MD11G1061400.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0012787
Physical Location & Seq
Forward (+)
5338009 .. 5341504
3496 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1061400.v1.1.491

Sequence Viewer

Length: 984 bp
ATGGCTTTCAGTAATACTTTTTCTTTGTGTTCCATATTGATAATTGTCACAGTAGGTGTTCTTGTGGGTTTCACTGGGAGCTCTTCTGCTCAACTCTCTACGAATTTCTATTCTAAGAGTTGTCCTAAAGTTTTTGATACAGTCAAATCTGTTGTCAAGTCTGCTGTATCTAAAGAAAAGCGCATGGGCGCTTCTCTTCTTCGCCTTCACTTTCATGACTGCTTCGTCAACGGTTGTGATGGATCTCTATTACTGGACGACACTTCTTCCTTCACCGGTGAGAAGACTGCAGGCCCGAATAACAACTCGGTAAGAGGGTTTGAGGTTGTGGACAAGATCAAGTCCCAAGTGGAAAAGGCATGCCCCGGCGTCGTTTCCTGTGCTGATATCTTAGCTATTGCTTCTCGAGACTCCGTTCAAATTCTTGGAGGACCAAGTTGGGAGGTTAAACTTGGAAGAAGGGATTCAAAGACAGCTAGCCTATCGGCTGCCAATAGTGGAGTCATCCCTCCTCCTACTGCCACCCTCAACGAGCTCGTCACCAGGTTCCGAGCTGTAGGTCTCTCTCAAAGGGACTTGGTAGCCTTATCTGGAGCTCACACAATTGGACAAGCAAGGTGTACAACTTTCAGAGCTCGCGTATACAACGAGACCAACATTGATGCTTCATTTGCCAGGACCAGACAAAACACATGTCCAAGAACAGTTGGCTCCGGAGACAACAACCTTGCACCTTTAGACGTTACGACCCCAAATACCTTCGACACTGCCTACTTCAAGAACCTTGTCAACCGAAAGGGTCTCCTCCACAGTGATCAAATTTTGTTTAACGGCGGAGCCACCGATTCATTGGTTAAATCCTACAGCGGCAATGCTGAAACCTTCAATGCTGACTTTGCCAAGGCAATGATCAAGATGGGAGATAACAAGCCACTTACTGGATCTAAGGGCGAGATTAGATTGAACTGCAGGAAGCCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

328

Amino Acids

34.94

Weight (kDa)

9.3

Isoelectric Point (pI)

23.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 48 - 290 2.2e-87 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012787)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58390 AT5G58400
fragaria_vesca FvH4_3g40180
malus_domestica MD03G1059200.v1.1 MD11G1061400.v1.1
prunus_persica Prupe.6G044000_v2.0.a1 Prupe.6G044300_v2.0.a1
pyrus_communis pycom03g04760 pycom11g05100
rosa_chinensis RchiOBHm_Chr5g0072371
rosa_laevigata RLG00000036295
rosa_multiflora Rmu_sc0000737.1_g000014
rosa_roxburghii Rroxscaffold_1G00008850
rosa_rugosa Rorug05G0417600
rosa_samantha Rh5AG474200 Rh5CG518300 Rh5DG506400
rosa_wichuraiana Rw5G044030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AccB7I CCANNNNNTGG 1 cut(s) 938
AccI GTMKAC 1 cut(s) 642
AccII CGCG 1 cut(s) 639
AccIII TCCGGA 1 cut(s) 713
AciI CCGC 2 cut(s) 834, 867
AclWI GGATC 2 cut(s) 250, 949
AcsI RAATTY 3 cut(s) 103, 420, 819
AcyI GRCGYC 1 cut(s) 369
AfaI GTAC 1 cut(s) 622
AfiI CCNNNNNNNGG 1 cut(s) 938
AflIII ACRYGT 1 cut(s) 692
AgeI ACCGGT 1 cut(s) 275
AgsI TTSAA 5 cut(s) 419, 468, 778, 886, 964
AjnI CCWGG 2 cut(s) 542, 674
AluBI AGCT 7 cut(s) 81, 395, 476, 535, 554, 596, 635
AluI AGCT 7 cut(s) 81, 395, 476, 535, 554, 596, 635
Alw21I GWGCWC 4 cut(s) 83, 537, 598, 637
Alw26I GTCTC 5 cut(s) 402, 566, 644, 711, 806
AlwI GGATC 2 cut(s) 250, 949
Ama87I CYCGRG 1 cut(s) 405
Aor13HI TCCGGA 1 cut(s) 713
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 1 cut(s) 488
ApoI RAATTY 3 cut(s) 103, 420, 819
ArsI GACNNNNNNTTYG 4 cut(s) 138, 170, 679, 711
AsiGI ACCGGT 1 cut(s) 275
Asp700I GAANNNNTTC 1 cut(s) 463
AspLEI GCGC 2 cut(s) 183, 191
AspS9I GGNCC 3 cut(s) 293, 431, 678
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 3 cut(s) 265, 290, 532
AsuNHI GCTAGC 1 cut(s) 476
AvaI CYCGRG 1 cut(s) 405
AvaII GGWCC 2 cut(s) 431, 678
BanII GRGCYC 4 cut(s) 83, 537, 598, 637
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 4 cut(s) 83, 537, 598, 637
BbvI GCAGC 1 cut(s) 475
BccI CCATC 2 cut(s) 233, 910
BceAI ACGGC 1 cut(s) 847
BciT130I CCWGG 2 cut(s) 544, 676
BclI TGATCA 2 cut(s) 814, 909
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 5 cut(s) 402, 566, 644, 711, 806
BfaI CTAG 1 cut(s) 477
BfmI CTRYAG 4 cut(s) 288, 555, 862, 967
BfoI RGCGCY 1 cut(s) 192
BisI GCNGC 2 cut(s) 489, 868
BlsI GCNGC 2 cut(s) 490, 869
Bme1390I CCNGG 3 cut(s) 366, 544, 676
Bme18I GGWCC 2 cut(s) 431, 678
BmeT110I CYCGRG 1 cut(s) 405
BmgT120I GGNCC 3 cut(s) 293, 431, 678
BmiI GGNNCC 3 cut(s) 548, 712, 838
BmrFI CCNGG 3 cut(s) 366, 544, 676
BmrI ACTGGG 1 cut(s) 84
BmsI GCATC 1 cut(s) 652
BmtI GCTAGC 1 cut(s) 480
BmuI ACTGGG 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 612
BpuMI CCSGG 1 cut(s) 366
BsaHI GRCGYC 1 cut(s) 369
BsaI GGTCTC 3 cut(s) 566, 644, 806
BsaJI CCNNGG 2 cut(s) 364, 900
BsaWI WCCGGW 2 cut(s) 275, 713
Bsc4I CCNNNNNNNGG 1 cut(s) 938
Bse118I RCCGGY 1 cut(s) 275
Bse1I ACTGG 3 cut(s) 79, 258, 943
Bse3DI GCAATG 2 cut(s) 877, 912
BseAI TCCGGA 1 cut(s) 713
BseBI CCWGG 2 cut(s) 544, 676
BseDI CCNNGG 2 cut(s) 364, 900
BseGI GGATG 1 cut(s) 504
BseLI CCNNNNNNNGG 1 cut(s) 938
BseMI GCAATG 2 cut(s) 877, 912
BseNI ACTGG 3 cut(s) 79, 258, 943
BseRI GAGGAG 2 cut(s) 501, 794
BseXI GCAGC 1 cut(s) 475
Bsh1236I CGCG 1 cut(s) 639
BshFI GGCC 1 cut(s) 294
BshTI ACCGGT 1 cut(s) 275
BsiHKAI GWGCWC 4 cut(s) 83, 537, 598, 637
BsiHKCI CYCGRG 1 cut(s) 405
BsiSI CCGG 3 cut(s) 276, 366, 714
BslFI GGGAC 2 cut(s) 328, 587
BslI CCNNNNNNNGG 1 cut(s) 938
BsmAI GTCTC 5 cut(s) 402, 566, 644, 711, 806
BsmFI GGGAC 2 cut(s) 328, 587
BsnI GGCC 1 cut(s) 294
Bso31I GGTCTC 3 cut(s) 566, 644, 806
BsoBI CYCGRG 1 cut(s) 405
Bsp1286I GDGCHC 4 cut(s) 83, 537, 598, 637
Bsp13I TCCGGA 1 cut(s) 713
Bsp1407I TGTACA 1 cut(s) 620
Bsp143I GATC 5 cut(s) 242, 336, 814, 909, 941
BspACI CCGC 2 cut(s) 834, 867
BspANI GGCC 1 cut(s) 294
BspEI TCCGGA 1 cut(s) 713
BspFNI CGCG 1 cut(s) 639
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 3 cut(s) 548, 712, 838
BspMAI CTGCAG 2 cut(s) 292, 971
BspOI GCTAGC 1 cut(s) 480
BspPI GGATC 2 cut(s) 250, 949
BspQI GCTCTTC 1 cut(s) 88
BspTNI GGTCTC 3 cut(s) 566, 644, 806
BsrDI GCAATG 2 cut(s) 877, 912
BsrFI RCCGGY 1 cut(s) 275
BsrGI TGTACA 1 cut(s) 620
BsrI ACTGG 3 cut(s) 79, 258, 943
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 2 cut(s) 364, 900
BssMI GATC 5 cut(s) 242, 336, 814, 909, 941
BssNAI GTATAC 1 cut(s) 643
BssNI GRCGYC 1 cut(s) 369
BssT1I CCWWGG 1 cut(s) 900
Bst1107I GTATAC 1 cut(s) 643
Bst2UI CCWGG 2 cut(s) 544, 676
Bst4CI ACNGT 5 cut(s) 52, 142, 233, 706, 812
Bst6I CTCTTC 2 cut(s) 88, 201
BstACI GRCGYC 1 cut(s) 369
BstAUI TGTACA 1 cut(s) 620
BstC8I GCNNGC 4 cut(s) 292, 361, 478, 637
BstDEI CTNAG 3 cut(s) 114, 391, 945
BstF5I GGATG 1 cut(s) 504
BstFNI CGCG 1 cut(s) 639
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 2 cut(s) 183, 191
BstKTI GATC 5 cut(s) 245, 339, 817, 912, 944
BstMAI GTCTC 5 cut(s) 402, 566, 644, 711, 806
BstMBI GATC 5 cut(s) 242, 336, 814, 909, 941
BstMWI GCNNNNNNNGC 2 cut(s) 671, 896
BstNI CCWGG 2 cut(s) 544, 676
BstNSI RCATGY 2 cut(s) 363, 696
BstSCI CCNGG 3 cut(s) 364, 542, 674
BstSFI CTRYAG 4 cut(s) 288, 555, 862, 967
BstUI CGCG 1 cut(s) 639
BstV1I GCAGC 1 cut(s) 475
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 2 cut(s) 242, 941
BstYI RGATCY 2 cut(s) 242, 941
BstZ17I GTATAC 1 cut(s) 643
BsuRI GGCC 1 cut(s) 294
BtsCI GGATG 1 cut(s) 504
BtsI GCAGTG 1 cut(s) 765
BtsIMutI CAGTG 3 cut(s) 72, 765, 817
Cac8I GCNNGC 4 cut(s) 292, 361, 478, 637
CciI TCATGA 1 cut(s) 214
CfoI GCGC 2 cut(s) 183, 191
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 3 cut(s) 293, 431, 678
CseI GACGC 1 cut(s) 358
CsiI ACCWGGT 1 cut(s) 542
Csp6I GTAC 1 cut(s) 621
CspAI ACCGGT 1 cut(s) 275
CviAII CATG 4 cut(s) 184, 215, 360, 693
CviQI GTAC 1 cut(s) 621
DdeI CTNAG 3 cut(s) 114, 391, 945
DpnI GATC 5 cut(s) 244, 338, 816, 911, 943
DpnII GATC 5 cut(s) 242, 336, 814, 909, 941
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
Eam1104I CTCTTC 2 cut(s) 88, 201
EarI CTCTTC 2 cut(s) 88, 201
EciI GGCGGA 1 cut(s) 849
Ecl136II GAGCTC 4 cut(s) 81, 535, 596, 635
Eco130I CCWWGG 1 cut(s) 900
Eco24I GRGCYC 4 cut(s) 83, 537, 598, 637
Eco31I GGTCTC 3 cut(s) 566, 644, 806
Eco32I GATATC 1 cut(s) 388
Eco47I GGWCC 2 cut(s) 431, 678
Eco53kI GAGCTC 4 cut(s) 81, 535, 596, 635
Eco88I CYCGRG 1 cut(s) 405
EcoICRI GAGCTC 4 cut(s) 81, 535, 596, 635
EcoRII CCWGG 2 cut(s) 542, 674
EcoRV GATATC 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 900
EcoT38I GRGCYC 4 cut(s) 83, 537, 598, 637
ErhI CCWWGG 1 cut(s) 900
FaeI CATG 4 cut(s) 187, 218, 363, 696
FaiI YATR 6 cut(s) 35, 185, 216, 361, 643, 694
FaqI GGGAC 2 cut(s) 328, 587
FatI CATG 4 cut(s) 183, 214, 359, 692
FbaI TGATCA 2 cut(s) 814, 909
FblI GTMKAC 1 cut(s) 642
Fnu4HI GCNGC 2 cut(s) 489, 868
FokI GGATG 1 cut(s) 491
FriOI GRGCYC 4 cut(s) 83, 537, 598, 637
Fsp4HI GCNGC 2 cut(s) 489, 868
FspBI CTAG 1 cut(s) 477
GlaI GCGC 2 cut(s) 182, 190
GluI GCNGC 2 cut(s) 489, 868
GsuI CTGGAG 1 cut(s) 612
HaeII RGCGCY 1 cut(s) 192
HaeIII GGCC 1 cut(s) 294
HapII CCGG 3 cut(s) 276, 366, 714
HgaI GACGC 1 cut(s) 358
HhaI GCGC 2 cut(s) 183, 191
Hin1I GRCGYC 1 cut(s) 369
Hin1II CATG 4 cut(s) 187, 218, 363, 696
Hin6I GCGC 2 cut(s) 181, 189
HinP1I GCGC 2 cut(s) 181, 189
HincII GTYRAC 2 cut(s) 229, 790
HindII GTYRAC 2 cut(s) 229, 790
HinfI GANTC 4 cut(s) 410, 464, 501, 845
HpaII CCGG 3 cut(s) 276, 366, 714
HphI GGTGA 3 cut(s) 265, 290, 532
Hpy166II GTNNAC 5 cut(s) 229, 331, 621, 643, 790
Hpy188I TCNGA 2 cut(s) 551, 632
Hpy188III TCNNGA 7 cut(s) 215, 405, 407, 591, 714, 778, 913
Hpy8I GTNNAC 5 cut(s) 229, 331, 621, 643, 790
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 5 cut(s) 215, 280, 453, 769, 892
HpyCH4III ACNGT 5 cut(s) 52, 142, 233, 706, 812
HpyCH4IV ACGT 1 cut(s) 741
HpyCH4V TGCA 3 cut(s) 290, 731, 969
HpyF10VI GCNNNNNNNGC 2 cut(s) 671, 896
HpyF3I CTNAG 3 cut(s) 114, 391, 945
HpySE526I ACGT 1 cut(s) 741
Hsp92I GRCGYC 1 cut(s) 369
Hsp92II CATG 4 cut(s) 187, 218, 363, 696
HspAI GCGC 2 cut(s) 181, 189
Kpn2I TCCGGA 1 cut(s) 713
Ksp22I TGATCA 2 cut(s) 814, 909
Kzo9I GATC 5 cut(s) 242, 336, 814, 909, 941
LguI GCTCTTC 1 cut(s) 88
LmnI GCTCC 4 cut(s) 78, 593, 716, 836
Lsp1109I GCAGC 1 cut(s) 475
LweI GCATC 1 cut(s) 652
MabI ACCWGGT 1 cut(s) 542
MaeI CTAG 1 cut(s) 477
MaeII ACGT 1 cut(s) 741
MaeIII GTNAC 3 cut(s) 46, 538, 742
MalI GATC 5 cut(s) 244, 338, 816, 911, 943
MboI GATC 5 cut(s) 242, 336, 814, 909, 941
MboII GAAGA 6 cut(s) 75, 188, 191, 258, 295, 468
MfeI CAATTG 1 cut(s) 603
MflI RGATCY 2 cut(s) 242, 941
MhlI GDGCHC 4 cut(s) 83, 537, 598, 637
MluCI AATT 6 cut(s) 42, 103, 420, 603, 819, 979
MlyI GAGTC 2 cut(s) 404, 510
MnlI CCTC 8 cut(s) 308, 316, 422, 436, 519, 522, 536, 815
MroI TCCGGA 1 cut(s) 713
MroXI GAANNNNTTC 1 cut(s) 463
MseI TTAA 4 cut(s) 447, 828, 855, 982
MslI CAYNNNNRTG 1 cut(s) 213
MspA1I CMGCKG 1 cut(s) 867
MspI CCGG 3 cut(s) 276, 366, 714
MspR9I CCNGG 3 cut(s) 366, 544, 676
MunI CAATTG 1 cut(s) 603
MvaI CCWGG 2 cut(s) 544, 676
MvnI CGCG 1 cut(s) 639
MwoI GCNNNNNNNGC 2 cut(s) 671, 896
NciI CCSGG 1 cut(s) 366
NdeII GATC 5 cut(s) 242, 336, 814, 909, 941
NheI GCTAGC 1 cut(s) 476
NlaIII CATG 4 cut(s) 187, 218, 363, 696
NlaIV GGNNCC 3 cut(s) 548, 712, 838
NmuCI GTSAC 2 cut(s) 46, 538
NspI RCATGY 2 cut(s) 363, 696
PaeI GCATGC 1 cut(s) 363
PaeR7I CTCGAG 1 cut(s) 405
PagI TCATGA 1 cut(s) 214
PciI ACATGT 1 cut(s) 692
PciSI GCTCTTC 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 463
PfeI GAWTC 2 cut(s) 464, 845
PflMI CCANNNNNTGG 1 cut(s) 938
PinAI ACCGGT 1 cut(s) 275
PkrI GCNGC 2 cut(s) 490, 869
PleI GAGTC 2 cut(s) 404, 509
PpsI GAGTC 2 cut(s) 404, 509
PscI ACATGT 1 cut(s) 692
Psp124BI GAGCTC 4 cut(s) 83, 537, 598, 637
Psp6I CCWGG 2 cut(s) 542, 674
PspGI CCWGG 2 cut(s) 542, 674
PspN4I GGNNCC 3 cut(s) 548, 712, 838
PspPI GGNCC 3 cut(s) 293, 431, 678
PstI CTGCAG 2 cut(s) 292, 971
PsuI RGATCY 2 cut(s) 242, 941
RsaI GTAC 1 cut(s) 622
RsaNI GTAC 1 cut(s) 621
RseI CAYNNNNRTG 1 cut(s) 213
SacI GAGCTC 4 cut(s) 83, 537, 598, 637
SapI GCTCTTC 1 cut(s) 88
SaqAI TTAA 4 cut(s) 447, 828, 855, 982
SatI GCNGC 2 cut(s) 489, 868
Sau3AI GATC 5 cut(s) 242, 336, 814, 909, 941
Sau96I GGNCC 3 cut(s) 293, 431, 678
SchI GAGTC 2 cut(s) 404, 510
ScrFI CCNGG 3 cut(s) 366, 544, 676
SduI GDGCHC 4 cut(s) 83, 537, 598, 637
SexAI ACCWGGT 1 cut(s) 542
SfaNI GCATC 1 cut(s) 652
SfcI CTRYAG 4 cut(s) 288, 555, 862, 967
Sfr274I CTCGAG 1 cut(s) 405
SgrAI CRCCGGYG 1 cut(s) 275
SinI GGWCC 2 cut(s) 431, 678
SlaI CTCGAG 1 cut(s) 405
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
SphI GCATGC 1 cut(s) 363
Sse9I AATT 6 cut(s) 42, 103, 420, 603, 819, 979
SsiI CCGC 2 cut(s) 834, 867
SspMI CTAG 1 cut(s) 477
SstI GAGCTC 4 cut(s) 83, 537, 598, 637
StyD4I CCNGG 3 cut(s) 364, 542, 674
StyI CCWWGG 1 cut(s) 900
TaaI ACNGT 5 cut(s) 52, 142, 233, 706, 812
TaiI ACGT 1 cut(s) 744
TaqI TCGA 2 cut(s) 406, 762
TasI AATT 6 cut(s) 42, 103, 420, 603, 819, 979
TatI WGTACW 1 cut(s) 620
TauI GCSGC 1 cut(s) 870
TfiI GAWTC 2 cut(s) 464, 845
Tru1I TTAA 4 cut(s) 447, 828, 855, 982
Tru9I TTAA 4 cut(s) 447, 828, 855, 982
TscAI CASTG 3 cut(s) 79, 772, 817
TseFI GTSAC 2 cut(s) 46, 538
TseI GCWGC 1 cut(s) 488
Tsp45I GTSAC 2 cut(s) 46, 538
TspDTI ATGAA 3 cut(s) 203, 657, 837
TspGWI ACGGA 1 cut(s) 403
TspRI CASTG 3 cut(s) 79, 772, 817
Van91I CCANNNNNTGG 1 cut(s) 938
VpaK11BI GGWCC 2 cut(s) 431, 678
XapI RAATTY 3 cut(s) 103, 420, 819
XceI RCATGY 2 cut(s) 363, 696
XcmI CCANNNNNNNNNTGG 1 cut(s) 847
XhoI CTCGAG 1 cut(s) 405
XmiI GTMKAC 1 cut(s) 642
XmnI GAANNNNTTC 1 cut(s) 463
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.