FvH4_3g38660

Phosphoinositide phospholipase C

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
32949153 .. 32953294
4142 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38660.t1

Sequence Viewer

Length: 1767 bp
ATGGGGAGTTACCGGATGTGCGTGTGCTTCACTCGCAAGTTCAGGATCACAGAGGCTGAGCCACCTTCCGACGTGACGGAATACTTCGCTAAGTACGCCGAGGGAGGGACCCACATGACCGCCGAGCAGCTCAGGAACTTTCTGGAGGATGTTCAGGGCTACGGCGGCGCGTCGATCTCGGAGGCCGAGCAGATCGTGGAGCAGATGCTGCAGAAGAGGCACCACCACATTGCCAAGTTGATAACGAGGCGCACGCTCACTCTGGAAGACTTCCACCATTACTTGTTCTCTGCTGATCTCAACCCTCCAATAGAGAACCAGGTTCATCAGGATATGAATGCTCCATTGTCTCATTACTACATATATACTGGACACAATTCATATTTGACTGGAAATCAACTCAGTAGTGACTGCAGTCATGTTCCAATCATCAAGGCACTGAAGAGAGGTGTGAGAGTGGTGGAGCTTGATCTTTGGCCAAATTCGGCAAAGGATGATGTCAATGTTCTTCATGGAAGGACCTTGACAACTCCTGTGGAACTTGTTAAGTGCTTGAAGTCAATTAAAGAGCATGCTTTTACTGAATCTCCATATCCTGTTGTCATAACTCTTGAAGATCACCTTACCCCTGATCTCCAAGCTAAAGTAGCAAAGCTGCTCATGAAGACATTTAAGGAAATGTTGTTTATTCCTGATTCTGAATGTTTCAAAAAATTACCTTCACCAGAAGATCTGAAGTATCGAATAATCATATCTACCAAACCTCCTAAAGAGTACCTTGAGGATAAAAGTGTCAATGACAAGGAAGATAACTTGCACAAGAGAAAAGATAGCGAAGAAGATGAATGGGGGAATGAACCTGCAGAGCCTAAAGAGGAACACGAAGATGTTGGTACAAGTGAAAGTGAAGCAAGTGAACTAAATCAGGATTGCGAGGATAACAATAACTCCAGTCATGGAGCAGAACCTGCATCATACAAACGCCTAATTGCGATCCATGCTGGGAAACCAAGTGGTGGTTTAAAGGAGGCACTTAAAGTTGAGGTTGATCGAGTCAGACGCCTTAGTTTGAGTGAACAAGCACTTGAAAAGGCTGCTGAATGTCATGGAACTGATGTTGTTAGGTTCACCCAGAAGAACATTTTAAGGGTCTATCCAAAAGGAACTCGGTTCAACTCCTCCAACTATAAGCCGCTTATTGGTTGGATGCATGGTGCTCAGATGGTTGCATTTAATATGCAGGGATATGGTAAATCTCTTTGGCTGATGCATGGGATGTTTAGAGCAAATGGGGGATGTGGTTATGTAAAAAAGCCTGATTTTGTCATGAATGATGAGCAGATTTTCGATCCTAAAGCAAAATTGACTGTAAAGAAGACTTTAAAGGTGAAAGTGTATATGGGAGATGGTTGGCATTTGGATTTCAAACAAACACACTTTGATTTATATTCACCACCTGATTTTTACACCAGGGTCGGCATAGCAGGAGTTCCAGCTGATGAGGTAATGAAGAAAACTAAGAAAAAAGAGGATGATTGGACTCCTGTATGGGAAGAAGAGTTTACATTTCCGCTGAGAGTCCCCGAGTTGGCTCTGCTTAGAATCGAGGTACATGAATATGACATGTCTGAGAAAGATGACTTTGGTGGCCAAACTTGTCTGCCAATCTCTGAATTGAAACAAGGAATTCATGCACTCCCACTCTTTAACCGAAAAGGAGAAAAATACAACTCAGTGAGGCTTCTAATGCGATTTGAGTTCACCTGA

Protein Analysis

589

Amino Acids

67.35

Weight (kDa)

6.08

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC-X PF00388 112 - 254 1.6e-53 Phosphatidylinositol-specific phospholipase C, X domain
PI-PLC-Y PF00387 355 - 441 2e-28 Phosphatidylinositol-specific phospholipase C, Y domain
C2 PF00168 460 - 562 3e-13 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 868, 976
AccB1I GGYRCC 1 cut(s) 219
AccB7I CCANNNNNTGG 1 cut(s) 1016
AccII CGCG 1 cut(s) 170
AciI CCGC 4 cut(s) 120, 165, 1193, 1571
AclWI GGATC 3 cut(s) 53, 988, 1343
AcoI YGGCCR 2 cut(s) 476, 1648
AcsI RAATTY 2 cut(s) 481, 1686
AcuI CTGAAG 2 cut(s) 461, 755
AcyI GRCGYC 1 cut(s) 1060
AfaI GTAC 4 cut(s) 95, 776, 895, 1611
AfiI CCNNNNNNNGG 4 cut(s) 105, 1016, 1199, 1588
AflIII ACRYGT 1 cut(s) 1623
AgsI TTSAA 7 cut(s) 556, 614, 709, 1088, 1174, 1426, 1678
AjiI CACGTC 1 cut(s) 73
AjnI CCWGG 2 cut(s) 318, 1469
AluBI AGCT 5 cut(s) 130, 466, 641, 655, 1496
AluI AGCT 5 cut(s) 130, 466, 641, 655, 1496
Alw21I GWGCWC 1 cut(s) 1219
Alw26I GTCTC 1 cut(s) 354
AlwI GGATC 3 cut(s) 53, 988, 1343
AlwNI CAGNNNCTG 3 cut(s) 56, 208, 968
Ama87I CYCGRG 1 cut(s) 1583
AoxI GGCC 3 cut(s) 183, 476, 1648
ApeKI GCWGC 4 cut(s) 127, 208, 655, 1094
ApoI RAATTY 2 cut(s) 481, 1686
AspLEI GCGC 2 cut(s) 170, 252
AspS9I GGNCC 2 cut(s) 108, 519
AsuHPI GGTGA 6 cut(s) 611, 714, 1120, 1399, 1443, 1753
AvaI CYCGRG 1 cut(s) 1583
AvaII GGWCC 2 cut(s) 108, 519
BalI TGGCCA 2 cut(s) 478, 1650
BanI GGYRCC 1 cut(s) 219
BbsI GAAGAC 3 cut(s) 273, 671, 1382
Bbv12I GWGCWC 1 cut(s) 1219
BbvI GCAGC 4 cut(s) 139, 195, 642, 1081
BccI CCATC 2 cut(s) 1216, 1400
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 2 cut(s) 320, 1471
BcoDI GTCTC 1 cut(s) 354
BfmI CTRYAG 3 cut(s) 209, 412, 861
BfuAI ACCTGC 2 cut(s) 868, 976
BglII AGATCT 1 cut(s) 730
BisI GCNGC 6 cut(s) 128, 166, 209, 656, 1095, 1193
BlpI GCTNAGC 1 cut(s) 57
BlsI GCNGC 6 cut(s) 129, 167, 210, 657, 1096, 1194
Bme1390I CCNGG 2 cut(s) 320, 1471
Bme18I GGWCC 2 cut(s) 108, 519
BmeT110I CYCGRG 1 cut(s) 1583
BmgBI CACGTC 1 cut(s) 73
BmgT120I GGNCC 2 cut(s) 108, 519
BmiI GGNNCC 3 cut(s) 109, 110, 221
BmrFI CCNGG 2 cut(s) 320, 1471
BmsI GCATC 4 cut(s) 195, 980, 1197, 1257
BoxI GACNNNNGTC 1 cut(s) 414
BpiI GAAGAC 3 cut(s) 273, 671, 1382
BpmI CTGGAG 2 cut(s) 164, 934
Bpu10I CCTNAGC 1 cut(s) 131
Bpu1102I GCTNAGC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 800
BsaHI GRCGYC 1 cut(s) 1060
BsaJI CCNNGG 2 cut(s) 99, 1470
BsaWI WCCGGW 1 cut(s) 12
BsaXI ACNNNNNCTCC 6 cut(s) 571, 601, 748, 778, 932, 962
Bsc4I CCNNNNNNNGG 4 cut(s) 105, 1016, 1199, 1588
Bse1I ACTGG 3 cut(s) 373, 394, 951
Bse3DI GCAATG 1 cut(s) 228
BseBI CCWGG 2 cut(s) 320, 1471
BseDI CCNNGG 2 cut(s) 99, 1470
BseGI GGATG 7 cut(s) 21, 154, 499, 1212, 1281, 1301, 1537
BseLI CCNNNNNNNGG 4 cut(s) 105, 1016, 1199, 1588
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 7 cut(s) 48, 145, 415, 1232, 1565, 1620, 1746
BseNI ACTGG 3 cut(s) 373, 394, 951
BseRI GAGGAG 1 cut(s) 1168
BseXI GCAGC 4 cut(s) 139, 195, 642, 1081
BseYI CCCAGC 1 cut(s) 1001
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 3 cut(s) 185, 478, 1650
BshNI GGYRCC 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 1219
BsiHKCI CYCGRG 1 cut(s) 1583
BsiSI CCGG 1 cut(s) 13
BslFI GGGAC 2 cut(s) 121, 1565
BslI CCNNNNNNNGG 4 cut(s) 105, 1016, 1199, 1588
BsmAI GTCTC 1 cut(s) 354
BsmFI GGGAC 2 cut(s) 121, 1565
BsmI GAATGC 1 cut(s) 343
BsnI GGCC 3 cut(s) 185, 478, 1650
BsoBI CYCGRG 1 cut(s) 1583
Bsp1286I GDGCHC 1 cut(s) 1219
Bsp1720I GCTNAGC 1 cut(s) 57
BspACI CCGC 4 cut(s) 120, 165, 1193, 1571
BspANI GGCC 3 cut(s) 185, 478, 1650
BspCNI CTCAG 7 cut(s) 49, 144, 414, 1231, 1566, 1621, 1745
BspFNI CGCG 1 cut(s) 170
BspHI TCATGA 2 cut(s) 660, 1326
BspLI GGNNCC 3 cut(s) 109, 110, 221
BspMAI CTGCAG 3 cut(s) 213, 416, 865
BspMI ACCTGC 2 cut(s) 868, 976
BspPI GGATC 3 cut(s) 53, 988, 1343
BspT107I GGYRCC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 228
BsrI ACTGG 3 cut(s) 373, 394, 951
BssECI CCNNGG 2 cut(s) 99, 1470
BssNI GRCGYC 1 cut(s) 1060
Bst2UI CCWGG 2 cut(s) 320, 1471
Bst4CI ACNGT 1 cut(s) 1369
Bst6I CTCTTC 3 cut(s) 209, 437, 1551
BstACI GRCGYC 1 cut(s) 1060
BstAPI GCANNNNNTGC 2 cut(s) 208, 968
BstC8I GCNNGC 2 cut(s) 254, 573
BstF5I GGATG 7 cut(s) 21, 154, 499, 1212, 1281, 1301, 1537
BstFNI CGCG 1 cut(s) 170
BstHHI GCGC 2 cut(s) 170, 252
BstMAI GTCTC 1 cut(s) 354
BstMWI GCNNNNNNNGC 9 cut(s) 33, 95, 165, 208, 217, 647, 968, 998, 1747
BstNI CCWGG 2 cut(s) 320, 1471
BstNSI RCATGY 2 cut(s) 575, 1627
BstPAI GACNNNNGTC 1 cut(s) 414
BstSCI CCNGG 2 cut(s) 318, 1469
BstSFI CTRYAG 3 cut(s) 209, 412, 861
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 4 cut(s) 139, 195, 642, 1081
BstV2I GAAGAC 3 cut(s) 273, 671, 1382
BstX2I RGATCY 1 cut(s) 730
BstYI RGATCY 1 cut(s) 730
BsuRI GGCC 3 cut(s) 185, 478, 1650
BtrI CACGTC 1 cut(s) 73
BtsCI GGATG 7 cut(s) 21, 154, 499, 1212, 1281, 1301, 1537
BtsIMutI CAGTG 2 cut(s) 437, 1740
BveI ACCTGC 2 cut(s) 868, 976
Cac8I GCNNGC 2 cut(s) 254, 573
CaiI CAGNNNCTG 3 cut(s) 56, 208, 968
CciI TCATGA 2 cut(s) 660, 1326
CfoI GCGC 2 cut(s) 170, 252
Cfr13I GGNCC 2 cut(s) 108, 519
CseI GACGC 2 cut(s) 159, 1068
CsiI ACCWGGT 1 cut(s) 318
Csp6I GTAC 4 cut(s) 94, 775, 894, 1610
CspCI CAANNNNNGTGG 2 cut(s) 516, 551
CviQI GTAC 4 cut(s) 94, 775, 894, 1610
DraI TTTAAA 2 cut(s) 1023, 1383
EaeI YGGCCR 2 cut(s) 476, 1648
Eam1104I CTCTTC 3 cut(s) 209, 437, 1551
EarI CTCTTC 3 cut(s) 209, 437, 1551
Eco47I GGWCC 2 cut(s) 108, 519
Eco57I CTGAAG 2 cut(s) 461, 755
Eco88I CYCGRG 1 cut(s) 1583
EcoO109I RGGNCCY 2 cut(s) 108, 519
EcoRI GAATTC 1 cut(s) 1686
EcoRII CCWGG 2 cut(s) 318, 1469
EcoT22I ATGCAT 2 cut(s) 1212, 1272
FalI AAGNNNNNCTT 4 cut(s) 606, 638, 762, 794
FaqI GGGAC 2 cut(s) 121, 1565
Fnu4HI GCNGC 6 cut(s) 128, 166, 209, 656, 1095, 1193
FokI GGATG 7 cut(s) 28, 161, 506, 1219, 1288, 1308, 1544
Fsp4HI GCNGC 6 cut(s) 128, 166, 209, 656, 1095, 1193
GlaI GCGC 2 cut(s) 169, 251
GluI GCNGC 6 cut(s) 128, 166, 209, 656, 1095, 1193
GsaI CCCAGC 1 cut(s) 1005
GsuI CTGGAG 2 cut(s) 164, 934
HaeIII GGCC 3 cut(s) 185, 478, 1650
HapII CCGG 1 cut(s) 13
HgaI GACGC 2 cut(s) 159, 1068
HhaI GCGC 2 cut(s) 170, 252
Hin1I GRCGYC 1 cut(s) 1060
Hin6I GCGC 2 cut(s) 168, 250
HinP1I GCGC 2 cut(s) 168, 250
HinfI GANTC 6 cut(s) 584, 695, 1053, 1540, 1578, 1602
HpaII CCGG 1 cut(s) 13
HphI GGTGA 6 cut(s) 611, 714, 1120, 1399, 1443, 1753
Hpy166II GTNNAC 5 cut(s) 917, 1076, 1128, 1563, 1761
Hpy188I TCNGA 8 cut(s) 70, 181, 700, 735, 1058, 1221, 1630, 1672
Hpy8I GTNNAC 5 cut(s) 917, 1076, 1128, 1563, 1761
Hpy99I CGWCG 2 cut(s) 74, 175
HpyAV CCTTC 3 cut(s) 75, 510, 729
HpyCH4III ACNGT 1 cut(s) 1369
HpyCH4IV ACGT 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 9 cut(s) 33, 95, 165, 208, 217, 647, 968, 998, 1747
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 1060
HspAI GCGC 2 cut(s) 168, 250
KflI GGGWCCC 1 cut(s) 108
LmnI GCTCC 4 cut(s) 199, 346, 463, 959
Lsp1109I GCAGC 4 cut(s) 139, 195, 642, 1081
LweI GCATC 4 cut(s) 195, 980, 1197, 1257
MabI ACCWGGT 1 cut(s) 318
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 3 cut(s) 8, 73, 407
MflI RGATCY 1 cut(s) 730
MhlI GDGCHC 1 cut(s) 1219
MlsI TGGCCA 2 cut(s) 478, 1650
MluCI AATT 8 cut(s) 376, 481, 561, 713, 987, 1361, 1673, 1686
MluNI TGGCCA 2 cut(s) 478, 1650
MlyI GAGTC 3 cut(s) 1062, 1534, 1587
MmeI TCCRAC 3 cut(s) 93, 1184, 1206
Mox20I TGGCCA 2 cut(s) 478, 1650
Mph1103I ATGCAT 2 cut(s) 1212, 1272
MscI TGGCCA 2 cut(s) 478, 1650
MseI TTAA 9 cut(s) 546, 564, 672, 1022, 1035, 1145, 1233, 1382, 1707
MslI CAYNNNNRTG 2 cut(s) 885, 1617
Msp20I TGGCCA 2 cut(s) 478, 1650
MspA1I CMGCKG 2 cut(s) 1496, 1573
MspI CCGG 1 cut(s) 13
MspR9I CCNGG 2 cut(s) 320, 1471
Mva1269I GAATGC 1 cut(s) 343
MvaI CCWGG 2 cut(s) 320, 1471
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 9 cut(s) 33, 95, 165, 208, 217, 647, 968, 998, 1747
NlaIV GGNNCC 3 cut(s) 109, 110, 221
NmeAIII GCCGAG 3 cut(s) 124, 148, 211
NmuCI GTSAC 2 cut(s) 73, 407
NsiI ATGCAT 2 cut(s) 1212, 1272
NspI RCATGY 2 cut(s) 575, 1627
PaeI GCATGC 1 cut(s) 575
PagI TCATGA 2 cut(s) 660, 1326
PciI ACATGT 1 cut(s) 1623
PctI GAATGC 1 cut(s) 343
PfeI GAWTC 3 cut(s) 584, 695, 1602
PflMI CCANNNNNTGG 1 cut(s) 1016
PkrI GCNGC 6 cut(s) 129, 167, 210, 657, 1096, 1194
PleI GAGTC 3 cut(s) 1061, 1534, 1586
PpsI GAGTC 3 cut(s) 1061, 1534, 1586
PpuMI RGGWCCY 2 cut(s) 108, 519
PscI ACATGT 1 cut(s) 1623
PshAI GACNNNNGTC 1 cut(s) 414
Psp5II RGGWCCY 2 cut(s) 108, 519
Psp6I CCWGG 2 cut(s) 318, 1469
PspFI CCCAGC 1 cut(s) 1001
PspGI CCWGG 2 cut(s) 318, 1469
PspN4I GGNNCC 3 cut(s) 109, 110, 221
PspPI GGNCC 2 cut(s) 108, 519
PspPPI RGGWCCY 2 cut(s) 108, 519
PstI CTGCAG 3 cut(s) 213, 416, 865
PstNI CAGNNNCTG 3 cut(s) 56, 208, 968
PsuI RGATCY 1 cut(s) 730
PvuII CAGCTG 1 cut(s) 1496
RsaI GTAC 4 cut(s) 95, 776, 895, 1611
RsaNI GTAC 4 cut(s) 94, 775, 894, 1610
RseI CAYNNNNRTG 2 cut(s) 885, 1617
SaqAI TTAA 9 cut(s) 546, 564, 672, 1022, 1035, 1145, 1233, 1382, 1707
SatI GCNGC 6 cut(s) 128, 166, 209, 656, 1095, 1193
Sau96I GGNCC 2 cut(s) 108, 519
SchI GAGTC 3 cut(s) 1062, 1534, 1587
ScrFI CCNGG 2 cut(s) 320, 1471
SduI GDGCHC 1 cut(s) 1219
SexAI ACCWGGT 1 cut(s) 318
SfaNI GCATC 4 cut(s) 195, 980, 1197, 1257
SfcI CTRYAG 3 cut(s) 209, 412, 861
SinI GGWCC 2 cut(s) 108, 519
SmiMI CAYNNNNRTG 2 cut(s) 885, 1617
SmlI CTYRAG 1 cut(s) 779
SmoI CTYRAG 1 cut(s) 779
SphI GCATGC 1 cut(s) 575
Sse9I AATT 8 cut(s) 376, 481, 561, 713, 987, 1361, 1673, 1686
SsiI CCGC 4 cut(s) 120, 165, 1193, 1571
StyD4I CCNGG 2 cut(s) 318, 1469
TaaI ACNGT 1 cut(s) 1369
TaiI ACGT 1 cut(s) 75
TaqI TCGA 5 cut(s) 173, 742, 1051, 1347, 1605
TasI AATT 8 cut(s) 376, 481, 561, 713, 987, 1361, 1673, 1686
TauI GCSGC 2 cut(s) 168, 1195
TfiI GAWTC 3 cut(s) 584, 695, 1602
Tru1I TTAA 9 cut(s) 546, 564, 672, 1022, 1035, 1145, 1233, 1382, 1707
Tru9I TTAA 9 cut(s) 546, 564, 672, 1022, 1035, 1145, 1233, 1382, 1707
TscAI CASTG 2 cut(s) 444, 1740
TseFI GTSAC 2 cut(s) 73, 407
TseI GCWGC 4 cut(s) 127, 208, 655, 1094
Tsp45I GTSAC 2 cut(s) 73, 407
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 2 cut(s) 444, 1740
Van91I CCANNNNNTGG 1 cut(s) 1016
VpaK11BI GGWCC 2 cut(s) 108, 519
XapI RAATTY 2 cut(s) 481, 1686
XceI RCATGY 2 cut(s) 575, 1627
Zsp2I ATGCAT 2 cut(s) 1212, 1272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.