, 421, 424, 640, 665, 668, 685
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	6 cut(s)	309, 333, 417, 450, 551, 681
MnlI	CCTC	9 cut(s)	82, 157, 160, 165, 174, 434, 479, 553, 637
MroI	TCCGGA	1 cut(s)	614
MspI	CCGG	3 cut(s)	122, 389, 615
MwoI	GCNNNNNNNGC	4 cut(s)	215, 522, 698, 726
NdeI	CATATG	1 cut(s)	731
NdeII	GATC	4 cut(s)	401, 443, 664, 709
NlaIII	CATG	5 cut(s)	145, 296, 493, 525, 727
NlaIV	GGNNCC	2 cut(s)	225, 367
NspI	RCATGY	1 cut(s)	525
NspV	TTCGAA	2 cut(s)	375, 567
PaeR7I	CTCGAG	1 cut(s)	470
PciSI	GCTCTTC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PfeI	GAWTC	3 cut(s)	110, 338, 569
PinAI	ACCGGT	1 cut(s)	388
PkrI	GCNGC	3 cut(s)	133, 291, 426
Psp124BI	GAGCTC	1 cut(s)	119
PspN4I	GGNNCC	2 cut(s)	225, 367
PspPI	GGNCC	2 cut(s)	223, 391
PspXI	VCTCGAGB	1 cut(s)	470
PsrI	GAACNNNNNNTAC	2 cut(s)	369, 401
RsaI	GTAC	2 cut(s)	23, 104
RsaNI	GTAC	2 cut(s)	22, 103
SacI	GAGCTC	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	57
SatI	GCNGC	3 cut(s)	132, 290, 425
Sau3AI	GATC	4 cut(s)	401, 443, 664, 709
Sau96I	GGNCC	2 cut(s)	223, 391
SduI	GDGCHC	1 cut(s)	119
Sfr274I	CTCGAG	1 cut(s)	470
SfuI	TTCGAA	2 cut(s)	375, 567
SinI	GGWCC	2 cut(s)	223, 391
SlaI	CTCGAG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	6 cut(s)	309, 333, 417, 450, 551, 681
SspI	AATATT	1 cut(s)	601
SstI	GAGCTC	1 cut(s)	119
TaaI	ACNGT	3 cut(s)	74, 437, 634
TaiI	ACGT	1 cut(s)	506
TaqI	TCGA	5 cut(s)	113, 375, 462, 471, 567
TasI	AATT	6 cut(s)	309, 333, 417, 450, 551, 681
TatI	WGTACW	1 cut(s)	21
TfiI	GAWTC	3 cut(s)	110, 338, 569
TscAI	CASTG	1 cut(s)	225
TseI	GCWGC	3 cut(s)	131, 289, 424
TspDTI	ATGAA	3 cut(s)	130, 210, 309
TspGWI	ACGGA	2 cut(s)	141, 551
TspRI	CASTG	1 cut(s)	225
VpaK11BI	GGWCC	2 cut(s)	223, 391
XapI	RAATTY	2 cut(s)	309, 450
XceI	RCATGY	1 cut(s)	525
XhoI	CTCGAG	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.