pycom11g05100

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0012787
Physical Location & Seq
Forward (+)
3949256 .. 3952764
3509 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g05100.1

Sequence Viewer

Length: 1059 bp
ATGCCCAATTCAGTTCTCCATGCAACACCATATTCTCAAACCTTGTTAATTCAACTACATTTTGAATTTGAAACAATGGCTTTTAGTAATACTTTTTCATTGTGTTCCATATTGATGATCGTCACAGTCGGTGTTCTTGTGGGTTTCACTGGGAGCTCTTCTGCTCAACTCTCTACGAATTTCTATTCTAAGAGTTGTCCTAAAGTTTTTGATACAGTCAAATCTGTTGTCAAGTCTGCTGTATCTAAAGAAAAGCGCATGGGCGCTTCTCTTCTTCGCCTTCACTTTCATGACTGCTTCGTCAACGGTTGTGATGGATCTCTATTACTGGACGACACTTCTTCCTTCACCGGTGAGAAGACTGCAGGCCCGAATAACAACTCTGCAAGAGGGTTTGAGGTTGTGGACAAGATCAAGTCCCAAGTGGAAAAGGCATGCCCCGGCGTCGTTTCCTGTGCTGATATCTTAGCTATTGCTTCTCGAGATTCCGTTCAAATTCTTGGAGGACCAAGTTGGGAGGTTAAACTTGGAAGAAGGGATTCAAAGACAGCTAGCCTATCGGCTGCCAATAGTGGAGTCATCCCTCCTCCTACTGCCACCCTCAACGAGCTCGTCAACAGGTTCCGAGCTGTAGGTCTCTCTCAAAGGGACTTGGTAGCCTTATCTGGAGCTCACACAATTGGACAAGCAAGGTGTACAACTTTCAGAGCTCGCATATACAACGAGACCAACATTGATGCTTCATTTGCCAGGACCAGACAAAACACATGTCCAAGAACAGTTGGCTCCGGAGACAACAACCTTGCACCTTTAGACGTTACGACCCCAAATACCTTCGACACTGCCTACTTCAAGAACCTTGTCAACCAAAAGGGTCTCCTCCACAGTGATCAAATTTTGTTTAACAGCGGAGCCACCAATTCATTGGTTAAATCCTACAGCGGCAATGCTGAAACCTTCAATGCTGACTTTGCCAAGGCAATGATCAAGATGGGAGATAACAAGCCACTCACTGGATCTAAGGGCGAGATTAGATTGAACTGCAGGAAGCCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

353

Amino Acids

37.85

Weight (kDa)

9.12

Isoelectric Point (pI)

23.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 73 - 315 1.6e-87 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012787)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58390 AT5G58400
fragaria_vesca FvH4_3g40180
malus_domestica MD03G1059200.v1.1 MD11G1061400.v1.1
prunus_persica Prupe.6G044000_v2.0.a1 Prupe.6G044300_v2.0.a1
pyrus_communis pycom03g04760 pycom11g05100
rosa_chinensis RchiOBHm_Chr5g0072371
rosa_laevigata RLG00000036295
rosa_multiflora Rmu_sc0000737.1_g000014
rosa_roxburghii Rroxscaffold_1G00008850
rosa_rugosa Rorug05G0417600
rosa_samantha Rh5AG474200 Rh5CG518300 Rh5DG506400
rosa_wichuraiana Rw5G044030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
AccB7I CCANNNNNTGG 1 cut(s) 1013
AccIII TCCGGA 1 cut(s) 788
AciI CCGC 2 cut(s) 909, 942
AclWI GGATC 2 cut(s) 325, 1024
AcsI RAATTY 4 cut(s) 65, 178, 495, 894
AcyI GRCGYC 1 cut(s) 444
AfaI GTAC 1 cut(s) 697
AfiI CCNNNNNNNGG 1 cut(s) 1013
AflIII ACRYGT 1 cut(s) 767
AgeI ACCGGT 1 cut(s) 350
AgsI TTSAA 8 cut(s) 53, 65, 71, 494, 543, 853, 961, 1039
AjnI CCWGG 1 cut(s) 749
AluBI AGCT 7 cut(s) 156, 470, 551, 610, 629, 671, 710
AluI AGCT 7 cut(s) 156, 470, 551, 610, 629, 671, 710
Alw21I GWGCWC 4 cut(s) 158, 612, 673, 712
Alw26I GTCTC 4 cut(s) 641, 719, 786, 881
AlwI GGATC 2 cut(s) 325, 1024
Ama87I CYCGRG 1 cut(s) 480
Aor13HI TCCGGA 1 cut(s) 788
AoxI GGCC 1 cut(s) 367
ApeKI GCWGC 1 cut(s) 563
ApoI RAATTY 4 cut(s) 65, 178, 495, 894
ArsI GACNNNNNNTTYG 4 cut(s) 213, 245, 754, 786
AsiGI ACCGGT 1 cut(s) 350
Asp700I GAANNNNTTC 1 cut(s) 538
AspLEI GCGC 2 cut(s) 258, 266
AspS9I GGNCC 3 cut(s) 368, 506, 753
AsuC2I CCSGG 1 cut(s) 441
AsuHPI GGTGA 2 cut(s) 340, 365
AsuNHI GCTAGC 1 cut(s) 551
AvaI CYCGRG 1 cut(s) 480
AvaII GGWCC 2 cut(s) 506, 753
BanII GRGCYC 4 cut(s) 158, 612, 673, 712
BbsI GAAGAC 1 cut(s) 365
Bbv12I GWGCWC 4 cut(s) 158, 612, 673, 712
BbvI GCAGC 1 cut(s) 550
BccI CCATC 2 cut(s) 308, 985
BciT130I CCWGG 1 cut(s) 751
BclI TGATCA 2 cut(s) 889, 984
BcnI CCSGG 1 cut(s) 441
BcoDI GTCTC 4 cut(s) 641, 719, 786, 881
BfaI CTAG 1 cut(s) 552
BfmI CTRYAG 4 cut(s) 363, 630, 937, 1042
BfoI RGCGCY 1 cut(s) 267
BisI GCNGC 2 cut(s) 564, 943
BlsI GCNGC 2 cut(s) 565, 944
Bme1390I CCNGG 2 cut(s) 441, 751
Bme18I GGWCC 2 cut(s) 506, 753
BmeT110I CYCGRG 1 cut(s) 480
BmgT120I GGNCC 3 cut(s) 368, 506, 753
BmiI GGNNCC 3 cut(s) 623, 787, 913
BmrFI CCNGG 2 cut(s) 441, 751
BmrI ACTGGG 1 cut(s) 159
BmsI GCATC 1 cut(s) 727
BmtI GCTAGC 1 cut(s) 555
BmuI ACTGGG 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 365
BpmI CTGGAG 1 cut(s) 687
BpuMI CCSGG 1 cut(s) 441
BsaHI GRCGYC 1 cut(s) 444
BsaI GGTCTC 3 cut(s) 641, 719, 881
BsaJI CCNNGG 2 cut(s) 439, 975
BsaWI WCCGGW 2 cut(s) 350, 788
Bsc4I CCNNNNNNNGG 1 cut(s) 1013
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 3 cut(s) 154, 333, 1018
Bse3DI GCAATG 2 cut(s) 952, 987
BseAI TCCGGA 1 cut(s) 788
BseBI CCWGG 1 cut(s) 751
BseDI CCNNGG 2 cut(s) 439, 975
BseGI GGATG 1 cut(s) 579
BseLI CCNNNNNNNGG 1 cut(s) 1013
BseMI GCAATG 2 cut(s) 952, 987
BseNI ACTGG 3 cut(s) 154, 333, 1018
BseRI GAGGAG 2 cut(s) 576, 869
BseXI GCAGC 1 cut(s) 550
BshFI GGCC 1 cut(s) 369
BshTI ACCGGT 1 cut(s) 350
BsiHKAI GWGCWC 4 cut(s) 158, 612, 673, 712
BsiHKCI CYCGRG 1 cut(s) 480
BsiSI CCGG 3 cut(s) 351, 441, 789
BslFI GGGAC 2 cut(s) 403, 662
BslI CCNNNNNNNGG 1 cut(s) 1013
BsmAI GTCTC 4 cut(s) 641, 719, 786, 881
BsmFI GGGAC 2 cut(s) 403, 662
BsnI GGCC 1 cut(s) 369
Bso31I GGTCTC 3 cut(s) 641, 719, 881
BsoBI CYCGRG 1 cut(s) 480
Bsp1286I GDGCHC 4 cut(s) 158, 612, 673, 712
Bsp13I TCCGGA 1 cut(s) 788
Bsp1407I TGTACA 1 cut(s) 695
Bsp143I GATC 6 cut(s) 117, 317, 411, 889, 984, 1016
BspACI CCGC 2 cut(s) 909, 942
BspANI GGCC 1 cut(s) 369
BspEI TCCGGA 1 cut(s) 788
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 3 cut(s) 623, 787, 913
BspMAI CTGCAG 2 cut(s) 367, 1046
BspOI GCTAGC 1 cut(s) 555
BspPI GGATC 2 cut(s) 325, 1024
BspQI GCTCTTC 1 cut(s) 163
BspTNI GGTCTC 3 cut(s) 641, 719, 881
BsrDI GCAATG 2 cut(s) 952, 987
BsrFI RCCGGY 1 cut(s) 350
BsrGI TGTACA 1 cut(s) 695
BsrI ACTGG 3 cut(s) 154, 333, 1018
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 2 cut(s) 439, 975
BssMI GATC 6 cut(s) 117, 317, 411, 889, 984, 1016
BssNI GRCGYC 1 cut(s) 444
BssT1I CCWWGG 1 cut(s) 975
Bst2UI CCWGG 1 cut(s) 751
Bst4CI ACNGT 5 cut(s) 127, 217, 308, 781, 887
Bst6I CTCTTC 2 cut(s) 163, 276
BstACI GRCGYC 1 cut(s) 444
BstAUI TGTACA 1 cut(s) 695
BstC8I GCNNGC 4 cut(s) 367, 436, 553, 712
BstDEI CTNAG 3 cut(s) 189, 466, 1020
BstF5I GGATG 1 cut(s) 579
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 2 cut(s) 258, 266
BstKTI GATC 6 cut(s) 120, 320, 414, 892, 987, 1019
BstMAI GTCTC 4 cut(s) 641, 719, 786, 881
BstMBI GATC 6 cut(s) 117, 317, 411, 889, 984, 1016
BstMWI GCNNNNNNNGC 2 cut(s) 746, 971
BstNI CCWGG 1 cut(s) 751
BstNSI RCATGY 2 cut(s) 438, 771
BstSCI CCNGG 2 cut(s) 439, 749
BstSFI CTRYAG 4 cut(s) 363, 630, 937, 1042
BstV1I GCAGC 1 cut(s) 550
BstV2I GAAGAC 1 cut(s) 365
BstX2I RGATCY 2 cut(s) 317, 1016
BstXI CCANNNNNNTGG 1 cut(s) 925
BstYI RGATCY 2 cut(s) 317, 1016
BsuRI GGCC 1 cut(s) 369
BtsCI GGATG 1 cut(s) 579
BtsI GCAGTG 1 cut(s) 840
BtsIMutI CAGTG 4 cut(s) 147, 840, 892, 1011
Cac8I GCNNGC 4 cut(s) 367, 436, 553, 712
CciI TCATGA 1 cut(s) 289
CfoI GCGC 2 cut(s) 258, 266
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 3 cut(s) 368, 506, 753
CseI GACGC 1 cut(s) 433
Csp6I GTAC 1 cut(s) 696
CspAI ACCGGT 1 cut(s) 350
CviAII CATG 5 cut(s) 20, 259, 290, 435, 768
CviQI GTAC 1 cut(s) 696
DdeI CTNAG 3 cut(s) 189, 466, 1020
DpnI GATC 6 cut(s) 119, 319, 413, 891, 986, 1018
DpnII GATC 6 cut(s) 117, 317, 411, 889, 984, 1016
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
Eam1104I CTCTTC 2 cut(s) 163, 276
EarI CTCTTC 2 cut(s) 163, 276
Ecl136II GAGCTC 4 cut(s) 156, 610, 671, 710
Eco130I CCWWGG 1 cut(s) 975
Eco24I GRGCYC 4 cut(s) 158, 612, 673, 712
Eco31I GGTCTC 3 cut(s) 641, 719, 881
Eco32I GATATC 1 cut(s) 463
Eco47I GGWCC 2 cut(s) 506, 753
Eco53kI GAGCTC 4 cut(s) 156, 610, 671, 710
Eco88I CYCGRG 1 cut(s) 480
EcoICRI GAGCTC 4 cut(s) 156, 610, 671, 710
EcoRII CCWGG 1 cut(s) 749
EcoRV GATATC 1 cut(s) 463
EcoT14I CCWWGG 1 cut(s) 975
EcoT38I GRGCYC 4 cut(s) 158, 612, 673, 712
ErhI CCWWGG 1 cut(s) 975
FaeI CATG 5 cut(s) 23, 262, 293, 438, 771
FaiI YATR 9 cut(s) 21, 31, 110, 260, 291, 436, 716, 718, 769
FaqI GGGAC 2 cut(s) 403, 662
FatI CATG 5 cut(s) 19, 258, 289, 434, 767
FbaI TGATCA 2 cut(s) 889, 984
Fnu4HI GCNGC 2 cut(s) 564, 943
FokI GGATG 1 cut(s) 566
FriOI GRGCYC 4 cut(s) 158, 612, 673, 712
Fsp4HI GCNGC 2 cut(s) 564, 943
FspBI CTAG 1 cut(s) 552
GlaI GCGC 2 cut(s) 257, 265
GluI GCNGC 2 cut(s) 564, 943
GsuI CTGGAG 1 cut(s) 687
HaeII RGCGCY 1 cut(s) 267
HaeIII GGCC 1 cut(s) 369
HapII CCGG 3 cut(s) 351, 441, 789
HgaI GACGC 1 cut(s) 433
HhaI GCGC 2 cut(s) 258, 266
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 5 cut(s) 23, 262, 293, 438, 771
Hin6I GCGC 2 cut(s) 256, 264
HinP1I GCGC 2 cut(s) 256, 264
HincII GTYRAC 3 cut(s) 304, 616, 865
HindII GTYRAC 3 cut(s) 304, 616, 865
HinfI GANTC 3 cut(s) 485, 539, 576
HpaII CCGG 3 cut(s) 351, 441, 789
HphI GGTGA 2 cut(s) 340, 365
Hpy166II GTNNAC 5 cut(s) 304, 406, 616, 696, 865
Hpy188I TCNGA 2 cut(s) 626, 707
Hpy188III TCNNGA 7 cut(s) 290, 480, 482, 666, 789, 853, 988
Hpy8I GTNNAC 5 cut(s) 304, 406, 616, 696, 865
Hpy99I CGWCG 1 cut(s) 449
HpyAV CCTTC 5 cut(s) 290, 355, 528, 844, 967
HpyCH4III ACNGT 5 cut(s) 127, 217, 308, 781, 887
HpyCH4IV ACGT 1 cut(s) 816
HpyCH4V TGCA 5 cut(s) 23, 365, 386, 806, 1044
HpyF10VI GCNNNNNNNGC 2 cut(s) 746, 971
HpyF3I CTNAG 3 cut(s) 189, 466, 1020
HpySE526I ACGT 1 cut(s) 816
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 5 cut(s) 23, 262, 293, 438, 771
HspAI GCGC 2 cut(s) 256, 264
Kpn2I TCCGGA 1 cut(s) 788
Ksp22I TGATCA 2 cut(s) 889, 984
Kzo9I GATC 6 cut(s) 117, 317, 411, 889, 984, 1016
LguI GCTCTTC 1 cut(s) 163
LmnI GCTCC 4 cut(s) 153, 668, 791, 911
Lsp1109I GCAGC 1 cut(s) 550
LweI GCATC 1 cut(s) 727
MaeI CTAG 1 cut(s) 552
MaeII ACGT 1 cut(s) 816
MaeIII GTNAC 2 cut(s) 121, 817
MalI GATC 6 cut(s) 119, 319, 413, 891, 986, 1018
MboI GATC 6 cut(s) 117, 317, 411, 889, 984, 1016
MboII GAAGA 6 cut(s) 150, 263, 266, 333, 370, 543
MfeI CAATTG 1 cut(s) 678
MflI RGATCY 2 cut(s) 317, 1016
MhlI GDGCHC 4 cut(s) 158, 612, 673, 712
MluCI AATT 9 cut(s) 7, 48, 65, 178, 495, 678, 894, 919, 1054
MlyI GAGTC 1 cut(s) 585
MnlI CCTC 8 cut(s) 383, 391, 497, 511, 594, 597, 611, 890
MroI TCCGGA 1 cut(s) 788
MroXI GAANNNNTTC 1 cut(s) 538
MseI TTAA 5 cut(s) 47, 522, 903, 930, 1057
MslI CAYNNNNRTG 2 cut(s) 113, 288
MspA1I CMGCKG 2 cut(s) 909, 942
MspI CCGG 3 cut(s) 351, 441, 789
MspR9I CCNGG 2 cut(s) 441, 751
MunI CAATTG 1 cut(s) 678
MvaI CCWGG 1 cut(s) 751
MwoI GCNNNNNNNGC 2 cut(s) 746, 971
NciI CCSGG 1 cut(s) 441
NdeII GATC 6 cut(s) 117, 317, 411, 889, 984, 1016
NheI GCTAGC 1 cut(s) 551
NlaIII CATG 5 cut(s) 23, 262, 293, 438, 771
NlaIV GGNNCC 3 cut(s) 623, 787, 913
NmuCI GTSAC 1 cut(s) 121
NspI RCATGY 2 cut(s) 438, 771
PaeI GCATGC 1 cut(s) 438
PaeR7I CTCGAG 1 cut(s) 480
PagI TCATGA 1 cut(s) 289
PciI ACATGT 1 cut(s) 767
PciSI GCTCTTC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 538
PfeI GAWTC 2 cut(s) 485, 539
PflMI CCANNNNNTGG 1 cut(s) 1013
PinAI ACCGGT 1 cut(s) 350
PkrI GCNGC 2 cut(s) 565, 944
PleI GAGTC 1 cut(s) 584
PpsI GAGTC 1 cut(s) 584
PscI ACATGT 1 cut(s) 767
Psp124BI GAGCTC 4 cut(s) 158, 612, 673, 712
Psp6I CCWGG 1 cut(s) 749
PspGI CCWGG 1 cut(s) 749
PspN4I GGNNCC 3 cut(s) 623, 787, 913
PspPI GGNCC 3 cut(s) 368, 506, 753
PstI CTGCAG 2 cut(s) 367, 1046
PsuI RGATCY 2 cut(s) 317, 1016
RsaI GTAC 1 cut(s) 697
RsaNI GTAC 1 cut(s) 696
RseI CAYNNNNRTG 2 cut(s) 113, 288
SacI GAGCTC 4 cut(s) 158, 612, 673, 712
SapI GCTCTTC 1 cut(s) 163
SaqAI TTAA 5 cut(s) 47, 522, 903, 930, 1057
SatI GCNGC 2 cut(s) 564, 943
Sau3AI GATC 6 cut(s) 117, 317, 411, 889, 984, 1016
Sau96I GGNCC 3 cut(s) 368, 506, 753
SchI GAGTC 1 cut(s) 585
ScrFI CCNGG 2 cut(s) 441, 751
SduI GDGCHC 4 cut(s) 158, 612, 673, 712
SfaNI GCATC 1 cut(s) 727
SfcI CTRYAG 4 cut(s) 363, 630, 937, 1042
Sfr274I CTCGAG 1 cut(s) 480
SgrAI CRCCGGYG 1 cut(s) 350
SinI GGWCC 2 cut(s) 506, 753
SlaI CTCGAG 1 cut(s) 480
SmiMI CAYNNNNRTG 2 cut(s) 113, 288
SmlI CTYRAG 1 cut(s) 480
SmoI CTYRAG 1 cut(s) 480
SphI GCATGC 1 cut(s) 438
Sse9I AATT 9 cut(s) 7, 48, 65, 178, 495, 678, 894, 919, 1054
SsiI CCGC 2 cut(s) 909, 942
SspMI CTAG 1 cut(s) 552
SstI GAGCTC 4 cut(s) 158, 612, 673, 712
StyD4I CCNGG 2 cut(s) 439, 749
StyI CCWWGG 1 cut(s) 975
TaaI ACNGT 5 cut(s) 127, 217, 308, 781, 887
TaiI ACGT 1 cut(s) 819
TaqI TCGA 2 cut(s) 481, 837
TasI AATT 9 cut(s) 7, 48, 65, 178, 495, 678, 894, 919, 1054
TatI WGTACW 1 cut(s) 695
TauI GCSGC 1 cut(s) 945
TfiI GAWTC 2 cut(s) 485, 539
Tru1I TTAA 5 cut(s) 47, 522, 903, 930, 1057
Tru9I TTAA 5 cut(s) 47, 522, 903, 930, 1057
TscAI CASTG 4 cut(s) 154, 847, 892, 1018
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 1 cut(s) 563
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 4 cut(s) 87, 278, 732, 912
TspGWI ACGGA 1 cut(s) 478
TspRI CASTG 4 cut(s) 154, 847, 892, 1018
Van91I CCANNNNNTGG 1 cut(s) 1013
VpaK11BI GGWCC 2 cut(s) 506, 753
XapI RAATTY 4 cut(s) 65, 178, 495, 894
XceI RCATGY 2 cut(s) 438, 771
XcmI CCANNNNNNNNNTGG 1 cut(s) 922
XhoI CTCGAG 1 cut(s) 480
XmnI GAANNNNTTC 1 cut(s) 538
XspI CTAG 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.