AT5G58700

phospholipase c

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
23712827 .. 23716391
3565 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58700.2

Sequence Viewer

Length: 1794 bp
ATGGAAGGAAAAAAAGAGATGGGTAGTTACAAATTCTGTCTGATCTTCACAAGGAAGTTCAGGATGACGGAGTCTGGTCCTGTCGAAGACGTCAGAGATCTTTTCGAGAAATACACCGAAGGCGATGCTCATATGTCGCCGGAGCAGCTACAGAAGCTCATGACGGAGGAAGGAGGAGAAGGAGAAACAAGTCTAGAGGAAGCAGAGAGAATCGTTGACGAGGTTCTTCGCCGGAAACATCACATTGCAAAGTTCACCAGACGAAACCTTACTCTTGATGATTTCAATTATTACCTCTTTTCTACTGATCTTAATCCTCCTATCGCCGATCAGGTCCATCAAAACATGGATGCTCCATTGTCACATTACTTTATATTCACAGGCCACAATTCCTATTTAACTGGAAATCAGCTAAGTAGCAACTGCAGTGAACTTCCTATTGCAGATGCATTGAGACGAGGCGTGAGAGTTGTTGAGTTGGATCTTTGGCCACGTGGTACCGATGATGTCTGCGTTAAACATGGAAGGACATTGACAAAGGAAGTGAAGTTGGGAAAATGTTTGGAATCTATTAAAGCTAATGCCTTTGCTATTTCAAAGTATCCTGTTATTATTACTCTTGAAGACCATCTCACGCCAAAACTTCAGTTTAAAGTTGCTAAGATGATAACTCAGACATTTGGAGATATGTTGTATTACCATGATTCTCAAGGTTGTCAAGAATTTCCTTCACCGGAAGAGTTGAAGGAAAAGATTCTAATTTCAACAAAACCTCCAAAAGAGTACTTAGAAGCTAACGATACTAAGGAGAAAGATAATGGAGAAAAAGGTAAGGATTCGGATGAGGATGTATGGGGCAAAGAGCCAGAAGACCTTATTTCTACGCAATCTGATCTTGACAAGGTGACAAGCAGTGTAAATGATCTCAATCAAGATGATGAAGAAAGGGGGTCTTGTGAGTCTGATACGTCATGCCAATTACAAGCACCAGAATACAAGCGTCTTATCGCTATCCATGCCGGGAAGCCAAAAGGCGGTTTACGGATGGCTTTAAAGGTTGATCCAAATAAAATCAGGCGACTTAGTCTGAGTGAGCAATTACTTGAGAAAGCTGTAGCATCATATGGTGCAGATGTTATCAGATTCACTCAGAAGAATTTTCTGAGGATATATCCCAAAGGCACAAGGTTTAACTCTTCAAACTATAAACCTCAGATCGGTTGGATGAGCGGAGCTCAAATGATTGCATTCAACATGCAGGGGTATGGCAGAGCATTGTGGCTGATGGAAGGAATGTTTCGAGCAAATGGAGGGTGCGGTTATGTCAAGAAGCCAGATTTTCTTATGGATGCAAGTCCTAATGGACAAGATTTTTACCCCAAAGATAATTCGTCTCCAAAGAAAACTTTAAAGGTGAAAGTCTGTATGGGAGATGGATGGCTCCTAGACTTCAAAAAAACTCACTTTGATTCTTATTCTCCTCCAGATTTCTTCGTTAGAGTGGGTATTGCTGGAGCACCTGTTGATGAGGTGATGGAGAAAACAAAAATAGAGTATGATACATGGACACCTATTTGGAATAAGGAGTTCACATTCCCTTTAGCAGTTCCTGAACTTGCTCTGCTCCGTGTTGAAGTTCATGAGCACGACGTGAATGAAAAAGATGATTTTGGAGGTCAAACTTGTTTACCAGTTTCAGAGATAAGACAAGGCATACGCGCTGTTCCACTCTTTAATCGCAAGGGAGTGAAATACAGCTCCACACGGCTTCTTATGCGCTTCGAGTTTGTCTGA

Protein Analysis

597

Amino Acids

68.04

Weight (kDa)

5.84

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC-X PF00388 8 - 149 8.1e-53 Phosphatidylinositol-specific phospholipase C, X domain
PI-PLC-Y PF00387 253 - 339 2.8e-27 Phosphatidylinositol-specific phospholipase C, Y domain
C2 PF00168 361 - 463 6.8e-13 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 93
Acc65I GGTACC 1 cut(s) 497
AccB1I GGYRCC 1 cut(s) 497
AccBSI CCGCTC 1 cut(s) 1230
AccII CGCG 1 cut(s) 1719
AciI CCGC 3 cut(s) 1035, 1230, 1317
AclWI GGATC 2 cut(s) 489, 1055
AcoI YGGCCR 1 cut(s) 488
AcsI RAATTY 3 cut(s) 32, 722, 1156
AcuI CTGAAG 1 cut(s) 629
AcvI CACGTG 1 cut(s) 494
AcyI GRCGYC 1 cut(s) 90
AdeI CACNNNGTG 1 cut(s) 1651
AfaI GTAC 2 cut(s) 499, 785
AfiI CCNNNNNNNGG 2 cut(s) 1034, 1217
AgsI TTSAA 9 cut(s) 286, 597, 623, 745, 765, 1200, 1252, 1453, 1634
AjiI CACGTC 1 cut(s) 1651
AluBI AGCT 8 cut(s) 148, 157, 412, 578, 794, 1112, 1235, 1758
AluI AGCT 8 cut(s) 148, 157, 412, 578, 794, 1112, 1235, 1758
Alw21I GWGCWC 3 cut(s) 1237, 1519, 1647
Alw26I GTCTC 2 cut(s) 448, 1398
AlwI GGATC 2 cut(s) 489, 1055
AlwNI CAGNNNCTG 1 cut(s) 1610
AoxI GGCC 2 cut(s) 382, 488
ApeKI GCWGC 1 cut(s) 145
ApoI RAATTY 3 cut(s) 32, 722, 1156
Asp700I GAANNNNTTC 1 cut(s) 753
Asp718I GGTACC 1 cut(s) 497
AspLEI GCGC 2 cut(s) 1721, 1779
AspS9I GGNCC 2 cut(s) 77, 334
AsuC2I CCSGG 1 cut(s) 1021
AsuHPI GGTGA 5 cut(s) 247, 723, 916, 1426, 1543
AvaII GGWCC 2 cut(s) 77, 334
BalI TGGCCA 1 cut(s) 490
BanI GGYRCC 1 cut(s) 497
BanII GRGCYC 1 cut(s) 1237
BbrPI CACGTG 1 cut(s) 494
BbsI GAAGAC 3 cut(s) 93, 630, 876
Bbv12I GWGCWC 3 cut(s) 1237, 1519, 1647
BbvI GCAGC 1 cut(s) 157
BccI CCATC 8 cut(s) 13, 345, 636, 1039, 1279, 1427, 1431, 1528
BceAI ACGGC 1 cut(s) 1781
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciVI GTATCC 1 cut(s) 612
BcnI CCSGG 1 cut(s) 1021
BcoDI GTCTC 2 cut(s) 448, 1398
BfaI CTAG 2 cut(s) 194, 1445
BfmI CTRYAG 3 cut(s) 149, 424, 1113
BfuI GTATCC 1 cut(s) 612
BglII AGATCT 1 cut(s) 97
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
BmcAI AGTACT 1 cut(s) 785
Bme1390I CCNGG 1 cut(s) 1021
Bme18I GGWCC 2 cut(s) 77, 334
BmgBI CACGTC 1 cut(s) 1651
BmgT120I GGNCC 2 cut(s) 77, 334
BmiI GGNNCC 2 cut(s) 499, 1442
BmrFI CCNGG 1 cut(s) 1021
BmsI GCATC 5 cut(s) 115, 340, 436, 1127, 1339
BpiI GAAGAC 3 cut(s) 93, 630, 876
BplI GAGNNNNNCTC 2 cut(s) 1219, 1251
BpmI CTGGAG 2 cut(s) 1467, 1533
BpuEI CTTGAG 2 cut(s) 693, 1124
BpuMI CCSGG 1 cut(s) 1021
BsaAI YACGTR 1 cut(s) 494
BsaBI GATNNNNATC 2 cut(s) 312, 927
BsaHI GRCGYC 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 733
BsaXI ACNNNNNCTCC 4 cut(s) 757, 787, 1506, 1536
Bsc4I CCNNNNNNNGG 2 cut(s) 1034, 1217
Bse1I ACTGG 2 cut(s) 406, 1691
Bse3DI GCAATG 1 cut(s) 243
Bse8I GATNNNNATC 2 cut(s) 312, 927
BseGI GGATG 8 cut(s) 69, 355, 847, 853, 1050, 1230, 1354, 1442
BseJI GATNNNNATC 2 cut(s) 312, 927
BseLI CCNNNNNNNGG 2 cut(s) 1034, 1217
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 5 cut(s) 686, 1079, 1154, 1163, 1226
BseNI ACTGG 2 cut(s) 406, 1691
BseRI GAGGAG 2 cut(s) 189, 1470
BseXI GCAGC 1 cut(s) 157
BsgI GTGCAG 1 cut(s) 1149
Bsh1236I CGCG 1 cut(s) 1719
BshFI GGCC 2 cut(s) 384, 490
BshNI GGYRCC 1 cut(s) 497
BsiHKAI GWGCWC 3 cut(s) 1237, 1519, 1647
BsiSI CCGG 4 cut(s) 140, 232, 734, 1020
BslI CCNNNNNNNGG 2 cut(s) 1034, 1217
BsmAI GTCTC 2 cut(s) 448, 1398
BsmBI CGTCTC 2 cut(s) 448, 1398
BsmI GAATGC 1 cut(s) 1247
BsnI GGCC 2 cut(s) 384, 490
Bsp1286I GDGCHC 3 cut(s) 1237, 1519, 1647
Bsp143I GATC 9 cut(s) 42, 97, 307, 328, 481, 892, 922, 1060, 1215
BspACI CCGC 3 cut(s) 1035, 1230, 1317
BspANI GGCC 2 cut(s) 384, 490
BspCNI CTCAG 5 cut(s) 685, 1080, 1155, 1162, 1225
BspFNI CGCG 1 cut(s) 1719
BspHI TCATGA 2 cut(s) 159, 1639
BspLI GGNNCC 2 cut(s) 499, 1442
BspMAI CTGCAG 1 cut(s) 428
BspPI GGATC 2 cut(s) 489, 1055
BspT107I GGYRCC 1 cut(s) 497
BsrBI CCGCTC 1 cut(s) 1230
BsrDI GCAATG 1 cut(s) 243
BsrI ACTGG 2 cut(s) 406, 1691
BssMI GATC 9 cut(s) 42, 97, 307, 328, 481, 892, 922, 1060, 1215
BssNI GRCGYC 1 cut(s) 90
Bst6I CTCTTC 2 cut(s) 732, 1201
BstACI GRCGYC 1 cut(s) 90
BstBAI YACGTR 1 cut(s) 494
BstF5I GGATG 8 cut(s) 69, 355, 847, 853, 1050, 1230, 1354, 1442
BstFNI CGCG 1 cut(s) 1719
BstHHI GCGC 2 cut(s) 1721, 1779
BstKTI GATC 9 cut(s) 45, 100, 310, 331, 484, 895, 925, 1063, 1218
BstMAI GTCTC 2 cut(s) 448, 1398
BstMBI GATC 9 cut(s) 42, 97, 307, 328, 481, 892, 922, 1060, 1215
BstMWI GCNNNNNNNGC 4 cut(s) 145, 154, 1016, 1774
BstNSI RCATGY 1 cut(s) 1258
BstSCI CCNGG 1 cut(s) 1019
BstSFI CTRYAG 3 cut(s) 149, 424, 1113
BstUI CGCG 1 cut(s) 1719
BstV1I GCAGC 1 cut(s) 157
BstV2I GAAGAC 3 cut(s) 93, 630, 876
BstX2I RGATCY 2 cut(s) 97, 481
BstYI RGATCY 2 cut(s) 97, 481
BsuI GTATCC 1 cut(s) 612
BsuRI GGCC 2 cut(s) 384, 490
BtgZI GCGATG 1 cut(s) 138
BtrI CACGTC 1 cut(s) 1651
BtsCI GGATG 8 cut(s) 69, 355, 847, 853, 1050, 1230, 1354, 1442
BtsI GCAGTG 2 cut(s) 433, 919
BtsIMutI CAGTG 2 cut(s) 433, 919
CaiI CAGNNNCTG 1 cut(s) 1610
CciI TCATGA 2 cut(s) 159, 1639
CfoI GCGC 2 cut(s) 1721, 1779
Cfr13I GGNCC 2 cut(s) 77, 334
CseI GACGC 1 cut(s) 989
Csp6I GTAC 2 cut(s) 498, 784
CviAII CATG 9 cut(s) 160, 346, 521, 701, 972, 1016, 1255, 1563, 1640
CviQI GTAC 2 cut(s) 498, 784
DpnI GATC 9 cut(s) 44, 99, 309, 330, 483, 894, 924, 1062, 1217
DpnII GATC 9 cut(s) 42, 97, 307, 328, 481, 892, 922, 1060, 1215
DraI TTTAAA 3 cut(s) 652, 1053, 1410
DraIII CACNNNGTG 1 cut(s) 1651
EaeI YGGCCR 1 cut(s) 488
Eam1104I CTCTTC 2 cut(s) 732, 1201
EarI CTCTTC 2 cut(s) 732, 1201
Ecl136II GAGCTC 1 cut(s) 1235
Eco24I GRGCYC 1 cut(s) 1237
Eco47I GGWCC 2 cut(s) 77, 334
Eco53kI GAGCTC 1 cut(s) 1235
Eco57I CTGAAG 1 cut(s) 629
Eco72I CACGTG 1 cut(s) 494
EcoICRI GAGCTC 1 cut(s) 1235
EcoT22I ATGCAT 1 cut(s) 451
EcoT38I GRGCYC 1 cut(s) 1237
Esp3I CGTCTC 2 cut(s) 448, 1398
FaeI CATG 9 cut(s) 163, 349, 524, 704, 975, 1019, 1258, 1566, 1643
FalI AAGNNNNNCTT 2 cut(s) 937, 969
FatI CATG 9 cut(s) 159, 345, 520, 700, 971, 1015, 1254, 1562, 1639
FauNDI CATATG 2 cut(s) 132, 1123
Fnu4HI GCNGC 1 cut(s) 146
FokI GGATG 8 cut(s) 76, 362, 854, 860, 1057, 1237, 1361, 1449
FriOI GRGCYC 1 cut(s) 1237
Fsp4HI GCNGC 1 cut(s) 146
FspBI CTAG 2 cut(s) 194, 1445
GlaI GCGC 2 cut(s) 1720, 1778
GluI GCNGC 1 cut(s) 146
GsuI CTGGAG 2 cut(s) 1467, 1533
HaeIII GGCC 2 cut(s) 384, 490
HapII CCGG 4 cut(s) 140, 232, 734, 1020
HgaI GACGC 1 cut(s) 989
HhaI GCGC 2 cut(s) 1721, 1779
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 9 cut(s) 163, 349, 524, 704, 975, 1019, 1258, 1566, 1643
Hin6I GCGC 2 cut(s) 1719, 1777
HinP1I GCGC 2 cut(s) 1719, 1777
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 9 cut(s) 71, 210, 566, 704, 754, 836, 959, 1143, 1469
HpaII CCGG 4 cut(s) 140, 232, 734, 1020
HphI GGTGA 5 cut(s) 247, 723, 916, 1426, 1543
Hpy166II GTNNAC 6 cut(s) 217, 255, 431, 1040, 1590, 1688
Hpy8I GTNNAC 6 cut(s) 217, 255, 431, 1040, 1590, 1688
Hpy99I CGWCG 1 cut(s) 1652
HpyAV CCTTC 7 cut(s) 113, 164, 173, 519, 738, 739, 1283
HpyCH4IV ACGT 4 cut(s) 90, 493, 968, 1650
HpyCH4V TGCA 8 cut(s) 248, 426, 443, 449, 1130, 1247, 1258, 1352
HpyF10VI GCNNNNNNNGC 4 cut(s) 145, 154, 1016, 1774
HpySE526I ACGT 4 cut(s) 90, 493, 968, 1650
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 9 cut(s) 163, 349, 524, 704, 975, 1019, 1258, 1566, 1643
HspAI GCGC 2 cut(s) 1719, 1777
KpnI GGTACC 1 cut(s) 501
Kzo9I GATC 9 cut(s) 42, 97, 307, 328, 481, 892, 922, 1060, 1215
LmnI GCTCC 7 cut(s) 142, 358, 1232, 1446, 1514, 1629, 1763
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 5 cut(s) 115, 340, 436, 1127, 1339
MaeI CTAG 2 cut(s) 194, 1445
MaeII ACGT 4 cut(s) 90, 493, 968, 1650
MaeIII GTNAC 3 cut(s) 26, 360, 904
MalI GATC 9 cut(s) 44, 99, 309, 330, 483, 894, 924, 1062, 1217
MbiI CCGCTC 1 cut(s) 1230
MboI GATC 9 cut(s) 42, 97, 307, 328, 481, 892, 922, 1060, 1215
MflI RGATCY 2 cut(s) 97, 481
MhlI GDGCHC 3 cut(s) 1237, 1519, 1647
MlsI TGGCCA 1 cut(s) 490
MluCI AATT 9 cut(s) 32, 286, 388, 722, 759, 977, 1097, 1156, 1387
MluNI TGGCCA 1 cut(s) 490
MlyI GAGTC 2 cut(s) 80, 968
MmeI TCCRAC 2 cut(s) 459, 1202
Mox20I TGGCCA 1 cut(s) 490
Mph1103I ATGCAT 1 cut(s) 451
MroXI GAANNNNTTC 1 cut(s) 753
MscI TGGCCA 1 cut(s) 490
MseI TTAA 9 cut(s) 312, 398, 516, 573, 651, 1052, 1191, 1409, 1734
Msp20I TGGCCA 1 cut(s) 490
MspI CCGG 4 cut(s) 140, 232, 734, 1020
MspR9I CCNGG 1 cut(s) 1021
Mva1269I GAATGC 1 cut(s) 1247
MvnI CGCG 1 cut(s) 1719
MwoI GCNNNNNNNGC 4 cut(s) 145, 154, 1016, 1774
NciI CCSGG 1 cut(s) 1021
NdeI CATATG 2 cut(s) 132, 1123
NdeII GATC 9 cut(s) 42, 97, 307, 328, 481, 892, 922, 1060, 1215
NlaIII CATG 9 cut(s) 163, 349, 524, 704, 975, 1019, 1258, 1566, 1643
NlaIV GGNNCC 2 cut(s) 499, 1442
NmuCI GTSAC 2 cut(s) 360, 904
NsiI ATGCAT 1 cut(s) 451
NspI RCATGY 1 cut(s) 1258
PagI TCATGA 2 cut(s) 159, 1639
PctI GAATGC 1 cut(s) 1247
PdmI GAANNNNTTC 1 cut(s) 753
PfeI GAWTC 7 cut(s) 210, 566, 704, 754, 836, 1143, 1469
PflFI GACNNNGTC 2 cut(s) 70, 1083
PkrI GCNGC 1 cut(s) 147
PleI GAGTC 2 cut(s) 79, 967
PmaCI CACGTG 1 cut(s) 494
PmlI CACGTG 1 cut(s) 494
PpsI GAGTC 2 cut(s) 79, 967
Ppu21I YACGTR 1 cut(s) 494
Psp124BI GAGCTC 1 cut(s) 1237
PspCI CACGTG 1 cut(s) 494
PspN4I GGNNCC 2 cut(s) 499, 1442
PspPI GGNCC 2 cut(s) 77, 334
PstI CTGCAG 1 cut(s) 428
PstNI CAGNNNCTG 1 cut(s) 1610
PsuI RGATCY 2 cut(s) 97, 481
PsyI GACNNNGTC 2 cut(s) 70, 1083
RsaI GTAC 2 cut(s) 499, 785
RsaNI GTAC 2 cut(s) 498, 784
SacI GAGCTC 1 cut(s) 1237
SaqAI TTAA 9 cut(s) 312, 398, 516, 573, 651, 1052, 1191, 1409, 1734
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 9 cut(s) 42, 97, 307, 328, 481, 892, 922, 1060, 1215
Sau96I GGNCC 2 cut(s) 77, 334
ScaI AGTACT 1 cut(s) 785
SchI GAGTC 2 cut(s) 80, 968
ScrFI CCNGG 1 cut(s) 1021
SduI GDGCHC 3 cut(s) 1237, 1519, 1647
SfaNI GCATC 5 cut(s) 115, 340, 436, 1127, 1339
SfcI CTRYAG 3 cut(s) 149, 424, 1113
SinI GGWCC 2 cut(s) 77, 334
SmlI CTYRAG 2 cut(s) 708, 1103
SmoI CTYRAG 2 cut(s) 708, 1103
Sse9I AATT 9 cut(s) 32, 286, 388, 722, 759, 977, 1097, 1156, 1387
SsiI CCGC 3 cut(s) 1035, 1230, 1317
SspMI CTAG 2 cut(s) 194, 1445
SstI GAGCTC 1 cut(s) 1237
StyD4I CCNGG 1 cut(s) 1019
TaiI ACGT 4 cut(s) 93, 496, 971, 1653
TaqI TCGA 4 cut(s) 84, 105, 1300, 1782
TasI AATT 9 cut(s) 32, 286, 388, 722, 759, 977, 1097, 1156, 1387
TatI WGTACW 1 cut(s) 783
TfiI GAWTC 7 cut(s) 210, 566, 704, 754, 836, 1143, 1469
Tru1I TTAA 9 cut(s) 312, 398, 516, 573, 651, 1052, 1191, 1409, 1734
Tru9I TTAA 9 cut(s) 312, 398, 516, 573, 651, 1052, 1191, 1409, 1734
TscAI CASTG 2 cut(s) 433, 919
TseFI GTSAC 2 cut(s) 360, 904
TseI GCWGC 1 cut(s) 145
Tsp45I GTSAC 2 cut(s) 360, 904
TspDTI ATGAA 3 cut(s) 954, 1628, 1671
TspGWI ACGGA 4 cut(s) 83, 179, 1057, 1616
TspRI CASTG 2 cut(s) 433, 919
Tth111I GACNNNGTC 2 cut(s) 70, 1083
VpaK11BI GGWCC 2 cut(s) 77, 334
XapI RAATTY 3 cut(s) 32, 722, 1156
XbaI TCTAGA 1 cut(s) 193
XceI RCATGY 1 cut(s) 1258
XmnI GAANNNNTTC 1 cut(s) 753
XspI CTAG 2 cut(s) 194, 1445
ZraI GACGTC 1 cut(s) 91
ZrmI AGTACT 1 cut(s) 785
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.