AT5G58400

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012787
Physical Location & Seq
Reverse (-)
23605189 .. 23607045
1857 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58400.1

Sequence Viewer

Length: 978 bp
ATGGAGTGCTATGAGCAGAGTCGTCAGAGAGCTGCGTTCGTTGTGCTGTTGTTTATCGTTATGTTGGGATCCCAGGCACAGGCCCAACTACGCACTGACTTCTATTCGGACAGCTGTCCATCACTGCTCCCTACGGTGAGGCGGGTGGTGCAGCGAGAGGTGGCCAAAGAGCGTCGGATAGCTGCTTCCCTCCTCCGACTATTCTTCCATGATTGCTTCGTCAACGGCTGTGATGCGTCAATATTATTGGATGATACACGTTCATTCCTCGGAGAAAAGACGGCTGGACCTAACAATAATTCCGTTCGAGGATATGAAGTCATCGACGCAATCAAATCAAGGGTTGAGAGACTCTGCCCAGGCGTGGTGTCATGCGCTGACATCCTGGCAATCACGGCTCGGGACTCGGTCCTTCTAATGGGTGGCCGCGGCTGGAGCGTAAAACTAGGGAGACGTGATTCTATCACGGCGAGCTTCTCCACTGCTAACTCCGGCGTCCTGCCACCTCCAACCTCTACTCTTGATAACCTTATTAACCTTTTCCGAGCAAACGGTTTATCCCCACGCGACATGGTGGCGCTCTCCGGGGCTCACACCATTGGGCAAGCCAGGTGCGTCACCTTCAGGAGCCGGATATATAACTCAACAAACATCGACCTTTCATTTGCCTTATCCAGACGGAGGAGCTGCCCTGCGGCAACTGGCTCCGGCGATAACAACGCCGCCATTCTCGATCTCCGCACACCTGAAAAGTTCGACGGCAGCTACTTCATGCAGCTTGTCAACCACAGGGGACTTCTCACATCAGATCAGGTCTTGTTCAACGGAGGTTCCACCGACTCGATCGTCGTATCCTACAGCCGGAGTGTCCAAGCATTCTACAGAGATTTTGTAGCGGCGATGATAAAAATGGGCGACATCAGCCCACTCACCGGGTCCAATGGACAGATCCGTCGCAGCTGTCGCAGGCCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

325

Amino Acids

35.63

Weight (kDa)

9.49

Isoelectric Point (pI)

52.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 288 1.1e-79 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012787)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58390 AT5G58400
fragaria_vesca FvH4_3g40180
malus_domestica MD03G1059200.v1.1 MD11G1061400.v1.1
prunus_persica Prupe.6G044000_v2.0.a1 Prupe.6G044300_v2.0.a1
pyrus_communis pycom03g04760 pycom11g05100
rosa_chinensis RchiOBHm_Chr5g0072371
rosa_laevigata RLG00000036295
rosa_multiflora Rmu_sc0000737.1_g000014
rosa_roxburghii Rroxscaffold_1G00008850
rosa_rugosa Rorug05G0417600
rosa_samantha Rh5AG474200 Rh5CG518300 Rh5DG506400
rosa_wichuraiana Rw5G044030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 845, 951
AccII CGCG 2 cut(s) 429, 567
AciI CCGC 7 cut(s) 142, 427, 429, 695, 723, 739, 896
AclWI GGATC 3 cut(s) 63, 76, 943
AcoI YGGCCR 2 cut(s) 162, 424
AcuI CTGAAG 1 cut(s) 607
AcyI GRCGYC 1 cut(s) 495
AfiI CCNNNNNNNGG 6 cut(s) 79, 364, 418, 681, 861, 932
AflIII ACRYGT 1 cut(s) 257
AgsI TTSAA 1 cut(s) 823
AjiI CACGTC 1 cut(s) 455
AjnI CCWGG 4 cut(s) 72, 358, 384, 608
AluBI AGCT 8 cut(s) 32, 114, 182, 474, 687, 765, 778, 960
AluI AGCT 8 cut(s) 32, 114, 182, 474, 687, 765, 778, 960
Alw26I GTCTC 2 cut(s) 343, 445
AlwI GGATC 3 cut(s) 63, 76, 943
Ama87I CYCGRG 1 cut(s) 399
AoxI GGCC 4 cut(s) 81, 162, 424, 968
ApeKI GCWGC 7 cut(s) 32, 151, 182, 687, 762, 775, 957
ArsI GACNNNNNNTTYG 2 cut(s) 647, 679
AspLEI GCGC 2 cut(s) 377, 580
AspS9I GGNCC 5 cut(s) 82, 287, 409, 936, 969
AsuC2I CCSGG 2 cut(s) 586, 934
AsuHPI GGTGA 3 cut(s) 148, 610, 922
AvaI CYCGRG 1 cut(s) 399
AvaII GGWCC 3 cut(s) 287, 409, 936
BalI TGGCCA 1 cut(s) 164
BamHI GGATCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 592
BbvI GCAGC 7 cut(s) 19, 163, 169, 674, 774, 787, 969
BccI CCATC 1 cut(s) 127
BceAI ACGGC 5 cut(s) 241, 297, 411, 483, 775
BciT130I CCWGG 4 cut(s) 74, 360, 386, 610
BciVI GTATCC 1 cut(s) 862
BcnI CCSGG 2 cut(s) 586, 934
BcoDI GTCTC 2 cut(s) 343, 445
BfaI CTAG 1 cut(s) 446
BfmI CTRYAG 2 cut(s) 856, 880
BfoI RGCGCY 1 cut(s) 581
BfuI GTATCC 1 cut(s) 862
Bme1390I CCNGG 6 cut(s) 74, 360, 386, 586, 610, 934
Bme18I GGWCC 3 cut(s) 287, 409, 936
BmeT110I CYCGRG 1 cut(s) 399
BmgBI CACGTC 1 cut(s) 455
BmgT120I GGNCC 5 cut(s) 82, 287, 409, 936, 969
BmiI GGNNCC 5 cut(s) 70, 629, 706, 832, 937
BmrFI CCNGG 6 cut(s) 74, 360, 386, 586, 610, 934
BmsI GCATC 1 cut(s) 223
BoxI GACNNNNGTC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 454
BpuMI CCSGG 2 cut(s) 586, 934
BsaHI GRCGYC 1 cut(s) 495
BsaJI CCNNGG 5 cut(s) 72, 268, 358, 427, 585
Bsc4I CCNNNNNNNGG 6 cut(s) 79, 364, 418, 681, 861, 932
Bse1I ACTGG 1 cut(s) 706
BseBI CCWGG 4 cut(s) 74, 360, 386, 610
BseDI CCNNGG 5 cut(s) 72, 268, 358, 427, 585
BseGI GGATG 2 cut(s) 256, 381
BseLI CCNNNNNNNGG 6 cut(s) 79, 364, 418, 681, 861, 932
BseNI ACTGG 1 cut(s) 706
BseRI GAGGAG 2 cut(s) 182, 697
BseXI GCAGC 7 cut(s) 19, 163, 169, 674, 774, 787, 969
BsgI GTGCAG 1 cut(s) 170
Bsh1236I CGCG 2 cut(s) 429, 567
Bsh1285I CGRYCG 1 cut(s) 846
BshFI GGCC 4 cut(s) 83, 164, 426, 970
BsiEI CGRYCG 1 cut(s) 846
BsiHKCI CYCGRG 1 cut(s) 399
BsiSI CCGG 6 cut(s) 492, 585, 631, 708, 862, 933
BslFI GGGAC 2 cut(s) 416, 807
BslI CCNNNNNNNGG 6 cut(s) 79, 364, 418, 681, 861, 932
BsmAI GTCTC 2 cut(s) 343, 445
BsmBI CGTCTC 1 cut(s) 445
BsmFI GGGAC 2 cut(s) 416, 807
BsmI GAATGC 1 cut(s) 875
BsnI GGCC 4 cut(s) 83, 164, 426, 970
BsoBI CYCGRG 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 592
Bsp143I GATC 5 cut(s) 68, 733, 808, 843, 948
BspACI CCGC 7 cut(s) 142, 427, 429, 695, 723, 739, 896
BspANI GGCC 4 cut(s) 83, 164, 426, 970
BspFNI CGCG 2 cut(s) 429, 567
BspLI GGNNCC 5 cut(s) 70, 629, 706, 832, 937
BspPI GGATC 3 cut(s) 63, 76, 943
BsrI ACTGG 1 cut(s) 706
BssECI CCNNGG 5 cut(s) 72, 268, 358, 427, 585
BssMI GATC 5 cut(s) 68, 733, 808, 843, 948
BssNI GRCGYC 1 cut(s) 495
Bst2UI CCWGG 4 cut(s) 74, 360, 386, 610
Bst4CI ACNGT 2 cut(s) 136, 554
BstACI GRCGYC 1 cut(s) 495
BstC8I GCNNGC 3 cut(s) 472, 606, 968
BstDSI CCRYGG 1 cut(s) 427
BstF5I GGATG 2 cut(s) 256, 381
BstFNI CGCG 2 cut(s) 429, 567
BstH2I RGCGCY 1 cut(s) 581
BstHHI GCGC 2 cut(s) 377, 580
BstKTI GATC 5 cut(s) 71, 736, 811, 846, 951
BstMAI GTCTC 2 cut(s) 343, 445
BstMBI GATC 5 cut(s) 68, 733, 808, 843, 948
BstMCI CGRYCG 1 cut(s) 846
BstMWI GCNNNNNNNGC 5 cut(s) 148, 395, 435, 921, 963
BstNI CCWGG 4 cut(s) 74, 360, 386, 610
BstPAI GACNNNNGTC 1 cut(s) 114
BstSCI CCNGG 6 cut(s) 72, 358, 384, 584, 608, 932
BstSFI CTRYAG 2 cut(s) 856, 880
BstUI CGCG 2 cut(s) 429, 567
BstV1I GCAGC 7 cut(s) 19, 163, 169, 674, 774, 787, 969
BstX2I RGATCY 2 cut(s) 68, 948
BstYI RGATCY 2 cut(s) 68, 948
BsuI GTATCC 1 cut(s) 862
BsuRI GGCC 4 cut(s) 83, 164, 426, 970
BtgI CCRYGG 1 cut(s) 427
BtgZI GCGATG 1 cut(s) 914
BtrI CACGTC 1 cut(s) 455
BtsCI GGATG 2 cut(s) 256, 381
BtsI GCAGTG 2 cut(s) 122, 480
BtsIMutI CAGTG 3 cut(s) 93, 122, 480
Cac8I GCNNGC 3 cut(s) 472, 606, 968
CfoI GCGC 2 cut(s) 377, 580
Cfr13I GGNCC 5 cut(s) 82, 287, 409, 936, 969
Cfr42I CCGCGG 1 cut(s) 430
CseI GACGC 5 cut(s) 161, 225, 335, 484, 604
CviAII CATG 4 cut(s) 209, 372, 571, 772
DpnI GATC 5 cut(s) 70, 735, 810, 845, 950
DpnII GATC 5 cut(s) 68, 733, 808, 843, 948
DrdI GACNNNNNNGTC 2 cut(s) 845, 951
DseDI GACNNNNNNGTC 2 cut(s) 845, 951
EaeI YGGCCR 2 cut(s) 162, 424
Eco24I GRGCYC 1 cut(s) 592
Eco47I GGWCC 3 cut(s) 287, 409, 936
Eco57I CTGAAG 1 cut(s) 607
Eco88I CYCGRG 1 cut(s) 399
EcoRII CCWGG 4 cut(s) 72, 358, 384, 608
EcoT38I GRGCYC 1 cut(s) 592
Esp3I CGTCTC 1 cut(s) 445
FaeI CATG 4 cut(s) 212, 375, 574, 775
FaiI YATR 9 cut(s) 12, 62, 210, 315, 373, 572, 637, 639, 773
FaqI GGGAC 2 cut(s) 416, 807
FatI CATG 4 cut(s) 208, 371, 570, 771
FauI CCCGC 1 cut(s) 135
FokI GGATG 2 cut(s) 263, 368
FriOI GRGCYC 1 cut(s) 592
FspBI CTAG 1 cut(s) 446
GlaI GCGC 2 cut(s) 376, 579
GsuI CTGGAG 1 cut(s) 454
HaeII RGCGCY 1 cut(s) 581
HaeIII GGCC 4 cut(s) 83, 164, 426, 970
HapII CCGG 6 cut(s) 492, 585, 631, 708, 862, 933
HgaI GACGC 5 cut(s) 161, 225, 335, 484, 604
HhaI GCGC 2 cut(s) 377, 580
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 4 cut(s) 212, 375, 574, 775
Hin6I GCGC 2 cut(s) 375, 578
HinP1I GCGC 2 cut(s) 375, 578
HincII GTYRAC 2 cut(s) 223, 784
HindII GTYRAC 2 cut(s) 223, 784
HinfI GANTC 5 cut(s) 19, 351, 404, 458, 839
HpaII CCGG 6 cut(s) 492, 585, 631, 708, 862, 933
HphI GGTGA 3 cut(s) 148, 610, 922
Hpy166II GTNNAC 2 cut(s) 223, 784
Hpy188I TCNGA 7 cut(s) 27, 109, 177, 197, 272, 545, 808
Hpy188III TCNNGA 5 cut(s) 401, 521, 625, 675, 731
Hpy8I GTNNAC 2 cut(s) 223, 784
Hpy99I CGWCG 5 cut(s) 177, 329, 761, 851, 957
HpyAV CCTTC 2 cut(s) 422, 631
HpyCH4III ACNGT 2 cut(s) 136, 554
HpyCH4IV ACGT 2 cut(s) 259, 454
HpyCH4V TGCA 2 cut(s) 151, 775
HpyF10VI GCNNNNNNNGC 5 cut(s) 148, 395, 435, 921, 963
HpySE526I ACGT 2 cut(s) 259, 454
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 4 cut(s) 212, 375, 574, 775
HspAI GCGC 2 cut(s) 375, 578
KspI CCGCGG 1 cut(s) 430
Kzo9I GATC 5 cut(s) 68, 733, 808, 843, 948
LmnI GCTCC 5 cut(s) 132, 435, 627, 684, 710
Lsp1109I GCAGC 7 cut(s) 19, 163, 169, 674, 774, 787, 969
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 446
MaeII ACGT 2 cut(s) 259, 454
MaeIII GTNAC 1 cut(s) 616
MalI GATC 5 cut(s) 70, 735, 810, 845, 950
MboI GATC 5 cut(s) 68, 733, 808, 843, 948
MboII GAAGA 1 cut(s) 196
MflI RGATCY 2 cut(s) 68, 948
MhlI GDGCHC 1 cut(s) 592
MlsI TGGCCA 1 cut(s) 164
MluCI AATT 1 cut(s) 298
MluNI TGGCCA 1 cut(s) 164
MlyI GAGTC 4 cut(s) 28, 345, 398, 833
MmeI TCCRAC 3 cut(s) 155, 220, 533
Mox20I TGGCCA 1 cut(s) 164
MscI TGGCCA 1 cut(s) 164
MseI TTAA 1 cut(s) 534
Msp20I TGGCCA 1 cut(s) 164
MspA1I CMGCKG 3 cut(s) 114, 429, 960
MspI CCGG 6 cut(s) 492, 585, 631, 708, 862, 933
MspR9I CCNGG 6 cut(s) 74, 360, 386, 586, 610, 934
Mva1269I GAATGC 1 cut(s) 875
MvaI CCWGG 4 cut(s) 74, 360, 386, 610
MvnI CGCG 2 cut(s) 429, 567
MwoI GCNNNNNNNGC 5 cut(s) 148, 395, 435, 921, 963
NciI CCSGG 2 cut(s) 586, 934
NdeII GATC 5 cut(s) 68, 733, 808, 843, 948
NlaIII CATG 4 cut(s) 212, 375, 574, 775
NlaIV GGNNCC 5 cut(s) 70, 629, 706, 832, 937
NmuCI GTSAC 1 cut(s) 616
PctI GAATGC 1 cut(s) 875
PfeI GAWTC 1 cut(s) 458
PflFI GACNNNGTC 1 cut(s) 407
Ple19I CGATCG 1 cut(s) 846
PleI GAGTC 4 cut(s) 27, 345, 398, 833
PpsI GAGTC 4 cut(s) 27, 345, 398, 833
PshAI GACNNNNGTC 1 cut(s) 114
Psp6I CCWGG 4 cut(s) 72, 358, 384, 608
PspGI CCWGG 4 cut(s) 72, 358, 384, 608
PspN4I GGNNCC 5 cut(s) 70, 629, 706, 832, 937
PspPI GGNCC 5 cut(s) 82, 287, 409, 936, 969
PsuI RGATCY 2 cut(s) 68, 948
PsyI GACNNNGTC 1 cut(s) 407
PvuI CGATCG 1 cut(s) 846
PvuII CAGCTG 2 cut(s) 114, 960
SacII CCGCGG 1 cut(s) 430
SaqAI TTAA 1 cut(s) 534
Sau3AI GATC 5 cut(s) 68, 733, 808, 843, 948
Sau96I GGNCC 5 cut(s) 82, 287, 409, 936, 969
SchI GAGTC 4 cut(s) 28, 345, 398, 833
ScrFI CCNGG 6 cut(s) 74, 360, 386, 586, 610, 934
SduI GDGCHC 1 cut(s) 592
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 2 cut(s) 856, 880
Sfr303I CCGCGG 1 cut(s) 430
SgrBI CCGCGG 1 cut(s) 430
SinI GGWCC 3 cut(s) 287, 409, 936
Sse9I AATT 1 cut(s) 298
SsiI CCGC 7 cut(s) 142, 427, 429, 695, 723, 739, 896
SspI AATATT 1 cut(s) 243
SspMI CTAG 1 cut(s) 446
StyD4I CCNGG 6 cut(s) 72, 358, 384, 584, 608, 932
TaaI ACNGT 2 cut(s) 136, 554
TaiI ACGT 2 cut(s) 262, 457
TaqI TCGA 6 cut(s) 307, 324, 654, 732, 756, 842
TaqII GACCGA 1 cut(s) 397
TasI AATT 1 cut(s) 298
TauI GCSGC 5 cut(s) 429, 432, 698, 725, 899
TfiI GAWTC 1 cut(s) 458
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TscAI CASTG 3 cut(s) 100, 129, 487
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 7 cut(s) 32, 151, 182, 687, 762, 775, 957
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 4 cut(s) 252, 330, 651, 760
TspGWI ACGGA 4 cut(s) 292, 694, 840, 941
TspRI CASTG 3 cut(s) 100, 129, 487
Tth111I GACNNNGTC 1 cut(s) 407
VpaK11BI GGWCC 3 cut(s) 287, 409, 936
XspI CTAG 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.