AT5G58390

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012787
Physical Location & Seq
Reverse (-)
23599470 .. 23601404
1935 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58390.1

Sequence Viewer

Length: 951 bp
ATGTTAAAGGTGGTGTTGTTGATGATGATAATGATGTTGGCGTCACAGTCCGAGGCTCAGCTGAACCGTGACTTTTACAAGGAAAGCTGTCCATCATTGTTCCTTGTCGTGAGACGAGTCGTGAAACGGGCCGTGGCCAGAGAGCCTCGCATGGGTGCTTCTCTCCTTCGTTTGTTCTTCCATGATTGTTTTGTCAATGGGTGTGACGGATCCTTACTGTTGGATGACACACCGTCTTTTTTGGGAGAGAAAACCTCAGGACCCAGCAATAACTCTGTGAGGGGGTTCGAAGTGATCGACAAAATCAAGTTTAAGGTTGAGAAAATGTGCCCGGGCATCGTCTCATGCGCAGACATTCTAGCCATCACTGCTCGGGACTCCGTTCTCCTCCTAGGTGGACCGGGGTGGAGCGTGAAACTTGGAAGAAGAGACTCTACGACGGCGAACTTCGCGGCCGCGAACTCCGGAGTCATCCCTCCTCCGATCACTACCCTTAGCAACCTCATAAACCGTTTCAAAGCACAAGGTTTGTCCACACGTGACATGGTCGCCCTCTCTGGTGCTCACACCATTGGACGAGCCCAATGTGTTACATTCAGAAACCGAATCTACAACGCAAGCAATATCGACACCTCTTTCGCCATCTCTAAACGGAGGAACTGTCCTGCCACCAGTGGCTCCGGAGACAACAAGAAAGCCAATCTTGACGTCCGCTCTCCCGATAGGTTCGACCACGGCTTCTACAAGCAACTTCTGAGCAAAAAAGGTTTGCTTACGTCAGACCAAGTCCTCTTTAATAATGGTCCTACCGACTCGCTCGTCATAGCTTACAGCCACAATCTCAATGCCTTCTACCGCGACTTTGCAAGGGCAATGATTAAGATGGGAGACATCAGCCCCCTCACCGGATCCAATGGTCAGATCCGCCAAAACTGTCGGAGGCCCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

316

Amino Acids

34.71

Weight (kDa)

9.83

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 37 - 279 1.2e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012787)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58390 AT5G58400
fragaria_vesca FvH4_3g40180
malus_domestica MD03G1059200.v1.1 MD11G1061400.v1.1
prunus_persica Prupe.6G044000_v2.0.a1 Prupe.6G044300_v2.0.a1
pyrus_communis pycom03g04760 pycom11g05100
rosa_chinensis RchiOBHm_Chr5g0072371
rosa_laevigata RLG00000036295
rosa_multiflora Rmu_sc0000737.1_g000014
rosa_roxburghii Rroxscaffold_1G00008850
rosa_rugosa Rorug05G0417600
rosa_samantha Rh5AG474200 Rh5CG518300 Rh5DG506400
rosa_wichuraiana Rw5G044030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 818
AatII GACGTC 1 cut(s) 711
Acc16I TGCGCA 1 cut(s) 349
AccBSI CCGCTC 1 cut(s) 714
AccII CGCG 3 cut(s) 452, 458, 858
AccIII TCCGGA 2 cut(s) 464, 680
AciI CCGC 5 cut(s) 452, 456, 712, 856, 925
AclWI GGATC 5 cut(s) 204, 217, 903, 916, 916
AcoI YGGCCR 2 cut(s) 135, 453
AcvI CACGTG 1 cut(s) 539
AcyI GRCGYC 2 cut(s) 41, 708
AfiI CCNNNNNNNGG 2 cut(s) 152, 905
AflIII ACRYGT 1 cut(s) 536
AgsI TTSAA 1 cut(s) 517
AhdI GACNNNNNGTC 1 cut(s) 232
AluBI AGCT 3 cut(s) 61, 87, 827
AluI AGCT 3 cut(s) 61, 87, 827
Alw21I GWGCWC 1 cut(s) 565
Alw26I GTCTC 5 cut(s) 106, 346, 423, 678, 882
AlwI GGATC 5 cut(s) 204, 217, 903, 916, 916
Ama87I CYCGRG 2 cut(s) 331, 372
Aor13HI TCCGGA 2 cut(s) 464, 680
AoxI GGCC 4 cut(s) 129, 135, 453, 941
ArsI GACNNNNNNTTYG 2 cut(s) 620, 652
AspA2I CCTAGG 1 cut(s) 391
AspLEI GCGC 1 cut(s) 350
AspS9I GGNCC 5 cut(s) 129, 260, 398, 803, 942
AsuC2I CCSGG 3 cut(s) 332, 333, 402
AsuHPI GGTGA 1 cut(s) 895
AsuII TTCGAA 1 cut(s) 288
AvaI CYCGRG 2 cut(s) 331, 372
AvaII GGWCC 3 cut(s) 260, 398, 803
AvrII CCTAGG 1 cut(s) 391
AxyI CCTNAGG 1 cut(s) 256
BaeGI GKGCMC 1 cut(s) 332
BalI TGGCCA 1 cut(s) 137
BamHI GGATCC 2 cut(s) 209, 908
BanII GRGCYC 1 cut(s) 583
BarI GAAGNNNNNNTAC 2 cut(s) 418, 450
BbrPI CACGTG 1 cut(s) 539
Bbv12I GWGCWC 1 cut(s) 565
BccI CCATC 4 cut(s) 100, 371, 650, 877
BceAI ACGGC 3 cut(s) 116, 456, 751
BcnI CCSGG 3 cut(s) 332, 333, 402
BcoDI GTCTC 5 cut(s) 106, 346, 423, 678, 882
BfaI CTAG 2 cut(s) 359, 392
BisI GCNGC 2 cut(s) 453, 456
BlnI CCTAGG 1 cut(s) 391
BlpI GCTNAGC 1 cut(s) 57
BlsI GCNGC 2 cut(s) 454, 457
Bme1390I CCNGG 3 cut(s) 332, 333, 402
Bme18I GGWCC 3 cut(s) 260, 398, 803
BmeRI GACNNNNNGTC 1 cut(s) 232
BmeT110I CYCGRG 2 cut(s) 331, 372
BmgT120I GGNCC 5 cut(s) 129, 260, 398, 803, 942
BmiI GGNNCC 4 cut(s) 211, 262, 679, 910
BmrFI CCNGG 3 cut(s) 332, 333, 402
BmsI GCATC 1 cut(s) 345
BplI GAGNNNNNCTC 2 cut(s) 239, 271
Bpu10I CCTNAGC 1 cut(s) 494
Bpu1102I GCTNAGC 1 cut(s) 57
Bpu14I TTCGAA 1 cut(s) 288
BpuMI CCSGG 3 cut(s) 332, 333, 402
BsaAI YACGTR 1 cut(s) 539
BsaHI GRCGYC 2 cut(s) 41, 708
BsaJI CCNNGG 6 cut(s) 51, 132, 331, 391, 401, 733
BsaWI WCCGGW 3 cut(s) 464, 680, 905
BsaXI ACNNNNNCTCC 2 cut(s) 646, 676
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 905
Bse1I ACTGG 1 cut(s) 672
Bse21I CCTNAGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 879
BseAI TCCGGA 2 cut(s) 464, 680
BseDI CCNNGG 6 cut(s) 51, 132, 331, 391, 401, 733
BseGI GGATG 2 cut(s) 229, 471
BseLI CCNNNNNNNGG 2 cut(s) 152, 905
BseMI GCAATG 1 cut(s) 879
BseMII CTCAG 3 cut(s) 71, 270, 746
BseNI ACTGG 1 cut(s) 672
BseRI GAGGAG 2 cut(s) 377, 468
BseSI GKGCMC 1 cut(s) 332
BseX3I CGGCCG 1 cut(s) 453
BseYI CCCAGC 1 cut(s) 263
Bsh1236I CGCG 3 cut(s) 452, 458, 858
Bsh1285I CGRYCG 1 cut(s) 456
BshFI GGCC 4 cut(s) 131, 137, 455, 943
BsiEI CGRYCG 1 cut(s) 456
BsiHKAI GWGCWC 1 cut(s) 565
BsiHKCI CYCGRG 2 cut(s) 331, 372
BsiSI CCGG 5 cut(s) 332, 401, 465, 681, 906
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 2 cut(s) 152, 905
BsmAI GTCTC 5 cut(s) 106, 346, 423, 678, 882
BsmBI CGTCTC 2 cut(s) 106, 346
BsmFI GGGAC 1 cut(s) 389
BsnI GGCC 4 cut(s) 131, 137, 455, 943
BsoBI CYCGRG 2 cut(s) 331, 372
Bsp119I TTCGAA 1 cut(s) 288
Bsp1286I GDGCHC 3 cut(s) 332, 565, 583
Bsp13I TCCGGA 2 cut(s) 464, 680
Bsp143I GATC 5 cut(s) 209, 294, 483, 908, 921
Bsp1720I GCTNAGC 1 cut(s) 57
BspACI CCGC 5 cut(s) 452, 456, 712, 856, 925
BspANI GGCC 4 cut(s) 131, 137, 455, 943
BspCNI CTCAG 3 cut(s) 70, 269, 747
BspEI TCCGGA 2 cut(s) 464, 680
BspFNI CGCG 3 cut(s) 452, 458, 858
BspLI GGNNCC 4 cut(s) 211, 262, 679, 910
BspPI GGATC 5 cut(s) 204, 217, 903, 916, 916
BspT104I TTCGAA 1 cut(s) 288
BsrBI CCGCTC 1 cut(s) 714
BsrDI GCAATG 1 cut(s) 879
BsrI ACTGG 1 cut(s) 672
BssECI CCNNGG 6 cut(s) 51, 132, 331, 391, 401, 733
BssMI GATC 5 cut(s) 209, 294, 483, 908, 921
BssNI GRCGYC 2 cut(s) 41, 708
BssT1I CCWWGG 1 cut(s) 391
Bst4CI ACNGT 7 cut(s) 48, 68, 219, 234, 512, 662, 935
Bst6I CTCTTC 1 cut(s) 421
BstACI GRCGYC 2 cut(s) 41, 708
BstBAI YACGTR 1 cut(s) 539
BstBI TTCGAA 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 619
BstDEI CTNAG 4 cut(s) 57, 256, 494, 755
BstDSI CCRYGG 2 cut(s) 132, 733
BstF5I GGATG 2 cut(s) 229, 471
BstFNI CGCG 3 cut(s) 452, 458, 858
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 5 cut(s) 212, 297, 486, 911, 924
BstMAI GTCTC 5 cut(s) 106, 346, 423, 678, 882
BstMBI GATC 5 cut(s) 209, 294, 483, 908, 921
BstMCI CGRYCG 1 cut(s) 456
BstMWI GCNNNNNNNGC 2 cut(s) 368, 449
BstSCI CCNGG 3 cut(s) 330, 331, 400
BstSLI GKGCMC 1 cut(s) 332
BstUI CGCG 3 cut(s) 452, 458, 858
BstX2I RGATCY 3 cut(s) 209, 908, 921
BstYI RGATCY 3 cut(s) 209, 908, 921
BstZI CGGCCG 1 cut(s) 453
Bsu36I CCTNAGG 1 cut(s) 256
BsuRI GGCC 4 cut(s) 131, 137, 455, 943
BtgI CCRYGG 2 cut(s) 132, 733
BtsCI GGATG 2 cut(s) 229, 471
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 2 cut(s) 366, 679
Cac8I GCNNGC 1 cut(s) 619
CciNI GCGGCCGC 1 cut(s) 453
CfoI GCGC 1 cut(s) 350
Cfr13I GGNCC 5 cut(s) 129, 260, 398, 803, 942
Cfr9I CCCGGG 1 cut(s) 331
CseI GACGC 1 cut(s) 30
CviAII CATG 4 cut(s) 151, 182, 345, 544
DdeI CTNAG 4 cut(s) 57, 256, 494, 755
DpnI GATC 5 cut(s) 211, 296, 485, 910, 923
DpnII GATC 5 cut(s) 209, 294, 483, 908, 921
DrdI GACNNNNNNGTC 1 cut(s) 818
DriI GACNNNNNGTC 1 cut(s) 232
DseDI GACNNNNNNGTC 1 cut(s) 818
EaeI YGGCCR 2 cut(s) 135, 453
EagI CGGCCG 1 cut(s) 453
Eam1104I CTCTTC 1 cut(s) 421
Eam1105I GACNNNNNGTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 421
EciI GGCGGA 1 cut(s) 914
EclXI CGGCCG 1 cut(s) 453
Eco130I CCWWGG 1 cut(s) 391
Eco24I GRGCYC 1 cut(s) 583
Eco47I GGWCC 3 cut(s) 260, 398, 803
Eco52I CGGCCG 1 cut(s) 453
Eco72I CACGTG 1 cut(s) 539
Eco81I CCTNAGG 1 cut(s) 256
Eco88I CYCGRG 2 cut(s) 331, 372
EcoO109I RGGNCCY 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 391
EcoT38I GRGCYC 1 cut(s) 583
ErhI CCWWGG 1 cut(s) 391
Esp3I CGTCTC 2 cut(s) 106, 346
FaeI CATG 4 cut(s) 154, 185, 348, 547
FaiI YATR 6 cut(s) 152, 183, 346, 506, 545, 824
FalI AAGNNNNNCTT 4 cut(s) 687, 719, 756, 788
FaqI GGGAC 1 cut(s) 389
FatI CATG 4 cut(s) 150, 181, 344, 543
Fnu4HI GCNGC 2 cut(s) 453, 456
FokI GGATG 2 cut(s) 236, 458
FriOI GRGCYC 1 cut(s) 583
Fsp4HI GCNGC 2 cut(s) 453, 456
FspBI CTAG 2 cut(s) 359, 392
FspI TGCGCA 1 cut(s) 349
GlaI GCGC 1 cut(s) 349
GluI GCNGC 2 cut(s) 453, 456
GsaI CCCAGC 1 cut(s) 267
HaeIII GGCC 4 cut(s) 131, 137, 455, 943
HapII CCGG 5 cut(s) 332, 401, 465, 681, 906
HgaI GACGC 1 cut(s) 30
HhaI GCGC 1 cut(s) 350
Hin1I GRCGYC 2 cut(s) 41, 708
Hin1II CATG 4 cut(s) 154, 185, 348, 547
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HinfI GANTC 6 cut(s) 117, 377, 431, 468, 606, 812
HpaII CCGG 5 cut(s) 332, 401, 465, 681, 906
HphI GGTGA 1 cut(s) 895
Hpy166II GTNNAC 2 cut(s) 398, 534
Hpy188I TCNGA 7 cut(s) 52, 483, 599, 756, 781, 921, 939
Hpy188III TCNNGA 8 cut(s) 109, 121, 258, 374, 465, 681, 704, 719
Hpy8I GTNNAC 2 cut(s) 398, 534
Hpy99I CGWCG 1 cut(s) 442
HpyAV CCTTC 2 cut(s) 176, 859
HpyCH4III ACNGT 7 cut(s) 48, 68, 219, 234, 512, 662, 935
HpyCH4IV ACGT 3 cut(s) 538, 708, 776
HpyCH4V TGCA 1 cut(s) 866
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 449
HpyF3I CTNAG 4 cut(s) 57, 256, 494, 755
HpySE526I ACGT 3 cut(s) 538, 708, 776
Hsp92I GRCGYC 2 cut(s) 41, 708
Hsp92II CATG 4 cut(s) 154, 185, 348, 547
HspAI GCGC 1 cut(s) 348
Kpn2I TCCGGA 2 cut(s) 464, 680
Kzo9I GATC 5 cut(s) 209, 294, 483, 908, 921
LmnI GCTCC 2 cut(s) 408, 683
LweI GCATC 1 cut(s) 345
MaeI CTAG 2 cut(s) 359, 392
MaeII ACGT 3 cut(s) 538, 708, 776
MaeIII GTNAC 5 cut(s) 42, 68, 203, 539, 589
MalI GATC 5 cut(s) 211, 296, 485, 910, 923
MbiI CCGCTC 1 cut(s) 714
MboI GATC 5 cut(s) 209, 294, 483, 908, 921
MboII GAAGA 3 cut(s) 169, 435, 438
MflI RGATCY 3 cut(s) 209, 908, 921
MhlI GDGCHC 3 cut(s) 332, 565, 583
MlsI TGGCCA 1 cut(s) 137
MluNI TGGCCA 1 cut(s) 137
MlyI GAGTC 5 cut(s) 126, 371, 425, 477, 806
MmeI TCCRAC 2 cut(s) 201, 917
Mox20I TGGCCA 1 cut(s) 137
MroI TCCGGA 2 cut(s) 464, 680
MscI TGGCCA 1 cut(s) 137
MseI TTAA 4 cut(s) 5, 312, 795, 879
Msp20I TGGCCA 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 5 cut(s) 332, 401, 465, 681, 906
MspR9I CCNGG 3 cut(s) 332, 333, 402
MvnI CGCG 3 cut(s) 452, 458, 858
MwoI GCNNNNNNNGC 2 cut(s) 368, 449
NciI CCSGG 3 cut(s) 332, 333, 402
NdeII GATC 5 cut(s) 209, 294, 483, 908, 921
NlaIII CATG 4 cut(s) 154, 185, 348, 547
NlaIV GGNNCC 4 cut(s) 211, 262, 679, 910
NmuCI GTSAC 4 cut(s) 42, 68, 203, 539
NotI GCGGCCGC 1 cut(s) 453
NsbI TGCGCA 1 cut(s) 349
NspV TTCGAA 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PfeI GAWTC 1 cut(s) 606
PflFI GACNNNGTC 2 cut(s) 545, 785
PkrI GCNGC 2 cut(s) 454, 457
PleI GAGTC 5 cut(s) 125, 371, 425, 476, 806
PmaCI CACGTG 1 cut(s) 539
PmlI CACGTG 1 cut(s) 539
PpsI GAGTC 5 cut(s) 125, 371, 425, 476, 806
Ppu21I YACGTR 1 cut(s) 539
PpuMI RGGWCCY 1 cut(s) 260
Psp5II RGGWCCY 1 cut(s) 260
PspCI CACGTG 1 cut(s) 539
PspFI CCCAGC 1 cut(s) 263
PspN4I GGNNCC 4 cut(s) 211, 262, 679, 910
PspPI GGNCC 5 cut(s) 129, 260, 398, 803, 942
PspPPI RGGWCCY 1 cut(s) 260
PsuI RGATCY 3 cut(s) 209, 908, 921
PsyI GACNNNGTC 2 cut(s) 545, 785
PvuII CAGCTG 1 cut(s) 61
SaqAI TTAA 4 cut(s) 5, 312, 795, 879
SatI GCNGC 2 cut(s) 453, 456
Sau3AI GATC 5 cut(s) 209, 294, 483, 908, 921
Sau96I GGNCC 5 cut(s) 129, 260, 398, 803, 942
SchI GAGTC 5 cut(s) 126, 371, 425, 477, 806
ScrFI CCNGG 3 cut(s) 332, 333, 402
SduI GDGCHC 3 cut(s) 332, 565, 583
SfaNI GCATC 1 cut(s) 345
SfuI TTCGAA 1 cut(s) 288
SinI GGWCC 3 cut(s) 260, 398, 803
SmaI CCCGGG 1 cut(s) 333
SrfI GCCCGGGC 1 cut(s) 333
SsiI CCGC 5 cut(s) 452, 456, 712, 856, 925
SspMI CTAG 2 cut(s) 359, 392
StyD4I CCNGG 3 cut(s) 330, 331, 400
StyI CCWWGG 1 cut(s) 391
TaaI ACNGT 7 cut(s) 48, 68, 219, 234, 512, 662, 935
TaiI ACGT 3 cut(s) 541, 711, 779
TaqI TCGA 4 cut(s) 288, 297, 627, 729
TauI GCSGC 2 cut(s) 455, 458
TfiI GAWTC 1 cut(s) 606
Tru1I TTAA 4 cut(s) 5, 312, 795, 879
Tru9I TTAA 4 cut(s) 5, 312, 795, 879
TscAI CASTG 2 cut(s) 373, 679
TseFI GTSAC 4 cut(s) 42, 68, 203, 539
Tsp45I GTSAC 4 cut(s) 42, 68, 203, 539
TspGWI ACGGA 3 cut(s) 222, 370, 667
TspMI CCCGGG 1 cut(s) 331
TspRI CASTG 2 cut(s) 373, 679
Tth111I GACNNNGTC 2 cut(s) 545, 785
VpaK11BI GGWCC 3 cut(s) 260, 398, 803
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XmaI CCCGGG 1 cut(s) 331
XmaJI CCTAGG 1 cut(s) 391
XspI CTAG 2 cut(s) 359, 392
ZraI GACGTC 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.