Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8457285.1

Orthogroup ID

OG0007017

Physical Location & Seq

Genomic Coordinates Forward (+)

274 .. 1782

Gene Structure 1509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8457285.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgaatgctccattgtctcattactacatatatactggacataattcatacctgactggaaatcaactcagtagtgactgtagtcatgtgccaatcataaaggcgctgaagagaggtgtgagagtggtggagcttgatctttggccaaattccaaaaaggatgatgttaatgttcttcatggaaggaccttgacaacccctgtggagcttgttaaatgcttgaaatcaattaaggagcatgcttttactgattctccataccctgtagtcataactcttgaagaccaccttacccctgatctccaagctaaagtagcaaagctgctcatgaagacatttaaggatatgttgtttattcctgattccgaatgtttcaaaaaattaccttcaccggaagaactgaagtatcgaattatcatatctaccaaacctcctaaggagtaccttgaggataaatgtgtcactgtcaaggcagataacatacacaagagaaaagatagcgaagaagatgcatgggggaatgaaccttcagagcatacggaggaacacgaagatgttgatacgagtgaaagtgaagcaagtgaacaaaatctggattacgaggataacaataactctaatcgtggagcagaacccgcatcatacaaacgtctcattgcactccatgctgggaaaccaaatggtggtttaaaggaggcactaaaagttgaagttgatagagttagacgccttagtttgagtgaacaagcacttgagaaggctgctgaatctcatggaactgatgttgttaggtactttaatttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04020 ko04070 ko04919 ko04933 map00562 map01100 map04020 map04070 map04919 map04933

Pfam Domains

Protein Families

C2 EF-hand_like PI-PLC-X PI-PLC-Y

Protein Analysis

268

Amino Acids

30.39

Weight (kDa)

5.7

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58690 AT5G58690 AT5G58690 AT5G58700 AT5G58700 AT5G58700
fragaria_vesca	FvH4_3g38660
malus_domestica	MD03G1069000.v1.1
prunus_persica	Prupe.6G056800_v2.0.a1 Prupe.6G056800_v2.0.a1 Prupe.6G056900_v2.0.a1 Prupe.6G056900_v2.0.a1 Prupe.6G056900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0069691
rosa_laevigata	RLG00000036086
rosa_multiflora	Rmu_co8457285.1_g000001 Rmu_sc0000738.1_g000034 Rmu_sc0007688.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011380
rosa_rugosa	Rorug05G0399200
rosa_samantha	Rh5AG456200 Rh5BG475200 Rh5CG498800 Rh5DG486600
rosa_wichuraiana	Rw5G042560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	683
AciI	CCGC	1 cut(s)	636
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	148
AcuI	CTGAAG	3 cut(s)	128, 422, 513
AcyI	GRCGYC	1 cut(s)	727
AfaI	GTAC	2 cut(s)	443, 794
AfiI	CCNNNNNNNGG	1 cut(s)	683
AgsI	TTSAA	4 cut(s)	223, 281, 376, 710
AluBI	AGCT	4 cut(s)	133, 208, 308, 322
AluI	AGCT	4 cut(s)	133, 208, 308, 322
Alw26I	GTCTC	2 cut(s)	21, 656
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	322, 761
ApoI	RAATTY	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	381
AvaII	GGWCC	1 cut(s)	186
AxyI	CCTNAGG	1 cut(s)	435
BaeI	ACNNNNGTAYC	2 cut(s)	389, 422
BalI	TGGCCA	1 cut(s)	145
BbsI	GAAGAC	2 cut(s)	288, 338
BbvI	GCAGC	2 cut(s)	309, 748
BcgI	CGANNNNNNTGC	2 cut(s)	491, 525
BcoDI	GTCTC	2 cut(s)	21, 656
BfaI	CTAG	1 cut(s)	805
BfmI	CTRYAG	2 cut(s)	79, 264
BfoI	RGCGCY	1 cut(s)	107
BisI	GCNGC	2 cut(s)	323, 762
BlsI	GCNGC	2 cut(s)	324, 763
Bme18I	GGWCC	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	186
BmsI	GCATC	2 cut(s)	499, 647
BoxI	GACNNNNGTC	1 cut(s)	81
BpiI	GAAGAC	2 cut(s)	288, 338
BpuEI	CTTGAG	2 cut(s)	467, 773
BsaHI	GRCGYC	1 cut(s)	727
BsaWI	WCCGGW	1 cut(s)	391
BsaXI	ACNNNNNCTCC	4 cut(s)	238, 268, 415, 445
Bsc4I	CCNNNNNNNGG	1 cut(s)	683
Bse1I	ACTGG	2 cut(s)	40, 61
Bse21I	CCTNAGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	654
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	683
BseMI	GCAATG	1 cut(s)	654
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	2 cut(s)	40, 61
BseXI	GCAGC	2 cut(s)	309, 748
BseYI	CCCAGC	1 cut(s)	668
BshFI	GGCC	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	683
BsmAI	GTCTC	2 cut(s)	21, 656
BsmBI	CGTCTC	1 cut(s)	656
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	136, 298
BspACI	CCGC	1 cut(s)	636
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	654
BsrI	ACTGG	2 cut(s)	40, 61
BssMI	GATC	2 cut(s)	136, 298
BssNI	GRCGYC	1 cut(s)	727
Bst4CI	ACNGT	2 cut(s)	80, 466
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	727
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	3 cut(s)	68, 435, 731
BstF5I	GGATG	1 cut(s)	166
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	2 cut(s)	139, 301
BstMAI	GTCTC	2 cut(s)	21, 656
BstMBI	GATC	2 cut(s)	136, 298
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 635, 665
BstNSI	RCATGY	1 cut(s)	242
BstPAI	GACNNNNGTC	1 cut(s)	81
BstSFI	CTRYAG	2 cut(s)	79, 264
BstV1I	GCAGC	2 cut(s)	309, 748
BstV2I	GAAGAC	2 cut(s)	288, 338
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	1 cut(s)	240
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	186
CseI	GACGC	1 cut(s)	735
Csp6I	GTAC	2 cut(s)	442, 793
CspCI	CAANNNNNGTGG	2 cut(s)	183, 218
CviAII	CATG	7 cut(s)	86, 179, 239, 328, 513, 665, 773
CviJI	RGCY	6 cut(s)	133, 145, 208, 308, 322, 761
CviKI_1	RGCY	6 cut(s)	133, 145, 208, 308, 322, 761
CviQI	GTAC	2 cut(s)	442, 793
DdeI	CTNAG	3 cut(s)	68, 435, 731
DpnI	GATC	2 cut(s)	138, 300
DpnII	GATC	2 cut(s)	136, 298
DraI	TTTAAA	1 cut(s)	690
EaeI	YGGCCR	1 cut(s)	143
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	186
Eco57I	CTGAAG	3 cut(s)	128, 422, 513
Eco81I	CCTNAGG	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	186
EcoT22I	ATGCAT	1 cut(s)	514
Esp3I	CGTCTC	1 cut(s)	656
FaeI	CATG	7 cut(s)	89, 182, 242, 331, 516, 668, 776
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FatI	CATG	7 cut(s)	85, 178, 238, 327, 512, 664, 772
FauI	CCCGC	1 cut(s)	643
Fnu4HI	GCNGC	2 cut(s)	323, 762
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	2 cut(s)	323, 762
FspBI	CTAG	1 cut(s)	805
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	2 cut(s)	323, 762
GsaI	CCCAGC	1 cut(s)	672
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	1 cut(s)	392
HgaI	GACGC	1 cut(s)	735
HhaI	GCGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	727
Hin1II	CATG	7 cut(s)	89, 182, 242, 331, 516, 668, 776
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HinfI	GANTC	3 cut(s)	251, 362, 767
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	1 cut(s)	381
Hpy166II	GTNNAC	2 cut(s)	584, 743
Hpy188I	TCNGA	2 cut(s)	367, 532
Hpy188III	TCNNGA	4 cut(s)	278, 328, 359, 593
Hpy8I	GTNNAC	2 cut(s)	584, 743
HpyAV	CCTTC	4 cut(s)	177, 396, 537, 751
HpyCH4III	ACNGT	2 cut(s)	80, 466
HpyCH4IV	ACGT	1 cut(s)	649
HpyCH4V	TGCA	2 cut(s)	512, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 635, 665
HpyF3I	CTNAG	3 cut(s)	68, 435, 731
HpySE526I	ACGT	1 cut(s)	649
Hsp92I	GRCGYC	1 cut(s)	727
Hsp92II	CATG	7 cut(s)	89, 182, 242, 331, 516, 668, 776
HspAI	GCGC	1 cut(s)	104
Kzo9I	GATC	2 cut(s)	136, 298
LmnI	GCTCC	5 cut(s)	13, 130, 205, 235, 626
Lsp1109I	GCAGC	2 cut(s)	309, 748
LweI	GCATC	2 cut(s)	499, 647
MaeI	CTAG	1 cut(s)	805
MaeII	ACGT	1 cut(s)	649
MaeIII	GTNAC	2 cut(s)	74, 460
MalI	GATC	2 cut(s)	138, 300
MboI	GATC	2 cut(s)	136, 298
MboII	GAAGA	8 cut(s)	121, 167, 293, 343, 407, 515, 518, 563
MlsI	TGGCCA	1 cut(s)	145
MluCI	AATT	6 cut(s)	43, 148, 228, 380, 411, 799
MluNI	TGGCCA	1 cut(s)	145
MnlI	CCTC	6 cut(s)	107, 441, 442, 535, 595, 688
Mox20I	TGGCCA	1 cut(s)	145
Mph1103I	ATGCAT	1 cut(s)	514
MscI	TGGCCA	1 cut(s)	145
MseI	TTAA	6 cut(s)	168, 213, 231, 339, 689, 798
MslI	CAYNNNNRTG	1 cut(s)	552
Msp20I	TGGCCA	1 cut(s)	145
MspI	CCGG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	10
MwoI	GCNNNNNNNGC	3 cut(s)	314, 635, 665
NdeII	GATC	2 cut(s)	136, 298
NlaIII	CATG	7 cut(s)	89, 182, 242, 331, 516, 668, 776
NmuCI	GTSAC	2 cut(s)	74, 460
NsiI	ATGCAT	1 cut(s)	514
NspI	RCATGY	1 cut(s)	242
PaeI	GCATGC	1 cut(s)	242
PagI	TCATGA	1 cut(s)	327
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	3 cut(s)	251, 362, 767
PflMI	CCANNNNNTGG	1 cut(s)	683
PkrI	GCNGC	2 cut(s)	324, 763
PpuMI	RGGWCCY	1 cut(s)	186
PshAI	GACNNNNGTC	1 cut(s)	81
Psp5II	RGGWCCY	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	668
PspPI	GGNCC	1 cut(s)	186
PspPPI	RGGWCCY	1 cut(s)	186
RsaI	GTAC	2 cut(s)	443, 794
RsaNI	GTAC	2 cut(s)	442, 793
RseI	CAYNNNNRTG	1 cut(s)	552
SaqAI	TTAA	6 cut(s)	168, 213, 231, 339, 689, 798
SatI	GCNGC	2 cut(s)	323, 762
Sau3AI	GATC	2 cut(s)	136, 298
Sau96I	GGNCC	1 cut(s)	186
SfaNI	GCATC	2 cut(s)	499, 647
SfcI	CTRYAG	2 cut(s)	79, 264
SinI	GGWCC	1 cut(s)	186
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	2 cut(s)	446, 752
SmoI	CTYRAG	2 cut(s)	446, 752
SphI	GCATGC	1 cut(s)	242
Sse9I	AATT	6 cut(s)	43, 148, 228, 380, 411, 799
SsiI	CCGC	1 cut(s)	636
SspMI	CTAG	1 cut(s)	805
TaaI	ACNGT	2 cut(s)	80, 466
TaiI	ACGT	1 cut(s)	652
TaqI	TCGA	1 cut(s)	409
TasI	AATT	6 cut(s)	43, 148, 228, 380, 411, 799
TfiI	GAWTC	3 cut(s)	251, 362, 767
Tru1I	TTAA	6 cut(s)	168, 213, 231, 339, 689, 798
Tru9I	TTAA	6 cut(s)	168, 213, 231, 339, 689, 798
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	2 cut(s)	74, 460
TseI	GCWGC	2 cut(s)	322, 761
Tsp45I	GTSAC	2 cut(s)	74, 460
TspDTI	ATGAA	5 cut(s)	17, 36, 167, 344, 537
TspGWI	ACGGA	1 cut(s)	554
TspRI	CASTG	1 cut(s)	469
Van91I	CCANNNNNTGG	1 cut(s)	683
VpaK11BI	GGWCC	1 cut(s)	186
XapI	RAATTY	1 cut(s)	148
XceI	RCATGY	1 cut(s)	242
XspI	CTAG	1 cut(s)	805
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.