Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000738.1

Orthogroup ID

OG0007017

Physical Location & Seq

Genomic Coordinates Reverse (-)

159787 .. 163032

Gene Structure 3246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000738.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atggggagttaccggatgtgcgtctgcttcactcgcaagttcaggatcaccgaggcagagcctccctctgacgtgacggagtacttcgctaagtacgccgagggagggacccacatgaccgctgagcagctcaggaacttcctggcggatgtccagggctacggcggggcgtcgacctcggacgccgagcggatcgtggagcaggtgttgcagaagaggcaccatcacattgccaagttgataacaaggcgcacgctcactctagaagacttccaccattacttgttctccgccgatctcaaccctccaatcgaaaaccaggttcatcaggatatgaatgctccattgtctcattactacatatatactggacataattcatacctgactggaaatcaactcagtagtgactgtagtcatgtgccaatcataaaggcgctgaagagaggtgtgagagtggtggagcttgatctttggccaaattccaaaaaggatgatgttaatgttcttcatggaaggaccttgacaacccctgtggagcttgttaaatgcttgaaatcaattaaggagcatgcttttactgattctccataccctggatatggtaaatctctttggctgatgcatgggatgtttagagcaaatgggggctgtggttatgtgaaaaagcctgattttgttatgaacgataagcagattttcgatcctaaagcaaaattgccagtaaagaagactttaaaggtgaaagtatatatgggagatggttggcatctggatttcaaacaaacacactttgatttatattcaccaccagatttttacaccagggtcggcatagcaggagttccagctgatgaggtaatgaataaaactaagaaaaaagaggacgattggactcctgtatgggaagaagagtttacatttccattgagagccccagagttggctctgcttagaattgaggtacatgaatatgacatgtctgagaaagatgactttggcggccagacttgtctgccagtctctgaattgagacaaggaattcgtgcagtccctctctttgaccgtaaaggagtgaaatacaactcagtgaggcttctaatgcgatttgagttcacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04020 ko04070 ko04919 ko04933 map00562 map01100 map04020 map04070 map04919 map04933

Pfam Domains

Protein Families

C2 EF-hand_like PI-PLC-X PI-PLC-Y

Protein Analysis

373

Amino Acids

42.87

Weight (kDa)

7.69

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58690 AT5G58690 AT5G58690 AT5G58700 AT5G58700 AT5G58700
fragaria_vesca	FvH4_3g38660
malus_domestica	MD03G1069000.v1.1
prunus_persica	Prupe.6G056800_v2.0.a1 Prupe.6G056800_v2.0.a1 Prupe.6G056900_v2.0.a1 Prupe.6G056900_v2.0.a1 Prupe.6G056900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0069691
rosa_laevigata	RLG00000036086
rosa_multiflora	Rmu_co8457285.1_g000001 Rmu_sc0000738.1_g000034 Rmu_sc0007688.1_g000005
rosa_roxburghii	Rroxscaffold_1G00011380
rosa_rugosa	Rorug05G0399200
rosa_samantha	Rh5AG456200 Rh5BG475200 Rh5CG498800 Rh5DG486600
rosa_wichuraiana	Rw5G042560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	193
Acc36I	ACCTGC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	219
AccB7I	CCANNNNNTGG	1 cut(s)	596
AccBSI	CCGCTC	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	173
AciI	CCGC	6 cut(s)	120, 146, 165, 190, 291, 1002
AclWI	GGATC	3 cut(s)	53, 200, 698
AcoI	YGGCCR	2 cut(s)	476, 1003
AcsI	RAATTY	2 cut(s)	481, 1041
AcuI	CTGAAG	1 cut(s)	461
AcyI	GRCGYC	2 cut(s)	170, 183
AfaI	GTAC	3 cut(s)	83, 95, 966
AfiI	CCNNNNNNNGG	4 cut(s)	105, 596, 602, 943
AflIII	ACRYGT	1 cut(s)	978
AgsI	TTSAA	2 cut(s)	556, 781
AjiI	CACGTC	1 cut(s)	73
AjnI	CCWGG	5 cut(s)	141, 153, 318, 595, 824
AluBI	AGCT	4 cut(s)	130, 466, 541, 851
AluI	AGCT	4 cut(s)	130, 466, 541, 851
Alw26I	GTCTC	3 cut(s)	354, 1027, 1027
AlwI	GGATC	3 cut(s)	53, 200, 698
AlwNI	CAGNNNCTG	1 cut(s)	1025
AoxI	GGCC	2 cut(s)	476, 1003
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	2 cut(s)	481, 1041
ArsI	GACNNNNNNTTYG	2 cut(s)	1026, 1058
AspLEI	GCGC	2 cut(s)	252, 439
AspS9I	GGNCC	2 cut(s)	108, 519
AsuHPI	GGTGA	4 cut(s)	40, 754, 798, 1108
AvaII	GGWCC	2 cut(s)	108, 519
BalI	TGGCCA	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	937
BbsI	GAAGAC	2 cut(s)	273, 737
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	2 cut(s)	231, 755
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	5 cut(s)	143, 155, 320, 597, 826
BcoDI	GTCTC	3 cut(s)	354, 1027, 1027
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	412
BfoI	RGCGCY	1 cut(s)	440
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	2 cut(s)	128, 1003
BlpI	GCTNAGC	1 cut(s)	123
BlsI	GCNGC	2 cut(s)	129, 1004
BmcAI	AGTACT	1 cut(s)	83
Bme1390I	CCNGG	5 cut(s)	143, 155, 320, 597, 826
Bme18I	GGWCC	2 cut(s)	108, 519
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	108, 519
BmiI	GGNNCC	3 cut(s)	109, 110, 221
BmrFI	CCNGG	5 cut(s)	143, 155, 320, 597, 826
BmsI	GCATC	2 cut(s)	612, 778
BoxI	GACNNNNGTC	1 cut(s)	414
BpiI	GAAGAC	2 cut(s)	273, 737
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
Bpu10I	CCTNAGC	1 cut(s)	131
Bpu1102I	GCTNAGC	1 cut(s)	123
BsaHI	GRCGYC	2 cut(s)	170, 183
BsaJI	CCNNGG	6 cut(s)	51, 99, 154, 177, 595, 825
BsaWI	WCCGGW	1 cut(s)	12
BsaXI	ACNNNNNCTCC	6 cut(s)	191, 221, 272, 302, 571, 601
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 596, 602, 943
Bse1I	ACTGG	4 cut(s)	373, 394, 722, 1019
Bse3DI	GCAATG	1 cut(s)	228
BseBI	CCWGG	5 cut(s)	143, 155, 320, 597, 826
BseDI	CCNNGG	6 cut(s)	51, 99, 154, 177, 595, 825
BseGI	GGATG	4 cut(s)	21, 154, 499, 636
BseLI	CCNNNNNNNGG	4 cut(s)	105, 596, 602, 943
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	5 cut(s)	114, 145, 415, 975, 1101
BseNI	ACTGG	4 cut(s)	373, 394, 722, 1019
BseXI	GCAGC	1 cut(s)	139
BsgI	GTGCAG	1 cut(s)	1068
BshFI	GGCC	2 cut(s)	478, 1005
BshNI	GGYRCC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	13
BslFI	GGGAC	2 cut(s)	121, 1037
BslI	CCNNNNNNNGG	4 cut(s)	105, 596, 602, 943
BsmAI	GTCTC	3 cut(s)	354, 1027, 1027
BsmFI	GGGAC	2 cut(s)	121, 1037
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	2 cut(s)	478, 1005
Bsp1286I	GDGCHC	1 cut(s)	937
Bsp143I	GATC	5 cut(s)	45, 192, 295, 469, 703
Bsp1720I	GCTNAGC	1 cut(s)	123
BspACI	CCGC	6 cut(s)	120, 146, 165, 190, 291, 1002
BspANI	GGCC	2 cut(s)	478, 1005
BspCNI	CTCAG	5 cut(s)	115, 144, 414, 976, 1100
BspLI	GGNNCC	3 cut(s)	109, 110, 221
BspMI	ACCTGC	1 cut(s)	193
BspPI	GGATC	3 cut(s)	53, 200, 698
BspT107I	GGYRCC	1 cut(s)	219
BsrBI	CCGCTC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	228
BsrI	ACTGG	4 cut(s)	373, 394, 722, 1019
BssECI	CCNNGG	6 cut(s)	51, 99, 154, 177, 595, 825
BssMI	GATC	5 cut(s)	45, 192, 295, 469, 703
BssNI	GRCGYC	2 cut(s)	170, 183
Bst2UI	CCWGG	5 cut(s)	143, 155, 320, 597, 826
Bst4CI	ACNGT	2 cut(s)	413, 1067
Bst6I	CTCTTC	3 cut(s)	209, 437, 906
BstACI	GRCGYC	2 cut(s)	170, 183
BstAPI	GCANNNNNTGC	1 cut(s)	208
BstC8I	GCNNGC	2 cut(s)	254, 573
BstDEI	CTNAG	8 cut(s)	90, 123, 131, 401, 873, 953, 984, 1087
BstF5I	GGATG	4 cut(s)	21, 154, 499, 636
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	2 cut(s)	252, 439
BstKTI	GATC	5 cut(s)	48, 195, 298, 472, 706
BstMAI	GTCTC	3 cut(s)	354, 1027, 1027
BstMBI	GATC	5 cut(s)	45, 192, 295, 469, 703
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 95, 208, 217, 1102
BstNI	CCWGG	5 cut(s)	143, 155, 320, 597, 826
BstNSI	RCATGY	2 cut(s)	575, 982
BstPAI	GACNNNNGTC	1 cut(s)	414
BstSCI	CCNGG	5 cut(s)	141, 153, 318, 595, 824
BstSFI	CTRYAG	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	139
BstV2I	GAAGAC	2 cut(s)	273, 737
BsuRI	GGCC	2 cut(s)	478, 1005
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	4 cut(s)	21, 154, 499, 636
BtsIMutI	CAGTG	1 cut(s)	1095
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	254, 573
CaiI	CAGNNNCTG	1 cut(s)	1025
CfoI	GCGC	2 cut(s)	252, 439
Cfr13I	GGNCC	2 cut(s)	108, 519
CseI	GACGC	3 cut(s)	10, 159, 191
CsiI	ACCWGGT	1 cut(s)	318
Csp6I	GTAC	3 cut(s)	82, 94, 965
CspCI	CAANNNNNGTGG	2 cut(s)	516, 551
CviAII	CATG	7 cut(s)	115, 419, 512, 572, 626, 968, 979
CviQI	GTAC	3 cut(s)	82, 94, 965
DdeI	CTNAG	8 cut(s)	90, 123, 131, 401, 873, 953, 984, 1087
DpnI	GATC	5 cut(s)	47, 194, 297, 471, 705
DpnII	GATC	5 cut(s)	45, 192, 295, 469, 703
DraI	TTTAAA	1 cut(s)	738
EaeI	YGGCCR	2 cut(s)	476, 1003
Eam1104I	CTCTTC	3 cut(s)	209, 437, 906
EarI	CTCTTC	3 cut(s)	209, 437, 906
EciI	GGCGGA	2 cut(s)	161, 280
Eco24I	GRGCYC	1 cut(s)	937
Eco47I	GGWCC	2 cut(s)	108, 519
Eco57I	CTGAAG	1 cut(s)	461
EcoO109I	RGGNCCY	2 cut(s)	108, 519
EcoRI	GAATTC	1 cut(s)	1041
EcoRII	CCWGG	5 cut(s)	141, 153, 318, 595, 824
EcoT22I	ATGCAT	1 cut(s)	627
EcoT38I	GRGCYC	1 cut(s)	937
FaeI	CATG	7 cut(s)	118, 422, 515, 575, 629, 971, 982
FaqI	GGGAC	2 cut(s)	121, 1037
FatI	CATG	7 cut(s)	114, 418, 511, 571, 625, 967, 978
FauI	CCCGC	1 cut(s)	158
FblI	GTMKAC	1 cut(s)	173
Fnu4HI	GCNGC	2 cut(s)	128, 1003
FokI	GGATG	4 cut(s)	28, 161, 506, 643
FriOI	GRGCYC	1 cut(s)	937
Fsp4HI	GCNGC	2 cut(s)	128, 1003
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	2 cut(s)	251, 438
GluI	GCNGC	2 cut(s)	128, 1003
HaeII	RGCGCY	1 cut(s)	440
HaeIII	GGCC	2 cut(s)	478, 1005
HapII	CCGG	1 cut(s)	13
HgaI	GACGC	3 cut(s)	10, 159, 191
HhaI	GCGC	2 cut(s)	252, 439
Hin1I	GRCGYC	2 cut(s)	170, 183
Hin1II	CATG	7 cut(s)	118, 422, 515, 575, 629, 971, 982
Hin6I	GCGC	2 cut(s)	250, 437
HinP1I	GCGC	2 cut(s)	250, 437
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	2 cut(s)	584, 895
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	4 cut(s)	40, 754, 798, 1108
Hpy166II	GTNNAC	3 cut(s)	174, 918, 1116
Hpy188I	TCNGA	4 cut(s)	70, 181, 985, 1027
Hpy188III	TCNNGA	5 cut(s)	43, 133, 263, 329, 773
Hpy8I	GTNNAC	3 cut(s)	174, 918, 1116
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	510
HpyCH4III	ACNGT	2 cut(s)	413, 1067
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	3 cut(s)	211, 625, 1049
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 95, 208, 217, 1102
HpyF3I	CTNAG	8 cut(s)	90, 123, 131, 401, 873, 953, 984, 1087
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	2 cut(s)	170, 183
Hsp92II	CATG	7 cut(s)	118, 422, 515, 575, 629, 971, 982
HspAI	GCGC	2 cut(s)	250, 437
KflI	GGGWCCC	1 cut(s)	108
Kzo9I	GATC	5 cut(s)	45, 192, 295, 469, 703
LmnI	GCTCC	5 cut(s)	199, 346, 463, 538, 568
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	2 cut(s)	612, 778
MabI	ACCWGGT	1 cut(s)	318
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	3 cut(s)	8, 73, 407
MalI	GATC	5 cut(s)	47, 194, 297, 471, 705
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	5 cut(s)	45, 192, 295, 469, 703
MboII	GAAGA	7 cut(s)	226, 278, 454, 500, 742, 920, 923
MhlI	GDGCHC	1 cut(s)	937
MlsI	TGGCCA	1 cut(s)	478
MluCI	AATT	7 cut(s)	376, 481, 561, 716, 957, 1028, 1041
MluNI	TGGCCA	1 cut(s)	478
MlyI	GAGTC	1 cut(s)	889
Mox20I	TGGCCA	1 cut(s)	478
Mph1103I	ATGCAT	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	478
MseI	TTAA	4 cut(s)	501, 546, 564, 737
MslI	CAYNNNNRTG	1 cut(s)	972
Msp20I	TGGCCA	1 cut(s)	478
MspA1I	CMGCKG	2 cut(s)	122, 851
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	5 cut(s)	143, 155, 320, 597, 826
Mva1269I	GAATGC	1 cut(s)	343
MvaI	CCWGG	5 cut(s)	143, 155, 320, 597, 826
MwoI	GCNNNNNNNGC	5 cut(s)	33, 95, 208, 217, 1102
NdeII	GATC	5 cut(s)	45, 192, 295, 469, 703
NlaIII	CATG	7 cut(s)	118, 422, 515, 575, 629, 971, 982
NlaIV	GGNNCC	3 cut(s)	109, 110, 221
NmeAIII	GCCGAG	2 cut(s)	124, 211
NmuCI	GTSAC	2 cut(s)	73, 407
NsiI	ATGCAT	1 cut(s)	627
NspI	RCATGY	2 cut(s)	575, 982
PaeI	GCATGC	1 cut(s)	575
PaqCI	CACCTGC	1 cut(s)	193
PciI	ACATGT	1 cut(s)	978
PctI	GAATGC	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	584
PflMI	CCANNNNNTGG	1 cut(s)	596
PkrI	GCNGC	2 cut(s)	129, 1004
PleI	GAGTC	1 cut(s)	889
PpsI	GAGTC	1 cut(s)	889
PpuMI	RGGWCCY	2 cut(s)	108, 519
PscI	ACATGT	1 cut(s)	978
PshAI	GACNNNNGTC	1 cut(s)	414
Psp5II	RGGWCCY	2 cut(s)	108, 519
Psp6I	CCWGG	5 cut(s)	141, 153, 318, 595, 824
PspGI	CCWGG	5 cut(s)	141, 153, 318, 595, 824
PspN4I	GGNNCC	3 cut(s)	109, 110, 221
PspPI	GGNCC	2 cut(s)	108, 519
PspPPI	RGGWCCY	2 cut(s)	108, 519
PstNI	CAGNNNCTG	1 cut(s)	1025
PvuII	CAGCTG	1 cut(s)	851
RsaI	GTAC	3 cut(s)	83, 95, 966
RsaNI	GTAC	3 cut(s)	82, 94, 965
RseI	CAYNNNNRTG	1 cut(s)	972
SalI	GTCGAC	1 cut(s)	172
SaqAI	TTAA	4 cut(s)	501, 546, 564, 737
SatI	GCNGC	2 cut(s)	128, 1003
Sau3AI	GATC	5 cut(s)	45, 192, 295, 469, 703
Sau96I	GGNCC	2 cut(s)	108, 519
ScaI	AGTACT	1 cut(s)	83
SchI	GAGTC	1 cut(s)	889
ScrFI	CCNGG	5 cut(s)	143, 155, 320, 597, 826
SduI	GDGCHC	1 cut(s)	937
SexAI	ACCWGGT	1 cut(s)	318
SfaNI	GCATC	2 cut(s)	612, 778
SfcI	CTRYAG	1 cut(s)	412
SinI	GGWCC	2 cut(s)	108, 519
SmiMI	CAYNNNNRTG	1 cut(s)	972
SphI	GCATGC	1 cut(s)	575
Sse9I	AATT	7 cut(s)	376, 481, 561, 716, 957, 1028, 1041
SsiI	CCGC	6 cut(s)	120, 146, 165, 190, 291, 1002
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	5 cut(s)	141, 153, 318, 595, 824
TaaI	ACNGT	2 cut(s)	413, 1067
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	3 cut(s)	173, 312, 702
TasI	AATT	7 cut(s)	376, 481, 561, 716, 957, 1028, 1041
TatI	WGTACW	1 cut(s)	81
TauI	GCSGC	1 cut(s)	1005
TfiI	GAWTC	1 cut(s)	584
Tru1I	TTAA	4 cut(s)	501, 546, 564, 737
Tru9I	TTAA	4 cut(s)	501, 546, 564, 737
TscAI	CASTG	1 cut(s)	1095
TseFI	GTSAC	2 cut(s)	73, 407
TseI	GCWGC	1 cut(s)	127
Tsp45I	GTSAC	2 cut(s)	73, 407
TspDTI	ATGAA	7 cut(s)	314, 350, 369, 500, 698, 878, 984
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	1095
Van91I	CCANNNNNTGG	1 cut(s)	596
VpaK11BI	GGWCC	2 cut(s)	108, 519
XapI	RAATTY	2 cut(s)	481, 1041
XbaI	TCTAGA	1 cut(s)	262
XceI	RCATGY	2 cut(s)	575, 982
XmiI	GTMKAC	1 cut(s)	173
XspI	CTAG	1 cut(s)	263
ZrmI	AGTACT	1 cut(s)	83
Zsp2I	ATGCAT	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.