AT5G58900
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013839
Physical Location & Seq
Reverse (-)
23783102 .. 23785512
2411 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58900.1

Sequence Viewer

Length: 867 bp
ATGGAGGTTATGAGACCGTCGACGTCACACGTGTCAGGTGGGAACTGGCTCATGGAGGAAACTAAGAGCGGCGTCGCAGCTTCTGGTGAAGGTGCCACGTGGACGGCGGCAGAGAACAAGGCATTCGAGAATGCTTTGGCGGTTTACGACGACAACACTCCTGATCGGTGGCAGAAGGTGGCTGCGGTGATTCCGGGGAAGACAGTGAGTGACGTAATTAGACAGTATAACGATTTGGAAGCTGATGTCAGCAGCATCGAGGCCGGTTTAATCCCGGTCCCCGGTTACATCACCTCGCCGCCTTTCACTCTAGATTGGGCCGGCGGCGGTGGCGGATGTAACGGGTTTAAACCGGGTCATCAGGTTTGTAATAAACGGTCGCAGGCCGGTAGATCGCCGGAGCTGGAGCGGAAGAAAGGCGTTCCTTGGACGGAGGAAGAACACAAGCTATTTCTAATGGGTTTGAAGAAATATGGGAAAGGAGATTGGAGAAACATATCTCGGAACTTTGTGATAACGCGAACGCCAACACAAGTAGCTAGCCACGCCCAAAAGTACTTCATCCGGCAACTTTCCGGCGGCAAGGACAAGAGACGAGCAAGCATTCACGACATAACCACCGTAAATCTCGAAGAGGAGGCTTCTTTGGAGACCAATAAGAGCTCCATTGTTGTTGGAGATCAGCGTTCAAGGCTAACCGCGTTTCCTTGGAACCAAACGGACAACAATGGAACACAGGCAGACGCTTTCAATATAACGATTGGAAACGCTATTAGTGGCGTTCATTCATACGGCCAGGTTATGATTGGAGGGTATAACAATGCAGATTCTTGCTATGACGCCCAAAACACAATGTTTCAACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

288

Amino Acids

31.49

Weight (kDa)

6.32

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 33 - 78 9.9e-06 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 141 - 187 3.7e-13 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013839)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58900
fragaria_vesca FvH4_3g38150
malus_domestica MD03G1076200.v1.1 MD11G1080800.v1.1
prunus_persica Prupe.6G061100_v2.0.a1
pyrus_communis pycom03g06050 pycom11g06890
rosa_chinensis RchiOBHm_Chr5g0068581
rosa_laevigata RLG00000035982
rosa_multiflora Rmu_sc0004721.1_g000002
rosa_roxburghii Rroxscaffold_1G00012280
rosa_rugosa Rorug05G0391600
rosa_samantha Rh5AG449300 Rh5BG467500 Rh5CG489300 Rh5DG480900
rosa_wichuraiana Rw5G041950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 92
AccBSI CCGCTC 2 cut(s) 69, 409
AccI GTMKAC 1 cut(s) 20
AccII CGCG 2 cut(s) 520, 701
AcoI YGGCCR 1 cut(s) 793
AcvI CACGTG 2 cut(s) 31, 99
AcyI GRCGYC 3 cut(s) 23, 72, 840
AfaI GTAC 1 cut(s) 557
AfiI CCNNNNNNNGG 1 cut(s) 281
AflIII ACRYGT 2 cut(s) 28, 30
AgsI TTSAA 4 cut(s) 466, 690, 751, 860
AjnI CCWGG 1 cut(s) 795
AluBI AGCT 6 cut(s) 80, 242, 403, 448, 539, 663
AluI AGCT 6 cut(s) 80, 242, 403, 448, 539, 663
Alw21I GWGCWC 1 cut(s) 665
Alw26I GTCTC 3 cut(s) 7, 586, 644
AlwNI CAGNNNCTG 1 cut(s) 83
AoxI GGCC 4 cut(s) 261, 318, 384, 793
ApeKI GCWGC 3 cut(s) 77, 182, 252
AspS9I GGNCC 2 cut(s) 277, 318
AsuC2I CCSGG 4 cut(s) 195, 275, 282, 354
AsuHPI GGTGA 3 cut(s) 98, 199, 283
AsuNHI GCTAGC 1 cut(s) 539
AvaII GGWCC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 665
BbrPI CACGTG 2 cut(s) 31, 99
BbsI GAAGAC 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 665
BbvI GCAGC 3 cut(s) 89, 169, 264
BceAI ACGGC 2 cut(s) 120, 808
BciT130I CCWGG 1 cut(s) 797
BcnI CCSGG 4 cut(s) 195, 275, 282, 354
BcoDI GTCTC 3 cut(s) 7, 586, 644
BfaI CTAG 2 cut(s) 311, 540
BfmI CTRYAG 1 cut(s) 863
BisI GCNGC 8 cut(s) 70, 78, 108, 183, 253, 299, 325, 580
BlsI GCNGC 8 cut(s) 71, 79, 109, 184, 254, 300, 326, 581
BmcAI AGTACT 1 cut(s) 557
Bme1390I CCNGG 5 cut(s) 195, 275, 282, 354, 797
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 2 cut(s) 277, 318
BmiI GGNNCC 3 cut(s) 94, 279, 713
BmrFI CCNGG 5 cut(s) 195, 275, 282, 354, 797
BmsI GCATC 1 cut(s) 264
BmtI GCTAGC 1 cut(s) 543
BpiI GAAGAC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 425
BpuMI CCSGG 4 cut(s) 195, 275, 282, 354
BsaAI YACGTR 2 cut(s) 31, 99
BsaHI GRCGYC 3 cut(s) 23, 72, 840
BsaI GGTCTC 2 cut(s) 7, 644
BsaJI CCNNGG 4 cut(s) 194, 280, 425, 707
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse118I RCCGGY 3 cut(s) 263, 320, 386
Bse1I ACTGG 1 cut(s) 50
BseBI CCWGG 1 cut(s) 797
BseDI CCNNGG 4 cut(s) 194, 280, 425, 707
BseGI GGATG 2 cut(s) 341, 561
BseLI CCNNNNNNNGG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 650
BseXI GCAGC 3 cut(s) 89, 169, 264
Bsh1236I CGCG 2 cut(s) 520, 701
Bsh1285I CGRYCG 1 cut(s) 380
BshFI GGCC 4 cut(s) 263, 320, 386, 795
BshNI GGYRCC 1 cut(s) 92
BsiEI CGRYCG 1 cut(s) 380
BsiHKAI GWGCWC 1 cut(s) 665
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 3 cut(s) 7, 586, 644
BsmBI CGTCTC 1 cut(s) 586
BsmFI GGGAC 1 cut(s) 263
BsmI GAATGC 3 cut(s) 122, 136, 603
BsnI GGCC 4 cut(s) 263, 320, 386, 795
Bso31I GGTCTC 2 cut(s) 7, 644
Bsp1286I GDGCHC 1 cut(s) 665
Bsp143I GATC 3 cut(s) 163, 392, 679
BspANI GGCC 4 cut(s) 263, 320, 386, 795
BspFNI CGCG 2 cut(s) 520, 701
BspLI GGNNCC 3 cut(s) 94, 279, 713
BspOI GCTAGC 1 cut(s) 543
BspT107I GGYRCC 1 cut(s) 92
BspTNI GGTCTC 2 cut(s) 7, 644
BsrBI CCGCTC 2 cut(s) 69, 409
BsrFI RCCGGY 3 cut(s) 263, 320, 386
BsrI ACTGG 1 cut(s) 50
BssAI RCCGGY 3 cut(s) 263, 320, 386
BssECI CCNNGG 4 cut(s) 194, 280, 425, 707
BssMI GATC 3 cut(s) 163, 392, 679
BssNI GRCGYC 3 cut(s) 23, 72, 840
BssT1I CCWWGG 2 cut(s) 425, 707
Bst2UI CCWGG 1 cut(s) 797
Bst4CI ACNGT 5 cut(s) 18, 205, 225, 378, 622
Bst6I CTCTTC 1 cut(s) 627
BstACI GRCGYC 3 cut(s) 23, 72, 840
BstBAI YACGTR 2 cut(s) 31, 99
BstC8I GCNNGC 4 cut(s) 322, 384, 541, 601
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 341, 561
BstFNI CGCG 2 cut(s) 520, 701
BstKTI GATC 3 cut(s) 166, 395, 682
BstMAI GTCTC 3 cut(s) 7, 586, 644
BstMBI GATC 3 cut(s) 163, 392, 679
BstMCI CGRYCG 1 cut(s) 380
BstMWI GCNNNNNNNGC 3 cut(s) 330, 545, 691
BstNI CCWGG 1 cut(s) 797
BstSCI CCNGG 5 cut(s) 193, 273, 280, 352, 795
BstSFI CTRYAG 1 cut(s) 863
BstUI CGCG 2 cut(s) 520, 701
BstV1I GCAGC 3 cut(s) 89, 169, 264
BstV2I GAAGAC 1 cut(s) 206
BsuRI GGCC 4 cut(s) 263, 320, 386, 795
BtsCI GGATG 2 cut(s) 341, 561
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 4 cut(s) 322, 384, 541, 601
CaiI CAGNNNCTG 1 cut(s) 83
Cfr10I RCCGGY 3 cut(s) 263, 320, 386
Cfr13I GGNCC 2 cut(s) 277, 318
CseI GACGC 3 cut(s) 61, 752, 848
Csp6I GTAC 1 cut(s) 556
CviAII CATG 1 cut(s) 52
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 1 cut(s) 63
DpnI GATC 3 cut(s) 165, 394, 681
DpnII GATC 3 cut(s) 163, 392, 679
DraI TTTAAA 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 793
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
EciI GGCGGA 1 cut(s) 348
Ecl136II GAGCTC 1 cut(s) 663
Eco130I CCWWGG 2 cut(s) 425, 707
Eco24I GRGCYC 1 cut(s) 665
Eco31I GGTCTC 2 cut(s) 7, 644
Eco47I GGWCC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 663
Eco72I CACGTG 2 cut(s) 31, 99
EcoICRI GAGCTC 1 cut(s) 663
EcoRII CCWGG 1 cut(s) 795
EcoT14I CCWWGG 2 cut(s) 425, 707
EcoT38I GRGCYC 1 cut(s) 665
ErhI CCWWGG 2 cut(s) 425, 707
Esp3I CGTCTC 1 cut(s) 586
FaeI CATG 1 cut(s) 55
FaqI GGGAC 1 cut(s) 263
FatI CATG 1 cut(s) 51
FblI GTMKAC 1 cut(s) 20
Fnu4HI GCNGC 8 cut(s) 70, 78, 108, 183, 253, 299, 325, 580
FokI GGATG 2 cut(s) 348, 548
FriOI GRGCYC 1 cut(s) 665
Fsp4HI GCNGC 8 cut(s) 70, 78, 108, 183, 253, 299, 325, 580
FspBI CTAG 2 cut(s) 311, 540
GluI GCNGC 8 cut(s) 70, 78, 108, 183, 253, 299, 325, 580
GsuI CTGGAG 1 cut(s) 425
HaeIII GGCC 4 cut(s) 263, 320, 386, 795
HgaI GACGC 3 cut(s) 61, 752, 848
Hin1I GRCGYC 3 cut(s) 23, 72, 840
Hin1II CATG 1 cut(s) 55
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 2 cut(s) 190, 827
HphI GGTGA 3 cut(s) 98, 199, 283
Hpy166II GTNNAC 3 cut(s) 21, 102, 145
Hpy188I TCNGA 1 cut(s) 504
Hpy188III TCNNGA 5 cut(s) 127, 161, 311, 608, 629
Hpy8I GTNNAC 3 cut(s) 21, 102, 145
Hpy99I CGWCG 4 cut(s) 22, 25, 77, 152
HpyAV CCTTC 2 cut(s) 83, 169
HpyCH4III ACNGT 5 cut(s) 18, 205, 225, 378, 622
HpyCH4IV ACGT 4 cut(s) 23, 30, 98, 213
HpyCH4V TGCA 1 cut(s) 824
HpyF10VI GCNNNNNNNGC 3 cut(s) 330, 545, 691
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 4 cut(s) 23, 30, 98, 213
Hsp92I GRCGYC 3 cut(s) 23, 72, 840
Hsp92II CATG 1 cut(s) 55
KroI GCCGGC 1 cut(s) 320
KroNI GCCGGC 1 cut(s) 322
Kzo9I GATC 3 cut(s) 163, 392, 679
LmnI GCTCC 3 cut(s) 400, 406, 668
Lsp1109I GCAGC 3 cut(s) 89, 169, 264
LweI GCATC 1 cut(s) 264
MaeI CTAG 2 cut(s) 311, 540
MaeII ACGT 4 cut(s) 23, 30, 98, 213
MaeIII GTNAC 4 cut(s) 24, 209, 284, 338
MalI GATC 3 cut(s) 165, 394, 681
MbiI CCGCTC 2 cut(s) 69, 409
MboI GATC 3 cut(s) 163, 392, 679
MboII GAAGA 5 cut(s) 211, 424, 449, 478, 644
MhlI GDGCHC 1 cut(s) 665
MluCI AATT 1 cut(s) 216
MmeI TCCRAC 1 cut(s) 655
MnlI CCTC 7 cut(s) 49, 253, 304, 427, 628, 631, 803
MroNI GCCGGC 1 cut(s) 320
MseI TTAA 2 cut(s) 269, 348
MspR9I CCNGG 5 cut(s) 195, 275, 282, 354, 797
MssI GTTTAAAC 1 cut(s) 349
Mva1269I GAATGC 3 cut(s) 122, 136, 603
MvaI CCWGG 1 cut(s) 797
MvnI CGCG 2 cut(s) 520, 701
MwoI GCNNNNNNNGC 3 cut(s) 330, 545, 691
NaeI GCCGGC 1 cut(s) 322
NciI CCSGG 4 cut(s) 195, 275, 282, 354
NdeII GATC 3 cut(s) 163, 392, 679
NgoMIV GCCGGC 1 cut(s) 320
NheI GCTAGC 1 cut(s) 539
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 3 cut(s) 94, 279, 713
NmuCI GTSAC 2 cut(s) 24, 209
PctI GAATGC 3 cut(s) 122, 136, 603
PdiI GCCGGC 1 cut(s) 322
PfeI GAWTC 2 cut(s) 190, 827
PkrI GCNGC 8 cut(s) 71, 79, 109, 184, 254, 300, 326, 581
PmaCI CACGTG 2 cut(s) 31, 99
PmeI GTTTAAAC 1 cut(s) 349
PmlI CACGTG 2 cut(s) 31, 99
Ppu21I YACGTR 2 cut(s) 31, 99
Psp124BI GAGCTC 1 cut(s) 665
Psp6I CCWGG 1 cut(s) 795
PspCI CACGTG 2 cut(s) 31, 99
PspGI CCWGG 1 cut(s) 795
PspN4I GGNNCC 3 cut(s) 94, 279, 713
PspPI GGNCC 2 cut(s) 277, 318
PstNI CAGNNNCTG 1 cut(s) 83
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
SacI GAGCTC 1 cut(s) 665
SalI GTCGAC 1 cut(s) 19
SaqAI TTAA 2 cut(s) 269, 348
SatI GCNGC 8 cut(s) 70, 78, 108, 183, 253, 299, 325, 580
Sau3AI GATC 3 cut(s) 163, 392, 679
Sau96I GGNCC 2 cut(s) 277, 318
ScaI AGTACT 1 cut(s) 557
ScrFI CCNGG 5 cut(s) 195, 275, 282, 354, 797
SduI GDGCHC 1 cut(s) 665
SfaNI GCATC 1 cut(s) 264
SfcI CTRYAG 1 cut(s) 863
SgrDI CGTCGACG 1 cut(s) 19
SinI GGWCC 1 cut(s) 277
Sse9I AATT 1 cut(s) 216
SspMI CTAG 2 cut(s) 311, 540
SstI GAGCTC 1 cut(s) 665
StyD4I CCNGG 5 cut(s) 193, 273, 280, 352, 795
StyI CCWWGG 2 cut(s) 425, 707
TaaI ACNGT 5 cut(s) 18, 205, 225, 378, 622
TaiI ACGT 4 cut(s) 26, 33, 101, 216
TaqI TCGA 4 cut(s) 20, 126, 258, 630
TasI AATT 1 cut(s) 216
TatI WGTACW 1 cut(s) 555
TauI GCSGC 5 cut(s) 72, 110, 301, 327, 582
TfiI GAWTC 2 cut(s) 190, 827
Tru1I TTAA 2 cut(s) 269, 348
Tru9I TTAA 2 cut(s) 269, 348
TscAI CASTG 1 cut(s) 210
TseFI GTSAC 2 cut(s) 24, 209
TseI GCWGC 3 cut(s) 77, 182, 252
Tsp45I GTSAC 2 cut(s) 24, 209
TspDTI ATGAA 3 cut(s) 550, 773, 777
TspGWI ACGGA 2 cut(s) 446, 734
TspRI CASTG 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 277
XbaI TCTAGA 1 cut(s) 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 803
XmiI GTMKAC 1 cut(s) 20
XspI CTAG 2 cut(s) 311, 540
ZraI GACGTC 1 cut(s) 24
ZrmI AGTACT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.