FvH4_3g40180

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012787
Physical Location & Seq
Forward (+)
33955825 .. 33959528
3704 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40180.t1

Sequence Viewer

Length: 984 bp
ATGGCTTCGTCTACTAGATTTTCTTTCTGTTCCATACTTGTCATTGTCATGTTGGGTGTTCTTGCTGGTTTCCCAGGGAGATCTTCTGCTCAACTCTCAACGAATTTCTATTCAGGAAGCTGCCCTAAGCTTTTCACCACTGTTAAGTCTGTTGTTCAGTCCGCGATCTCCAACGAAAATCGCATCGGGGCCTCTCTCCTTCGCCTTCATTTCCATGACTGCTTCGTCAATGGATGTGATGGGTCAGTTCTCCTAGACGACACTTCATCTTTCACTGGTGAGAAGACAGCTGGTCCCAACAATAATTCGCTTAGAGGATTTGATGTTGTTGATAAGATAAAAACCAAGGTCGAAAAAGCATGTCCAGGCGTTGTTTCGTGTGCTGATATTGTTACCATTGCTGCTCGAGACTCCGTTGTGATTCTTGGAGGGCCAAGCTGGAGTGTTAAACTTGGTAGAAGAGATGCCAAGACTACTACCCTTGCAGCTGCTAATAGTGGTGTTATTCCTGCTCCTACAAATGACCTAAGCGACCTCATCACTAAGTTCCAAGCTCAAGGCCTTTCTACAACAGACATGGTCGCTTTATCTGGAGCTCACACTATTGGGAAAGCAAGGTGTACAGTTTTCAGAGACCGCATATACAACGAAACCAACATCGATGCTTCATTTGCAAAGACTAGGCAGAACAATTGCCCCTCAACCTCTGGCTCAGGAGACAACAATCTTGCACCTCTAGACACTCAAACTACAAACGCCTTCGACCCTAAGTACTTCCAGAACCTCATCAACAAGAAGGGTCTCCTTCACTCTGATCAAGAACTGTTTAATGGTGGATCCACAGACTCATTGGTTAAAAAATACAGCGCCAGTGCTAAGAACTTCAATGCAGACTTTGCTAAGGCAATGATCAAGATGGGAGATATTAAGCCACTCACAGGATCTCAGGGTGAGATCAGGAAAAATTGTAGGAAGCGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

328

Amino Acids

34.92

Weight (kDa)

9.26

Isoelectric Point (pI)

26.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 48 - 290 7.8e-88 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012787)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58390 AT5G58400
fragaria_vesca FvH4_3g40180
malus_domestica MD03G1059200.v1.1 MD11G1061400.v1.1
prunus_persica Prupe.6G044000_v2.0.a1 Prupe.6G044300_v2.0.a1
pyrus_communis pycom03g04760 pycom11g05100
rosa_chinensis RchiOBHm_Chr5g0072371
rosa_laevigata RLG00000036295
rosa_multiflora Rmu_sc0000737.1_g000014
rosa_roxburghii Rroxscaffold_1G00008850
rosa_rugosa Rorug05G0417600
rosa_samantha Rh5AG474200 Rh5CG518300 Rh5DG506400
rosa_wichuraiana Rw5G044030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AccI GTMKAC 1 cut(s) 11
AccII CGCG 1 cut(s) 164
AciI CCGC 2 cut(s) 162, 637
AclWI GGATC 3 cut(s) 831, 844, 949
AcsI RAATTY 1 cut(s) 103
AfaI GTAC 2 cut(s) 622, 773
AfiI CCNNNNNNNGG 1 cut(s) 938
AgsI TTSAA 1 cut(s) 886
AhdI GACNNNNNGTC 1 cut(s) 291
AjnI CCWGG 2 cut(s) 73, 364
AluBI AGCT 7 cut(s) 120, 130, 290, 438, 488, 554, 596
AluI AGCT 7 cut(s) 120, 130, 290, 438, 488, 554, 596
Alw21I GWGCWC 1 cut(s) 598
Alw26I GTCTC 4 cut(s) 402, 627, 711, 806
AlwI GGATC 3 cut(s) 831, 844, 949
Ama87I CYCGRG 1 cut(s) 405
AoxI GGCC 3 cut(s) 189, 431, 559
ApeKI GCWGC 4 cut(s) 120, 401, 485, 488
ApoI RAATTY 1 cut(s) 103
AspLEI GCGC 1 cut(s) 869
AspS9I GGNCC 3 cut(s) 189, 293, 431
AsuHPI GGTGA 3 cut(s) 127, 290, 962
AvaI CYCGRG 1 cut(s) 405
AvaII GGWCC 1 cut(s) 293
BamHI GGATCC 1 cut(s) 836
BanII GRGCYC 1 cut(s) 598
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 4 cut(s) 107, 388, 475, 497
BccI CCATC 2 cut(s) 233, 910
BciT130I CCWGG 2 cut(s) 75, 366
BclI TGATCA 2 cut(s) 814, 909
BcoDI GTCTC 4 cut(s) 402, 627, 711, 806
BfaI CTAG 4 cut(s) 15, 254, 681, 737
BfoI RGCGCY 1 cut(s) 870
BglII AGATCT 1 cut(s) 80
BisI GCNGC 4 cut(s) 121, 402, 486, 489
BlsI GCNGC 4 cut(s) 122, 403, 487, 490
BmcAI AGTACT 1 cut(s) 773
Bme1390I CCNGG 2 cut(s) 75, 366
Bme18I GGWCC 1 cut(s) 293
BmeRI GACNNNNNGTC 1 cut(s) 291
BmeT110I CYCGRG 1 cut(s) 405
BmgT120I GGNCC 3 cut(s) 189, 293, 431
BmiI GGNNCC 3 cut(s) 190, 295, 838
BmrFI CCNGG 2 cut(s) 75, 366
BmsI GCATC 3 cut(s) 192, 454, 652
BpiI GAAGAC 1 cut(s) 290
BpmI CTGGAG 2 cut(s) 460, 612
Bpu10I CCTNAGC 4 cut(s) 126, 527, 712, 900
BpuEI CTTGAG 1 cut(s) 540
Bsa29I ATCGAT 1 cut(s) 660
BsaI GGTCTC 2 cut(s) 627, 806
BsaJI CCNNGG 3 cut(s) 73, 74, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 938
Bse1I ACTGG 2 cut(s) 280, 870
Bse3DI GCAATG 2 cut(s) 396, 912
BseBI CCWGG 2 cut(s) 75, 366
BseCI ATCGAT 1 cut(s) 660
BseDI CCNNGG 3 cut(s) 73, 74, 345
BseGI GGATG 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 938
BseMI GCAATG 2 cut(s) 396, 912
BseMII CTCAG 2 cut(s) 726, 959
BseNI ACTGG 2 cut(s) 280, 870
BseXI GCAGC 4 cut(s) 107, 388, 475, 497
Bsh1236I CGCG 1 cut(s) 164
BshFI GGCC 3 cut(s) 191, 433, 561
BshVI ATCGAT 1 cut(s) 660
BsiHKAI GWGCWC 1 cut(s) 598
BsiHKCI CYCGRG 1 cut(s) 405
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 938
BsmAI GTCTC 4 cut(s) 402, 627, 711, 806
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 3 cut(s) 191, 433, 561
Bso31I GGTCTC 2 cut(s) 627, 806
BsoBI CYCGRG 1 cut(s) 405
Bsp1286I GDGCHC 1 cut(s) 598
Bsp1407I TGTACA 1 cut(s) 620
Bsp143I GATC 7 cut(s) 80, 165, 814, 836, 909, 941, 954
BspACI CCGC 2 cut(s) 162, 637
BspANI GGCC 3 cut(s) 191, 433, 561
BspCNI CTCAG 2 cut(s) 725, 958
BspDI ATCGAT 1 cut(s) 660
BspFNI CGCG 1 cut(s) 164
BspLI GGNNCC 3 cut(s) 190, 295, 838
BspPI GGATC 3 cut(s) 831, 844, 949
BspTNI GGTCTC 2 cut(s) 627, 806
BsrDI GCAATG 2 cut(s) 396, 912
BsrGI TGTACA 1 cut(s) 620
BsrI ACTGG 2 cut(s) 280, 870
BssECI CCNNGG 3 cut(s) 73, 74, 345
BssMI GATC 7 cut(s) 80, 165, 814, 836, 909, 941, 954
BssT1I CCWWGG 1 cut(s) 345
Bst2UI CCWGG 2 cut(s) 75, 366
Bst4CI ACNGT 3 cut(s) 142, 625, 825
Bst6I CTCTTC 1 cut(s) 454
BstAPI GCANNNNNTGC 1 cut(s) 896
BstAUI TGTACA 1 cut(s) 620
BstDEI CTNAG 9 cut(s) 126, 311, 527, 543, 712, 768, 876, 900, 945
BstF5I GGATG 1 cut(s) 239
BstFNI CGCG 1 cut(s) 164
BstH2I RGCGCY 1 cut(s) 870
BstHHI GCGC 1 cut(s) 869
BstKTI GATC 7 cut(s) 83, 168, 817, 839, 912, 944, 957
BstMAI GTCTC 4 cut(s) 402, 627, 711, 806
BstMBI GATC 7 cut(s) 80, 165, 814, 836, 909, 941, 954
BstMWI GCNNNNNNNGC 2 cut(s) 671, 896
BstNI CCWGG 2 cut(s) 75, 366
BstNSI RCATGY 1 cut(s) 363
BstSCI CCNGG 2 cut(s) 73, 364
BstUI CGCG 1 cut(s) 164
BstV1I GCAGC 4 cut(s) 107, 388, 475, 497
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 3 cut(s) 80, 836, 941
BstYI RGATCY 3 cut(s) 80, 836, 941
Bsu15I ATCGAT 1 cut(s) 660
BsuRI GGCC 3 cut(s) 191, 433, 561
BsuTUI ATCGAT 1 cut(s) 660
BtsCI GGATG 1 cut(s) 239
BtsIMutI CAGTG 3 cut(s) 138, 273, 877
CfoI GCGC 1 cut(s) 869
Cfr13I GGNCC 3 cut(s) 189, 293, 431
ClaI ATCGAT 1 cut(s) 660
Csp6I GTAC 2 cut(s) 621, 772
CviAII CATG 4 cut(s) 49, 215, 360, 577
CviQI GTAC 2 cut(s) 621, 772
DdeI CTNAG 9 cut(s) 126, 311, 527, 543, 712, 768, 876, 900, 945
DpnI GATC 7 cut(s) 82, 167, 816, 838, 911, 943, 956
DpnII GATC 7 cut(s) 80, 165, 814, 836, 909, 941, 954
DrdI GACNNNNNNGTC 1 cut(s) 224
DriI GACNNNNNGTC 1 cut(s) 291
DseDI GACNNNNNNGTC 1 cut(s) 224
Eam1104I CTCTTC 1 cut(s) 454
Eam1105I GACNNNNNGTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 454
Ecl136II GAGCTC 1 cut(s) 596
Eco130I CCWWGG 1 cut(s) 345
Eco147I AGGCCT 1 cut(s) 561
Eco24I GRGCYC 1 cut(s) 598
Eco31I GGTCTC 2 cut(s) 627, 806
Eco47I GGWCC 1 cut(s) 293
Eco53kI GAGCTC 1 cut(s) 596
Eco88I CYCGRG 1 cut(s) 405
EcoICRI GAGCTC 1 cut(s) 596
EcoO109I RGGNCCY 1 cut(s) 189
EcoRII CCWGG 2 cut(s) 73, 364
EcoT14I CCWWGG 1 cut(s) 345
EcoT38I GRGCYC 1 cut(s) 598
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 4 cut(s) 52, 218, 363, 580
FaiI YATR 7 cut(s) 35, 50, 216, 361, 578, 641, 643
FaqI GGGAC 1 cut(s) 279
FatI CATG 4 cut(s) 48, 214, 359, 576
FbaI TGATCA 2 cut(s) 814, 909
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 4 cut(s) 121, 402, 486, 489
FokI GGATG 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 598
Fsp4HI GCNGC 4 cut(s) 121, 402, 486, 489
FspBI CTAG 4 cut(s) 15, 254, 681, 737
GlaI GCGC 1 cut(s) 868
GluI GCNGC 4 cut(s) 121, 402, 486, 489
GsuI CTGGAG 2 cut(s) 460, 612
HaeII RGCGCY 1 cut(s) 870
HaeIII GGCC 3 cut(s) 191, 433, 561
HhaI GCGC 1 cut(s) 869
Hin1II CATG 4 cut(s) 52, 218, 363, 580
Hin6I GCGC 1 cut(s) 867
HinP1I GCGC 1 cut(s) 867
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 3 cut(s) 410, 421, 845
HphI GGTGA 3 cut(s) 127, 290, 962
Hpy166II GTNNAC 2 cut(s) 12, 621
Hpy188I TCNGA 2 cut(s) 632, 814
Hpy188III TCNNGA 9 cut(s) 114, 407, 591, 714, 737, 778, 818, 913, 958
Hpy8I GTNNAC 2 cut(s) 12, 621
HpyAV CCTTC 5 cut(s) 209, 215, 769, 790, 815
HpyCH4III ACNGT 3 cut(s) 142, 625, 825
HpyCH4V TGCA 4 cut(s) 485, 674, 731, 890
HpyF10VI GCNNNNNNNGC 2 cut(s) 671, 896
HpyF3I CTNAG 9 cut(s) 126, 311, 527, 543, 712, 768, 876, 900, 945
Hsp92II CATG 4 cut(s) 52, 218, 363, 580
HspAI GCGC 1 cut(s) 867
Ksp22I TGATCA 2 cut(s) 814, 909
Kzo9I GATC 7 cut(s) 80, 165, 814, 836, 909, 941, 954
LmnI GCTCC 2 cut(s) 517, 593
Lsp1109I GCAGC 4 cut(s) 107, 388, 475, 497
LweI GCATC 3 cut(s) 192, 454, 652
MaeI CTAG 4 cut(s) 15, 254, 681, 737
MaeIII GTNAC 2 cut(s) 391, 977
MalI GATC 7 cut(s) 82, 167, 816, 838, 911, 943, 956
MboI GATC 7 cut(s) 80, 165, 814, 836, 909, 941, 954
MboII GAAGA 3 cut(s) 75, 295, 471
MfeI CAATTG 1 cut(s) 691
MflI RGATCY 3 cut(s) 80, 836, 941
MhlI GDGCHC 1 cut(s) 598
MluCI AATT 4 cut(s) 103, 304, 691, 964
MlyI GAGTC 2 cut(s) 404, 839
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 8 cut(s) 202, 308, 422, 545, 709, 715, 744, 794
MseI TTAA 5 cut(s) 144, 447, 828, 855, 927
MslI CAYNNNNRTG 2 cut(s) 47, 213
MspA1I CMGCKG 2 cut(s) 290, 488
MspR9I CCNGG 2 cut(s) 75, 366
MunI CAATTG 1 cut(s) 691
MvaI CCWGG 2 cut(s) 75, 366
MvnI CGCG 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 671, 896
NdeII GATC 7 cut(s) 80, 165, 814, 836, 909, 941, 954
NlaIII CATG 4 cut(s) 52, 218, 363, 580
NlaIV GGNNCC 3 cut(s) 190, 295, 838
NspI RCATGY 1 cut(s) 363
PaeR7I CTCGAG 1 cut(s) 405
PasI CCCWGGG 1 cut(s) 74
PceI AGGCCT 1 cut(s) 561
PfeI GAWTC 1 cut(s) 421
PflFI GACNNNGTC 1 cut(s) 578
PkrI GCNGC 4 cut(s) 122, 403, 487, 490
PleI GAGTC 2 cut(s) 404, 839
PpsI GAGTC 2 cut(s) 404, 839
Psp124BI GAGCTC 1 cut(s) 598
Psp6I CCWGG 2 cut(s) 73, 364
PspGI CCWGG 2 cut(s) 73, 364
PspN4I GGNNCC 3 cut(s) 190, 295, 838
PspPI GGNCC 3 cut(s) 189, 293, 431
PsuI RGATCY 3 cut(s) 80, 836, 941
PsyI GACNNNGTC 1 cut(s) 578
PvuII CAGCTG 2 cut(s) 290, 488
RsaI GTAC 2 cut(s) 622, 773
RsaNI GTAC 2 cut(s) 621, 772
RseI CAYNNNNRTG 2 cut(s) 47, 213
SacI GAGCTC 1 cut(s) 598
SaqAI TTAA 5 cut(s) 144, 447, 828, 855, 927
SatI GCNGC 4 cut(s) 121, 402, 486, 489
Sau3AI GATC 7 cut(s) 80, 165, 814, 836, 909, 941, 954
Sau96I GGNCC 3 cut(s) 189, 293, 431
ScaI AGTACT 1 cut(s) 773
SchI GAGTC 2 cut(s) 404, 839
ScrFI CCNGG 2 cut(s) 75, 366
SduI GDGCHC 1 cut(s) 598
SfaNI GCATC 3 cut(s) 192, 454, 652
Sfr274I CTCGAG 1 cut(s) 405
SinI GGWCC 1 cut(s) 293
SlaI CTCGAG 1 cut(s) 405
SmiMI CAYNNNNRTG 2 cut(s) 47, 213
SmlI CTYRAG 2 cut(s) 405, 555
SmoI CTYRAG 2 cut(s) 405, 555
Sse9I AATT 4 cut(s) 103, 304, 691, 964
SseBI AGGCCT 1 cut(s) 561
SsiI CCGC 2 cut(s) 162, 637
SspMI CTAG 4 cut(s) 15, 254, 681, 737
SstI GAGCTC 1 cut(s) 598
StuI AGGCCT 1 cut(s) 561
StyD4I CCNGG 2 cut(s) 73, 364
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 3 cut(s) 142, 625, 825
TaqI TCGA 4 cut(s) 351, 406, 660, 762
TasI AATT 4 cut(s) 103, 304, 691, 964
TatI WGTACW 2 cut(s) 620, 771
TfiI GAWTC 1 cut(s) 421
Tru1I TTAA 5 cut(s) 144, 447, 828, 855, 927
Tru9I TTAA 5 cut(s) 144, 447, 828, 855, 927
TscAI CASTG 3 cut(s) 145, 280, 877
TseI GCWGC 4 cut(s) 120, 401, 485, 488
TspDTI ATGAA 3 cut(s) 197, 255, 657
TspGWI ACGGA 1 cut(s) 403
TspRI CASTG 3 cut(s) 145, 280, 877
Tth111I GACNNNGTC 1 cut(s) 578
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 1 cut(s) 103
XbaI TCTAGA 1 cut(s) 736
XceI RCATGY 1 cut(s) 363
XcmI CCANNNNNNNNNTGG 1 cut(s) 847
XhoI CTCGAG 1 cut(s) 405
XmiI GTMKAC 1 cut(s) 11
XspI CTAG 4 cut(s) 15, 254, 681, 737
ZrmI AGTACT 1 cut(s) 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.