Rroxscaffold_1G00008850

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012787
Physical Location & Seq
Reverse (-)
11125166 .. 11127881
2716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00008850.1

Sequence Viewer

Length: 801 bp
ATGGGGGCTTCTCTCCTTCGCCTTCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGGTCTGTACTCCTAGACGACACTTCTTCTTTCACTGGTGAGAAGACAGCAGGTCCCAACAATAATTCAATTAGGGGATTTGAAGTCATTGACAAGATAAAAACCAAGGTCGAAAAAGCATGCCCCGGCGTCGTTTCGTGTGCTGATATCCTTACCATTGCTGCTCGAGACTCCGTTGTGATTCTTGGAGGGCCAAGCTGGAATGTTAAACTTGGAAGAAGAGATGCCAAGACTACAAGCCTTGCTGCTGCCAATAGTGGTGTCATCCCTCCTCCCACATCTACCCTAAGCAACCTCATCACTAGGTTCCAAGCTGTAGGCCTCTCTACAAGAGACATGGTTGCTTTATCTGGAGCTCACACAATTGGGAAAGCAAGGTGTACAATTTTCAGAGCACGCATATACAGCGAAACCAACATCGATGCTTCATTTGCAAAGACCAGGCAGAACAGTTGCCCATCAACCACTGGCTCAGGAGACAACAACCTTGCACCTCTAGACACTCAAACTCCAAATAGCTTCGACCCTAAATACTTCCAGAACCTCATCAACAAGAAGGGTCTCCTCCACTCTGATCAAATACTGTTCAATGGTGGATCCACAGACTCCTTGGTTAAAACATACAGCGCCAGTGCAAGTACGTTCAATTCTGACTTTGTTAAGGCAATGATCAAGATGGGAGATAATAAACCACTCACTGGGTCTAAGGGTGAGATTAGAAAAAACTGTCGGAAGCCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

266

Amino Acids

28.38

Weight (kDa)

9.36

Isoelectric Point (pI)

25.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 1 - 229 1.5e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012787)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58390 AT5G58400
fragaria_vesca FvH4_3g40180
malus_domestica MD03G1059200.v1.1 MD11G1061400.v1.1
prunus_persica Prupe.6G044000_v2.0.a1 Prupe.6G044300_v2.0.a1
pyrus_communis pycom03g04760 pycom11g05100
rosa_chinensis RchiOBHm_Chr5g0072371
rosa_laevigata RLG00000036295
rosa_multiflora Rmu_sc0000737.1_g000014
rosa_roxburghii Rroxscaffold_1G00008850
rosa_rugosa Rorug05G0417600
rosa_samantha Rh5AG474200 Rh5CG518300 Rh5DG506400
rosa_wichuraiana Rw5G044030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
Acc36I ACCTGC 1 cut(s) 98
AccB7I CCANNNNNTGG 1 cut(s) 755
AclWI GGATC 2 cut(s) 648, 661
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 3 cut(s) 66, 439, 697
AfiI CCNNNNNNNGG 1 cut(s) 755
AgsI TTSAA 4 cut(s) 126, 140, 646, 703
AhdI GACNNNNNGTC 1 cut(s) 108
AjnI CCWGG 1 cut(s) 497
AluBI AGCT 4 cut(s) 255, 371, 413, 576
AluI AGCT 4 cut(s) 255, 371, 413, 576
Alw21I GWGCWC 2 cut(s) 415, 454
Alw26I GTCTC 4 cut(s) 219, 384, 528, 623
AlwI GGATC 2 cut(s) 648, 661
Ama87I CYCGRG 1 cut(s) 222
AoxI GGCC 2 cut(s) 248, 376
ApeKI GCWGC 3 cut(s) 218, 302, 305
AspLEI GCGC 1 cut(s) 686
AspS9I GGNCC 2 cut(s) 110, 248
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 107, 779
AvaI CYCGRG 1 cut(s) 222
AvaII GGWCC 1 cut(s) 110
BamHI GGATCC 1 cut(s) 653
BanII GRGCYC 1 cut(s) 415
BbsI GAAGAC 1 cut(s) 107
Bbv12I GWGCWC 2 cut(s) 415, 454
BbvI GCAGC 3 cut(s) 205, 289, 292
BccI CCATC 3 cut(s) 50, 523, 727
BciT130I CCWGG 1 cut(s) 499
BclI TGATCA 2 cut(s) 631, 726
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 4 cut(s) 219, 384, 528, 623
BfaI CTAG 3 cut(s) 71, 360, 554
BfmI CTRYAG 1 cut(s) 372
BfoI RGCGCY 1 cut(s) 687
BfuAI ACCTGC 1 cut(s) 98
BisI GCNGC 3 cut(s) 219, 303, 306
BlsI GCNGC 3 cut(s) 220, 304, 307
Bme1390I CCNGG 2 cut(s) 183, 499
Bme18I GGWCC 1 cut(s) 110
BmeRI GACNNNNNGTC 1 cut(s) 108
BmeT110I CYCGRG 1 cut(s) 222
BmgT120I GGNCC 2 cut(s) 110, 248
BmiI GGNNCC 3 cut(s) 112, 365, 655
BmrFI CCNGG 2 cut(s) 183, 499
BmrI ACTGGG 1 cut(s) 765
BmsI GCATC 2 cut(s) 271, 469
BmuI ACTGGG 1 cut(s) 765
BpiI GAAGAC 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 429
Bpu10I CCTNAGC 2 cut(s) 344, 529
BpuMI CCSGG 1 cut(s) 183
Bsa29I ATCGAT 1 cut(s) 477
BsaHI GRCGYC 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 623
BsaJI CCNNGG 3 cut(s) 162, 181, 666
BsaXI ACNNNNNCTCC 2 cut(s) 550, 580
Bsc4I CCNNNNNNNGG 1 cut(s) 755
Bse1I ACTGG 4 cut(s) 97, 529, 687, 760
Bse3DI GCAATG 2 cut(s) 213, 729
BseBI CCWGG 1 cut(s) 499
BseCI ATCGAT 1 cut(s) 477
BseDI CCNNGG 3 cut(s) 162, 181, 666
BseGI GGATG 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 755
BseMI GCAATG 2 cut(s) 213, 729
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 4 cut(s) 97, 529, 687, 760
BseRI GAGGAG 2 cut(s) 318, 611
BseXI GCAGC 3 cut(s) 205, 289, 292
BshFI GGCC 2 cut(s) 250, 378
BshVI ATCGAT 1 cut(s) 477
BsiHKAI GWGCWC 2 cut(s) 415, 454
BsiHKCI CYCGRG 1 cut(s) 222
BsiSI CCGG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 755
BsmAI GTCTC 4 cut(s) 219, 384, 528, 623
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 2 cut(s) 250, 378
Bso31I GGTCTC 1 cut(s) 623
BsoBI CYCGRG 1 cut(s) 222
Bsp1286I GDGCHC 2 cut(s) 415, 454
Bsp1407I TGTACA 1 cut(s) 437
Bsp143I GATC 3 cut(s) 631, 653, 726
BspANI GGCC 2 cut(s) 250, 378
BspCNI CTCAG 1 cut(s) 542
BspDI ATCGAT 1 cut(s) 477
BspLI GGNNCC 3 cut(s) 112, 365, 655
BspMI ACCTGC 1 cut(s) 98
BspPI GGATC 2 cut(s) 648, 661
BspTNI GGTCTC 1 cut(s) 623
BsrDI GCAATG 2 cut(s) 213, 729
BsrGI TGTACA 1 cut(s) 437
BsrI ACTGG 4 cut(s) 97, 529, 687, 760
BssECI CCNNGG 3 cut(s) 162, 181, 666
BssMI GATC 3 cut(s) 631, 653, 726
BssNI GRCGYC 1 cut(s) 186
BssT1I CCWWGG 2 cut(s) 162, 666
Bst2UI CCWGG 1 cut(s) 499
Bst4CI ACNGT 3 cut(s) 509, 642, 785
Bst6I CTCTTC 1 cut(s) 271
BstACI GRCGYC 1 cut(s) 186
BstAUI TGTACA 1 cut(s) 437
BstC8I GCNNGC 2 cut(s) 178, 454
BstDEI CTNAG 3 cut(s) 344, 529, 762
BstF5I GGATG 1 cut(s) 321
BstH2I RGCGCY 1 cut(s) 687
BstHHI GCGC 1 cut(s) 686
BstKTI GATC 3 cut(s) 634, 656, 729
BstMAI GTCTC 4 cut(s) 219, 384, 528, 623
BstMBI GATC 3 cut(s) 631, 653, 726
BstMWI GCNNNNNNNGC 2 cut(s) 462, 488
BstNI CCWGG 1 cut(s) 499
BstNSI RCATGY 1 cut(s) 180
BstSCI CCNGG 2 cut(s) 181, 497
BstSFI CTRYAG 1 cut(s) 372
BstV1I GCAGC 3 cut(s) 205, 289, 292
BstV2I GAAGAC 1 cut(s) 107
BstX2I RGATCY 1 cut(s) 653
BstYI RGATCY 1 cut(s) 653
Bsu15I ATCGAT 1 cut(s) 477
BsuRI GGCC 2 cut(s) 250, 378
BsuTUI ATCGAT 1 cut(s) 477
BtsCI GGATG 1 cut(s) 321
BtsIMutI CAGTG 4 cut(s) 90, 522, 694, 753
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 2 cut(s) 178, 454
CfoI GCGC 1 cut(s) 686
Cfr13I GGNCC 2 cut(s) 110, 248
ClaI ATCGAT 1 cut(s) 477
CseI GACGC 1 cut(s) 175
Csp6I GTAC 3 cut(s) 65, 438, 696
CviAII CATG 3 cut(s) 32, 177, 394
CviQI GTAC 3 cut(s) 65, 438, 696
DdeI CTNAG 3 cut(s) 344, 529, 762
DpnI GATC 3 cut(s) 633, 655, 728
DpnII GATC 3 cut(s) 631, 653, 726
DrdI GACNNNNNNGTC 1 cut(s) 41
DriI GACNNNNNGTC 1 cut(s) 108
DseDI GACNNNNNNGTC 1 cut(s) 41
Eam1104I CTCTTC 1 cut(s) 271
Eam1105I GACNNNNNGTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 271
Ecl136II GAGCTC 1 cut(s) 413
Eco130I CCWWGG 2 cut(s) 162, 666
Eco147I AGGCCT 1 cut(s) 378
Eco24I GRGCYC 1 cut(s) 415
Eco31I GGTCTC 1 cut(s) 623
Eco32I GATATC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 413
Eco88I CYCGRG 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 413
EcoO109I RGGNCCY 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 497
EcoRV GATATC 1 cut(s) 205
EcoT14I CCWWGG 2 cut(s) 162, 666
EcoT38I GRGCYC 1 cut(s) 415
ErhI CCWWGG 2 cut(s) 162, 666
FaeI CATG 3 cut(s) 35, 180, 397
FaiI YATR 6 cut(s) 33, 178, 395, 458, 460, 679
FaqI GGGAC 1 cut(s) 96
FatI CATG 3 cut(s) 31, 176, 393
FbaI TGATCA 2 cut(s) 631, 726
Fnu4HI GCNGC 3 cut(s) 219, 303, 306
FokI GGATG 1 cut(s) 308
FriOI GRGCYC 1 cut(s) 415
Fsp4HI GCNGC 3 cut(s) 219, 303, 306
FspBI CTAG 3 cut(s) 71, 360, 554
GlaI GCGC 1 cut(s) 685
GluI GCNGC 3 cut(s) 219, 303, 306
GsuI CTGGAG 1 cut(s) 429
HaeII RGCGCY 1 cut(s) 687
HaeIII GGCC 2 cut(s) 250, 378
HapII CCGG 1 cut(s) 183
HgaI GACGC 1 cut(s) 175
HhaI GCGC 1 cut(s) 686
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 3 cut(s) 35, 180, 397
Hin6I GCGC 1 cut(s) 684
HinP1I GCGC 1 cut(s) 684
HinfI GANTC 3 cut(s) 227, 238, 662
HpaII CCGG 1 cut(s) 183
HphI GGTGA 2 cut(s) 107, 779
Hpy166II GTNNAC 1 cut(s) 438
Hpy188I TCNGA 4 cut(s) 449, 631, 709, 789
Hpy188III TCNNGA 6 cut(s) 224, 408, 531, 554, 595, 730
Hpy8I GTNNAC 1 cut(s) 438
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 3 cut(s) 26, 32, 607
HpyCH4III ACNGT 3 cut(s) 509, 642, 785
HpyCH4IV ACGT 1 cut(s) 698
HpyCH4V TGCA 3 cut(s) 491, 548, 692
HpyF10VI GCNNNNNNNGC 2 cut(s) 462, 488
HpyF3I CTNAG 3 cut(s) 344, 529, 762
HpySE526I ACGT 1 cut(s) 698
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 3 cut(s) 35, 180, 397
HspAI GCGC 1 cut(s) 684
Ksp22I TGATCA 2 cut(s) 631, 726
Kzo9I GATC 3 cut(s) 631, 653, 726
LmnI GCTCC 1 cut(s) 410
Lsp1109I GCAGC 3 cut(s) 205, 289, 292
LweI GCATC 2 cut(s) 271, 469
MaeI CTAG 3 cut(s) 71, 360, 554
MaeII ACGT 1 cut(s) 698
MalI GATC 3 cut(s) 633, 655, 728
MboI GATC 3 cut(s) 631, 653, 726
MboII GAAGA 4 cut(s) 75, 112, 285, 288
MfeI CAATTG 1 cut(s) 420
MflI RGATCY 1 cut(s) 653
MhlI GDGCHC 2 cut(s) 415, 454
MluCI AATT 6 cut(s) 121, 126, 420, 441, 703, 796
MlyI GAGTC 2 cut(s) 221, 656
MmeI TCCRAC 1 cut(s) 767
MnlI CCTC 8 cut(s) 239, 336, 339, 362, 389, 561, 611, 632
MseI TTAA 4 cut(s) 264, 672, 717, 799
MslI CAYNNNNRTG 1 cut(s) 30
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 2 cut(s) 183, 499
MunI CAATTG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 499
MwoI GCNNNNNNNGC 2 cut(s) 462, 488
NciI CCSGG 1 cut(s) 183
NdeII GATC 3 cut(s) 631, 653, 726
NlaIII CATG 3 cut(s) 35, 180, 397
NlaIV GGNNCC 3 cut(s) 112, 365, 655
NspI RCATGY 1 cut(s) 180
PaeI GCATGC 1 cut(s) 180
PaeR7I CTCGAG 1 cut(s) 222
PceI AGGCCT 1 cut(s) 378
PfeI GAWTC 1 cut(s) 238
PflMI CCANNNNNTGG 1 cut(s) 755
PkrI GCNGC 3 cut(s) 220, 304, 307
PleI GAGTC 2 cut(s) 221, 656
PpsI GAGTC 2 cut(s) 221, 656
PpuMI RGGWCCY 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 415
Psp5II RGGWCCY 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 497
PspGI CCWGG 1 cut(s) 497
PspN4I GGNNCC 3 cut(s) 112, 365, 655
PspPI GGNCC 2 cut(s) 110, 248
PspPPI RGGWCCY 1 cut(s) 110
PsuI RGATCY 1 cut(s) 653
RsaI GTAC 3 cut(s) 66, 439, 697
RsaNI GTAC 3 cut(s) 65, 438, 696
RseI CAYNNNNRTG 1 cut(s) 30
SacI GAGCTC 1 cut(s) 415
SaqAI TTAA 4 cut(s) 264, 672, 717, 799
SatI GCNGC 3 cut(s) 219, 303, 306
Sau3AI GATC 3 cut(s) 631, 653, 726
Sau96I GGNCC 2 cut(s) 110, 248
SchI GAGTC 2 cut(s) 221, 656
ScrFI CCNGG 2 cut(s) 183, 499
SduI GDGCHC 2 cut(s) 415, 454
SfaNI GCATC 2 cut(s) 271, 469
SfcI CTRYAG 1 cut(s) 372
Sfr274I CTCGAG 1 cut(s) 222
SinI GGWCC 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
SphI GCATGC 1 cut(s) 180
Sse9I AATT 6 cut(s) 121, 126, 420, 441, 703, 796
SseBI AGGCCT 1 cut(s) 378
SspMI CTAG 3 cut(s) 71, 360, 554
SstI GAGCTC 1 cut(s) 415
StuI AGGCCT 1 cut(s) 378
StyD4I CCNGG 2 cut(s) 181, 497
StyI CCWWGG 2 cut(s) 162, 666
TaaI ACNGT 3 cut(s) 509, 642, 785
TaiI ACGT 1 cut(s) 701
TaqI TCGA 4 cut(s) 168, 223, 477, 579
TasI AATT 6 cut(s) 121, 126, 420, 441, 703, 796
TatI WGTACW 2 cut(s) 64, 437
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 4 cut(s) 264, 672, 717, 799
Tru9I TTAA 4 cut(s) 264, 672, 717, 799
TscAI CASTG 4 cut(s) 97, 529, 694, 760
TseI GCWGC 3 cut(s) 218, 302, 305
TspDTI ATGAA 1 cut(s) 474
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 4 cut(s) 97, 529, 694, 760
Van91I CCANNNNNTGG 1 cut(s) 755
VpaK11BI GGWCC 1 cut(s) 110
XbaI TCTAGA 1 cut(s) 553
XceI RCATGY 1 cut(s) 180
XcmI CCANNNNNNNNNTGG 1 cut(s) 664
XhoI CTCGAG 1 cut(s) 222
XspI CTAG 3 cut(s) 71, 360, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.