RchiOBHm_Chr5g0072371

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0012787
Physical Location & Seq
Forward (+)
78297511 .. 78300766
3256 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34734

Sequence Viewer

Length: 984 bp
ATGGCTTCATCTACAAGATTTTCTTTCTGTTCCGTAGTGGTCATTGTCACTTTGGGTATTCTTGCTGGTTTCACAGGGAGATCTTCTGCTCAACTCTCAACGAATTTCTATTCGGGAAGCTGCCCTAAGGTTTTCAGCACTGTCAAGTCCGTTGTACAGTCCGCGATCTCCAAGGAAAATCGCATGGGGGCTTCTCTCCTTCGCCTTCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGGTCTGTACTCCTAGACGACACTTCTTCTTTCACTGGTGAGAAGACAGCAGGTCCCAACAATAATTCAATTAGGGGATTTGAAGTCATTGATAAGATAAAAACCCGGGTCGAAAAAGCATGCCCCGGCGTCGTTTCGTGTGCTGATATCCTTACCATTGCCGCTCGAGACTCCGTTGTGATTCTTGGAGGGCCAAGCTGGAATGTTAAACTTGGAAGAAGAGATGCCAAGACTACAAGCCTTGCTGCTGCCAATAGTGGTGTCATCCCTCCTCCCACATCTACCCTAAGCAACCTCATCACTAGGTTCCAAGCTGTAGGCCTCTCTACAAGAGACATGGTTGCTTTATCTGGAGCTCACACAATTGGGAAAGCAAGGTGTACAAGTTTCAGAACACGCATATACAACGAAACCAACATCGATGCTTCATTTGCAAAGACCAGGCAGAACAGTTGCCCATCAACCACTGGCTCAGGAGACAACAACCTTGCACCTCTTGACACTCAAACTCCAAATAGCTTCGACCCTAAATACTTCCAGAACCTCATCAACAAGAAGGGTCTCCTCCACTCTGATCAAATACTGTTCAATGGTGGATCCACAGACTCATTGGTTAAAACATACAGCGCCAGTGCAAATACGTTCAATTCTGACTTTGTTAAGGCAATGATCAAGATGGGAGATAATAAACCACTCACTGGGTCTCGGGGTGAGATTAGAAAAAACTGTAGGAAGCCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

327

Amino Acids

34.92

Weight (kDa)

9.59

Isoelectric Point (pI)

28.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 48 - 290 1.1e-88 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012787)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58390 AT5G58400
fragaria_vesca FvH4_3g40180
malus_domestica MD03G1059200.v1.1 MD11G1061400.v1.1
prunus_persica Prupe.6G044000_v2.0.a1 Prupe.6G044300_v2.0.a1
pyrus_communis pycom03g04760 pycom11g05100
rosa_chinensis RchiOBHm_Chr5g0072371
rosa_laevigata RLG00000036295
rosa_multiflora Rmu_sc0000737.1_g000014
rosa_roxburghii Rroxscaffold_1G00008850
rosa_rugosa Rorug05G0417600
rosa_samantha Rh5AG474200 Rh5CG518300 Rh5DG506400
rosa_wichuraiana Rw5G044030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
Acc36I ACCTGC 1 cut(s) 281
AccB7I CCANNNNNTGG 1 cut(s) 938
AccBSI CCGCTC 1 cut(s) 404
AccII CGCG 1 cut(s) 164
AciI CCGC 2 cut(s) 162, 402
AclWI GGATC 2 cut(s) 831, 844
AcsI RAATTY 1 cut(s) 103
AcyI GRCGYC 1 cut(s) 369
AfaI GTAC 3 cut(s) 156, 249, 622
AfiI CCNNNNNNNGG 1 cut(s) 938
AgsI TTSAA 4 cut(s) 309, 323, 829, 886
AhdI GACNNNNNGTC 1 cut(s) 291
AjnI CCWGG 1 cut(s) 680
AluBI AGCT 5 cut(s) 120, 438, 554, 596, 759
AluI AGCT 5 cut(s) 120, 438, 554, 596, 759
Alw21I GWGCWC 1 cut(s) 598
Alw26I GTCTC 5 cut(s) 402, 567, 711, 806, 948
AlwI GGATC 2 cut(s) 831, 844
Ama87I CYCGRG 3 cut(s) 345, 405, 945
AoxI GGCC 2 cut(s) 431, 559
ApeKI GCWGC 3 cut(s) 120, 485, 488
ApoI RAATTY 1 cut(s) 103
AspLEI GCGC 1 cut(s) 869
AspS9I GGNCC 2 cut(s) 293, 431
AsuC2I CCSGG 3 cut(s) 346, 347, 366
AsuHPI GGTGA 2 cut(s) 290, 962
AvaI CYCGRG 3 cut(s) 345, 405, 945
AvaII GGWCC 1 cut(s) 293
AxyI CCTNAGG 1 cut(s) 126
BamHI GGATCC 1 cut(s) 836
BanII GRGCYC 1 cut(s) 598
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 3 cut(s) 107, 472, 475
BccI CCATC 3 cut(s) 233, 706, 910
BciT130I CCWGG 1 cut(s) 682
BclI TGATCA 2 cut(s) 814, 909
BcnI CCSGG 3 cut(s) 346, 347, 366
BcoDI GTCTC 5 cut(s) 402, 567, 711, 806, 948
BfaI CTAG 2 cut(s) 254, 543
BfmI CTRYAG 2 cut(s) 555, 967
BfoI RGCGCY 1 cut(s) 870
BfuAI ACCTGC 1 cut(s) 281
BglII AGATCT 1 cut(s) 80
BisI GCNGC 4 cut(s) 121, 402, 486, 489
BlsI GCNGC 4 cut(s) 122, 403, 487, 490
Bme1390I CCNGG 4 cut(s) 346, 347, 366, 682
Bme18I GGWCC 1 cut(s) 293
BmeRI GACNNNNNGTC 1 cut(s) 291
BmeT110I CYCGRG 3 cut(s) 345, 405, 945
BmgT120I GGNCC 2 cut(s) 293, 431
BmiI GGNNCC 3 cut(s) 295, 548, 838
BmrFI CCNGG 4 cut(s) 346, 347, 366, 682
BmrI ACTGGG 1 cut(s) 948
BmsI GCATC 2 cut(s) 454, 652
BmuI ACTGGG 1 cut(s) 948
BpiI GAAGAC 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 612
Bpu10I CCTNAGC 2 cut(s) 527, 712
BpuMI CCSGG 3 cut(s) 346, 347, 366
Bsa29I ATCGAT 1 cut(s) 660
BsaHI GRCGYC 1 cut(s) 369
BsaI GGTCTC 2 cut(s) 806, 948
BsaJI CCNNGG 3 cut(s) 171, 345, 364
BsaXI ACNNNNNCTCC 2 cut(s) 733, 763
Bsc4I CCNNNNNNNGG 1 cut(s) 938
Bse1I ACTGG 4 cut(s) 280, 712, 870, 943
Bse21I CCTNAGG 1 cut(s) 126
Bse3DI GCAATG 2 cut(s) 396, 912
BseBI CCWGG 1 cut(s) 682
BseCI ATCGAT 1 cut(s) 660
BseDI CCNNGG 3 cut(s) 171, 345, 364
BseGI GGATG 1 cut(s) 504
BseLI CCNNNNNNNGG 1 cut(s) 938
BseMI GCAATG 2 cut(s) 396, 912
BseMII CTCAG 1 cut(s) 726
BseNI ACTGG 4 cut(s) 280, 712, 870, 943
BseRI GAGGAG 2 cut(s) 501, 794
BseXI GCAGC 3 cut(s) 107, 472, 475
Bsh1236I CGCG 1 cut(s) 164
BshFI GGCC 2 cut(s) 433, 561
BshVI ATCGAT 1 cut(s) 660
BsiHKAI GWGCWC 1 cut(s) 598
BsiHKCI CYCGRG 3 cut(s) 345, 405, 945
BsiSI CCGG 2 cut(s) 346, 366
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 938
BsmAI GTCTC 5 cut(s) 402, 567, 711, 806, 948
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 2 cut(s) 433, 561
Bso31I GGTCTC 2 cut(s) 806, 948
BsoBI CYCGRG 3 cut(s) 345, 405, 945
Bsp1286I GDGCHC 1 cut(s) 598
Bsp1407I TGTACA 2 cut(s) 154, 620
Bsp143I GATC 5 cut(s) 80, 165, 814, 836, 909
BspACI CCGC 2 cut(s) 162, 402
BspANI GGCC 2 cut(s) 433, 561
BspCNI CTCAG 1 cut(s) 725
BspDI ATCGAT 1 cut(s) 660
BspFNI CGCG 1 cut(s) 164
BspLI GGNNCC 3 cut(s) 295, 548, 838
BspMI ACCTGC 1 cut(s) 281
BspPI GGATC 2 cut(s) 831, 844
BspTNI GGTCTC 2 cut(s) 806, 948
BsrBI CCGCTC 1 cut(s) 404
BsrDI GCAATG 2 cut(s) 396, 912
BsrGI TGTACA 2 cut(s) 154, 620
BsrI ACTGG 4 cut(s) 280, 712, 870, 943
BssECI CCNNGG 3 cut(s) 171, 345, 364
BssMI GATC 5 cut(s) 80, 165, 814, 836, 909
BssNI GRCGYC 1 cut(s) 369
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 682
Bst4CI ACNGT 5 cut(s) 142, 159, 692, 825, 968
Bst6I CTCTTC 1 cut(s) 454
BstACI GRCGYC 1 cut(s) 369
BstAUI TGTACA 2 cut(s) 154, 620
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 3 cut(s) 126, 527, 712
BstF5I GGATG 1 cut(s) 504
BstFNI CGCG 1 cut(s) 164
BstH2I RGCGCY 1 cut(s) 870
BstHHI GCGC 1 cut(s) 869
BstKTI GATC 5 cut(s) 83, 168, 817, 839, 912
BstMAI GTCTC 5 cut(s) 402, 567, 711, 806, 948
BstMBI GATC 5 cut(s) 80, 165, 814, 836, 909
BstMWI GCNNNNNNNGC 1 cut(s) 671
BstNI CCWGG 1 cut(s) 682
BstNSI RCATGY 1 cut(s) 363
BstSCI CCNGG 4 cut(s) 344, 345, 364, 680
BstSFI CTRYAG 2 cut(s) 555, 967
BstUI CGCG 1 cut(s) 164
BstV1I GCAGC 3 cut(s) 107, 472, 475
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 2 cut(s) 80, 836
BstYI RGATCY 2 cut(s) 80, 836
Bsu15I ATCGAT 1 cut(s) 660
Bsu36I CCTNAGG 1 cut(s) 126
BsuRI GGCC 2 cut(s) 433, 561
BsuTUI ATCGAT 1 cut(s) 660
BtsCI GGATG 1 cut(s) 504
BtsIMutI CAGTG 5 cut(s) 138, 273, 705, 877, 936
BveI ACCTGC 1 cut(s) 281
Cac8I GCNNGC 1 cut(s) 361
CfoI GCGC 1 cut(s) 869
Cfr13I GGNCC 2 cut(s) 293, 431
Cfr9I CCCGGG 1 cut(s) 345
ClaI ATCGAT 1 cut(s) 660
CseI GACGC 1 cut(s) 358
Csp6I GTAC 3 cut(s) 155, 248, 621
CviAII CATG 4 cut(s) 184, 215, 360, 577
CviQI GTAC 3 cut(s) 155, 248, 621
DdeI CTNAG 3 cut(s) 126, 527, 712
DpnI GATC 5 cut(s) 82, 167, 816, 838, 911
DpnII GATC 5 cut(s) 80, 165, 814, 836, 909
DrdI GACNNNNNNGTC 1 cut(s) 224
DriI GACNNNNNGTC 1 cut(s) 291
DseDI GACNNNNNNGTC 1 cut(s) 224
Eam1104I CTCTTC 1 cut(s) 454
Eam1105I GACNNNNNGTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 454
Ecl136II GAGCTC 1 cut(s) 596
Eco130I CCWWGG 1 cut(s) 171
Eco147I AGGCCT 1 cut(s) 561
Eco24I GRGCYC 1 cut(s) 598
Eco31I GGTCTC 2 cut(s) 806, 948
Eco32I GATATC 1 cut(s) 388
Eco47I GGWCC 1 cut(s) 293
Eco53kI GAGCTC 1 cut(s) 596
Eco81I CCTNAGG 1 cut(s) 126
Eco88I CYCGRG 3 cut(s) 345, 405, 945
EcoICRI GAGCTC 1 cut(s) 596
EcoO109I RGGNCCY 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 680
EcoRV GATATC 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 598
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 4 cut(s) 187, 218, 363, 580
FaiI YATR 7 cut(s) 185, 216, 361, 578, 641, 643, 862
FalI AAGNNNNNCTT 2 cut(s) 7, 39
FaqI GGGAC 1 cut(s) 279
FatI CATG 4 cut(s) 183, 214, 359, 576
FbaI TGATCA 2 cut(s) 814, 909
Fnu4HI GCNGC 4 cut(s) 121, 402, 486, 489
FokI GGATG 1 cut(s) 491
FriOI GRGCYC 1 cut(s) 598
Fsp4HI GCNGC 4 cut(s) 121, 402, 486, 489
FspBI CTAG 2 cut(s) 254, 543
GlaI GCGC 1 cut(s) 868
GluI GCNGC 4 cut(s) 121, 402, 486, 489
GsuI CTGGAG 1 cut(s) 612
HaeII RGCGCY 1 cut(s) 870
HaeIII GGCC 2 cut(s) 433, 561
HapII CCGG 2 cut(s) 346, 366
HgaI GACGC 1 cut(s) 358
HhaI GCGC 1 cut(s) 869
Hin1I GRCGYC 1 cut(s) 369
Hin1II CATG 4 cut(s) 187, 218, 363, 580
Hin6I GCGC 1 cut(s) 867
HinP1I GCGC 1 cut(s) 867
HinfI GANTC 3 cut(s) 410, 421, 845
HpaII CCGG 2 cut(s) 346, 366
HphI GGTGA 2 cut(s) 290, 962
Hpy166II GTNNAC 1 cut(s) 621
Hpy188I TCNGA 3 cut(s) 632, 814, 892
Hpy188III TCNNGA 7 cut(s) 114, 407, 591, 714, 737, 778, 913
Hpy8I GTNNAC 1 cut(s) 621
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 3 cut(s) 209, 215, 790
HpyCH4III ACNGT 5 cut(s) 142, 159, 692, 825, 968
HpyCH4IV ACGT 1 cut(s) 881
HpyCH4V TGCA 3 cut(s) 674, 731, 875
HpyF10VI GCNNNNNNNGC 1 cut(s) 671
HpyF3I CTNAG 3 cut(s) 126, 527, 712
HpySE526I ACGT 1 cut(s) 881
Hsp92I GRCGYC 1 cut(s) 369
Hsp92II CATG 4 cut(s) 187, 218, 363, 580
HspAI GCGC 1 cut(s) 867
Ksp22I TGATCA 2 cut(s) 814, 909
Kzo9I GATC 5 cut(s) 80, 165, 814, 836, 909
LmnI GCTCC 1 cut(s) 593
Lsp1109I GCAGC 3 cut(s) 107, 472, 475
LweI GCATC 2 cut(s) 454, 652
MaeI CTAG 2 cut(s) 254, 543
MaeII ACGT 1 cut(s) 881
MaeIII GTNAC 1 cut(s) 46
MalI GATC 5 cut(s) 82, 167, 816, 838, 911
MbiI CCGCTC 1 cut(s) 404
MboI GATC 5 cut(s) 80, 165, 814, 836, 909
MboII GAAGA 5 cut(s) 75, 258, 295, 468, 471
MfeI CAATTG 1 cut(s) 603
MflI RGATCY 2 cut(s) 80, 836
MhlI GDGCHC 1 cut(s) 598
MluCI AATT 6 cut(s) 103, 304, 309, 603, 886, 979
MlyI GAGTC 2 cut(s) 404, 839
MnlI CCTC 8 cut(s) 422, 519, 522, 545, 572, 744, 794, 815
MseI TTAA 4 cut(s) 447, 855, 900, 982
MslI CAYNNNNRTG 1 cut(s) 213
MspI CCGG 2 cut(s) 346, 366
MspR9I CCNGG 4 cut(s) 346, 347, 366, 682
MunI CAATTG 1 cut(s) 603
MvaI CCWGG 1 cut(s) 682
MvnI CGCG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 671
NciI CCSGG 3 cut(s) 346, 347, 366
NdeII GATC 5 cut(s) 80, 165, 814, 836, 909
NlaIII CATG 4 cut(s) 187, 218, 363, 580
NlaIV GGNNCC 3 cut(s) 295, 548, 838
NmuCI GTSAC 1 cut(s) 46
NspI RCATGY 1 cut(s) 363
PaeI GCATGC 1 cut(s) 363
PaeR7I CTCGAG 1 cut(s) 405
PceI AGGCCT 1 cut(s) 561
PfeI GAWTC 1 cut(s) 421
PflMI CCANNNNNTGG 1 cut(s) 938
PkrI GCNGC 4 cut(s) 122, 403, 487, 490
PleI GAGTC 2 cut(s) 404, 839
PpsI GAGTC 2 cut(s) 404, 839
PpuMI RGGWCCY 1 cut(s) 293
Psp124BI GAGCTC 1 cut(s) 598
Psp5II RGGWCCY 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 680
PspGI CCWGG 1 cut(s) 680
PspN4I GGNNCC 3 cut(s) 295, 548, 838
PspPI GGNCC 2 cut(s) 293, 431
PspPPI RGGWCCY 1 cut(s) 293
PsuI RGATCY 2 cut(s) 80, 836
RsaI GTAC 3 cut(s) 156, 249, 622
RsaNI GTAC 3 cut(s) 155, 248, 621
RseI CAYNNNNRTG 1 cut(s) 213
SacI GAGCTC 1 cut(s) 598
SaqAI TTAA 4 cut(s) 447, 855, 900, 982
SatI GCNGC 4 cut(s) 121, 402, 486, 489
Sau3AI GATC 5 cut(s) 80, 165, 814, 836, 909
Sau96I GGNCC 2 cut(s) 293, 431
SchI GAGTC 2 cut(s) 404, 839
ScrFI CCNGG 4 cut(s) 346, 347, 366, 682
SduI GDGCHC 1 cut(s) 598
SfaNI GCATC 2 cut(s) 454, 652
SfcI CTRYAG 2 cut(s) 555, 967
Sfr274I CTCGAG 1 cut(s) 405
SinI GGWCC 1 cut(s) 293
SlaI CTCGAG 1 cut(s) 405
SmaI CCCGGG 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
SphI GCATGC 1 cut(s) 363
Sse9I AATT 6 cut(s) 103, 304, 309, 603, 886, 979
SseBI AGGCCT 1 cut(s) 561
SsiI CCGC 2 cut(s) 162, 402
SspMI CTAG 2 cut(s) 254, 543
SstI GAGCTC 1 cut(s) 598
StuI AGGCCT 1 cut(s) 561
StyD4I CCNGG 4 cut(s) 344, 345, 364, 680
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 5 cut(s) 142, 159, 692, 825, 968
TaiI ACGT 1 cut(s) 884
TaqI TCGA 4 cut(s) 351, 406, 660, 762
TasI AATT 6 cut(s) 103, 304, 309, 603, 886, 979
TatI WGTACW 3 cut(s) 154, 247, 620
TauI GCSGC 1 cut(s) 404
TfiI GAWTC 1 cut(s) 421
Tru1I TTAA 4 cut(s) 447, 855, 900, 982
Tru9I TTAA 4 cut(s) 447, 855, 900, 982
TscAI CASTG 5 cut(s) 145, 280, 712, 877, 943
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 3 cut(s) 120, 485, 488
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 657
TspGWI ACGGA 3 cut(s) 22, 139, 403
TspMI CCCGGG 1 cut(s) 345
TspRI CASTG 5 cut(s) 145, 280, 712, 877, 943
Van91I CCANNNNNTGG 1 cut(s) 938
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 1 cut(s) 103
XceI RCATGY 1 cut(s) 363
XcmI CCANNNNNNNNNTGG 1 cut(s) 847
XhoI CTCGAG 1 cut(s) 405
XmaI CCCGGG 1 cut(s) 345
XspI CTAG 2 cut(s) 254, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.