Prupe.6G061100_v2.0.a1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013839
Physical Location & Seq
Reverse (-)
4225420 .. 4227850
2431 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G061100.1

Sequence Viewer

Length: 924 bp
ATGAAGTTTGAAATGGAAATTCTATCGCCTTCATCCTATTTTTCAAGTTCAAATTGGCTTCTTGAAGAGAGCAAGAGCACACAATGGACCCCGGCAGAGAACAAAATGTTCGAAAACGCCTTGGCGGTGCACGACAAGGACACACCAGACCGCTGGCTTAAGGTGGCAGCACTGATACCTGGGAAGACAGCAATGGATGTGATGAAGCAGTATGAGGAATTGGAAGTTGATGTTGGCAAAATAGAAGCAGGGCTGGTTCCAATTCCTGGCTATAGTGCCTCTCCATTCACATTGGAGTGGGTGAATAGACATGGCTATGATGGGTTCAAGCAGTCTTATGGGCTTGGTGGTAAGAGATCTTCATCAGCTAGGCCTGCTGATCATGAAAGAAAGAAAGGTGTTCCATGGACTGAAGATGAACACAAGCTGTTTCTACTGGGGCTGAAAAAGTATGGCAAAGGGGACTGGAGGAACATCTCACGCAATTTTGTGGTAACTCGAACACCGACTCAAGTGGCTAGTCATGCACAGAAGTACTTTATCAGGCAGCTTTCAGGGGGGAAGGATAAGCGAAGAGCCAGCATCCATGACATAACAACCGTCAATCTCAACGACATGAGAACTCCATCTCCAGACAATAAAAGGCCTCTCTCTCCTGAGCACTCATCTGTGCCTCAGCAGCCAAATTCTGCTGCCACTGCCAGGACTCCGTTTCAGTGGCATCACCAGCAAGGCGGTGGAGCAAACATGGCTTTCAATCAAGCACATAGAAATATGTTCATGTCCCATCCTTATGGGATTAGTTCATATGGACTTAAAATGCAGGGGCAAGATCTGCACAAAGGTGCTCCTAATAACTCTTACTATGGACCTCAAAATATGGTTTTCCAGATGCAATCCGCACAGCACTACCCGTACGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

308

Amino Acids

34.72

Weight (kDa)

9.4

Isoelectric Point (pI)

52.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013839)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58900
fragaria_vesca FvH4_3g38150
malus_domestica MD03G1076200.v1.1 MD11G1080800.v1.1
prunus_persica Prupe.6G061100_v2.0.a1
pyrus_communis pycom03g06050 pycom11g06890
rosa_chinensis RchiOBHm_Chr5g0068581
rosa_laevigata RLG00000035982
rosa_multiflora Rmu_sc0004721.1_g000002
rosa_roxburghii Rroxscaffold_1G00012280
rosa_rugosa Rorug05G0391600
rosa_samantha Rh5AG449300 Rh5BG467500 Rh5CG489300 Rh5DG480900
rosa_wichuraiana Rw5G041950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 266
AciI CCGC 4 cut(s) 125, 151, 735, 900
AcsI RAATTY 2 cut(s) 18, 685
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 2 cut(s) 536, 917
AfiI CCNNNNNNNGG 2 cut(s) 266, 702
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 6 cut(s) 11, 45, 51, 65, 328, 757
AjnI CCWGG 3 cut(s) 178, 265, 701
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
AleI CACNNNNGTG 1 cut(s) 843
AloI GAACNNNNNNTCC 2 cut(s) 613, 645
AluBI AGCT 3 cut(s) 368, 427, 550
AluI AGCT 3 cut(s) 368, 427, 550
Alw21I GWGCWC 4 cut(s) 80, 132, 663, 850
Alw44I GTGCAC 1 cut(s) 128
AoxI GGCC 2 cut(s) 371, 644
ApaLI GTGCAC 1 cut(s) 128
ApeKI GCWGC 4 cut(s) 167, 547, 679, 692
ApoI RAATTY 2 cut(s) 18, 685
AspS9I GGNCC 2 cut(s) 87, 869
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 2 cut(s) 313, 716
AsuII TTCGAA 1 cut(s) 111
AvaII GGWCC 2 cut(s) 87, 869
BaeGI GKGCMC 1 cut(s) 132
BarI GAAGNNNNNNTAC 2 cut(s) 343, 375
BbsI GAAGAC 1 cut(s) 191
Bbv12I GWGCWC 4 cut(s) 80, 132, 663, 850
BbvCI CCTCAGC 1 cut(s) 675
BbvI GCAGC 4 cut(s) 179, 559, 679, 691
BccI CCATC 3 cut(s) 314, 634, 795
BciT130I CCWGG 3 cut(s) 180, 267, 703
BclI TGATCA 1 cut(s) 379
BcnI CCSGG 1 cut(s) 92
BfaI CTAG 2 cut(s) 369, 519
BfmI CTRYAG 1 cut(s) 271
BfrI CTTAAG 1 cut(s) 158
BglII AGATCT 2 cut(s) 356, 832
BisI GCNGC 4 cut(s) 168, 548, 680, 693
BlsI GCNGC 4 cut(s) 169, 549, 681, 694
BmcAI AGTACT 1 cut(s) 536
Bme1390I CCNGG 4 cut(s) 92, 180, 267, 703
Bme18I GGWCC 2 cut(s) 87, 869
BmgT120I GGNCC 2 cut(s) 87, 869
BmiI GGNNCC 2 cut(s) 89, 258
BmrFI CCNGG 4 cut(s) 92, 180, 267, 703
BmrI ACTGGG 1 cut(s) 446
BmsI GCATC 3 cut(s) 591, 730, 882
BmuI ACTGGG 1 cut(s) 446
BpiI GAAGAC 1 cut(s) 191
BpmI CTGGAG 2 cut(s) 487, 615
Bpu10I CCTNAGC 2 cut(s) 657, 675
Bpu14I TTCGAA 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 495
BpuMI CCSGG 1 cut(s) 92
BsaBI GATNNNNATC 1 cut(s) 361
BsaJI CCNNGG 4 cut(s) 90, 120, 179, 404
BsaXI ACNNNNNCTCC 2 cut(s) 613, 643
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 702
Bse1I ACTGG 2 cut(s) 441, 470
Bse3DI GCAATG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 361
BseBI CCWGG 3 cut(s) 180, 267, 703
BseDI CCNNGG 4 cut(s) 90, 120, 179, 404
BseGI GGATG 4 cut(s) 32, 202, 582, 787
BseJI GATNNNNATC 1 cut(s) 361
BseLI CCNNNNNNNGG 2 cut(s) 266, 702
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 648, 689
BseNI ACTGG 2 cut(s) 441, 470
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 4 cut(s) 179, 559, 679, 691
BsgI GTGCAG 1 cut(s) 821
BshFI GGCC 2 cut(s) 373, 646
BsiHKAI GWGCWC 4 cut(s) 80, 132, 663, 850
BsiSI CCGG 1 cut(s) 92
BsiWI CGTACG 1 cut(s) 915
BslFI GGGAC 2 cut(s) 476, 769
BslI CCNNNNNNNGG 2 cut(s) 266, 702
BsmFI GGGAC 2 cut(s) 476, 769
BsnI GGCC 2 cut(s) 373, 646
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 4 cut(s) 80, 132, 663, 850
Bsp143I GATC 3 cut(s) 356, 379, 832
Bsp19I CCATGG 1 cut(s) 404
BspACI CCGC 4 cut(s) 125, 151, 735, 900
BspANI GGCC 2 cut(s) 373, 646
BspCNI CTCAG 2 cut(s) 649, 688
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 2 cut(s) 89, 258
BspQI GCTCTTC 1 cut(s) 568
BspT104I TTCGAA 1 cut(s) 111
BspTI CTTAAG 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 2 cut(s) 441, 470
BssECI CCNNGG 4 cut(s) 90, 120, 179, 404
BssMI GATC 3 cut(s) 356, 379, 832
BssT1I CCWWGG 2 cut(s) 120, 404
Bst2UI CCWGG 3 cut(s) 180, 267, 703
Bst4CI ACNGT 1 cut(s) 601
Bst6I CTCTTC 2 cut(s) 60, 568
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 835
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 3 cut(s) 155, 375, 580
BstDEI CTNAG 2 cut(s) 657, 675
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 4 cut(s) 32, 202, 582, 787
BstKTI GATC 3 cut(s) 359, 382, 835
BstMBI GATC 3 cut(s) 356, 379, 832
BstMWI GCNNNNNNNGC 7 cut(s) 374, 524, 679, 698, 727, 749, 835
BstNI CCWGG 3 cut(s) 180, 267, 703
BstSCI CCNGG 4 cut(s) 90, 178, 265, 701
BstSFI CTRYAG 1 cut(s) 271
BstSLI GKGCMC 1 cut(s) 132
BstV1I GCAGC 4 cut(s) 179, 559, 679, 691
BstV2I GAAGAC 1 cut(s) 191
BstX2I RGATCY 2 cut(s) 356, 832
BstXI CCANNNNNNTGG 2 cut(s) 153, 794
BstYI RGATCY 2 cut(s) 356, 832
BsuRI GGCC 2 cut(s) 373, 646
BtgI CCRYGG 1 cut(s) 404
BtsCI GGATG 4 cut(s) 32, 202, 582, 787
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 3 cut(s) 170, 696, 722
Cac8I GCNNGC 3 cut(s) 155, 375, 580
CciI TCATGA 1 cut(s) 382
Cfr13I GGNCC 2 cut(s) 87, 869
Csp6I GTAC 2 cut(s) 535, 916
CviAII CATG 8 cut(s) 311, 383, 405, 524, 587, 616, 748, 781
CviQI GTAC 2 cut(s) 535, 916
DdeI CTNAG 2 cut(s) 657, 675
DpnI GATC 3 cut(s) 358, 381, 834
DpnII GATC 3 cut(s) 356, 379, 832
Eam1104I CTCTTC 2 cut(s) 60, 568
EarI CTCTTC 2 cut(s) 60, 568
Eco130I CCWWGG 2 cut(s) 120, 404
Eco147I AGGCCT 2 cut(s) 373, 646
Eco47I GGWCC 2 cut(s) 87, 869
Eco57I CTGAAG 1 cut(s) 432
EcoRII CCWGG 3 cut(s) 178, 265, 701
EcoT14I CCWWGG 2 cut(s) 120, 404
ErhI CCWWGG 2 cut(s) 120, 404
FaeI CATG 8 cut(s) 314, 386, 408, 527, 590, 619, 751, 784
FaqI GGGAC 2 cut(s) 476, 769
FatI CATG 8 cut(s) 310, 382, 404, 523, 586, 615, 747, 780
FauNDI CATATG 1 cut(s) 808
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 4 cut(s) 168, 548, 680, 693
FokI GGATG 4 cut(s) 19, 209, 569, 774
Fsp4HI GCNGC 4 cut(s) 168, 548, 680, 693
FspBI CTAG 2 cut(s) 369, 519
GluI GCNGC 4 cut(s) 168, 548, 680, 693
GsuI CTGGAG 2 cut(s) 487, 615
HaeIII GGCC 2 cut(s) 373, 646
HapII CCGG 1 cut(s) 92
Hin1II CATG 8 cut(s) 314, 386, 408, 527, 590, 619, 751, 784
HinfI GANTC 2 cut(s) 508, 706
HpaII CCGG 1 cut(s) 92
HphI GGTGA 2 cut(s) 313, 716
Hpy166II GTNNAC 1 cut(s) 130
Hpy188III TCNNGA 5 cut(s) 62, 383, 632, 656, 889
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 2 cut(s) 39, 556
HpyCH4III ACNGT 1 cut(s) 601
HpyCH4V TGCA 5 cut(s) 130, 527, 823, 838, 895
HpyF10VI GCNNNNNNNGC 7 cut(s) 374, 524, 679, 698, 727, 749, 835
HpyF3I CTNAG 2 cut(s) 657, 675
Hsp92II CATG 8 cut(s) 314, 386, 408, 527, 590, 619, 751, 784
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 3 cut(s) 356, 379, 832
LguI GCTCTTC 1 cut(s) 568
LmnI GCTCC 2 cut(s) 740, 853
Lsp1109I GCAGC 4 cut(s) 179, 559, 679, 691
LweI GCATC 3 cut(s) 591, 730, 882
MaeI CTAG 2 cut(s) 369, 519
MaeIII GTNAC 1 cut(s) 493
MalI GATC 3 cut(s) 358, 381, 834
MboI GATC 3 cut(s) 356, 379, 832
MboII GAAGA 5 cut(s) 77, 196, 351, 425, 585
MflI RGATCY 2 cut(s) 356, 832
MhlI GDGCHC 4 cut(s) 80, 132, 663, 850
MluCI AATT 6 cut(s) 18, 52, 218, 261, 484, 685
MlyI GAGTC 2 cut(s) 502, 700
MnlI CCTC 6 cut(s) 208, 289, 462, 657, 684, 882
MseI TTAA 2 cut(s) 159, 816
MslI CAYNNNNRTG 4 cut(s) 295, 315, 792, 843
MspA1I CMGCKG 1 cut(s) 153
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 4 cut(s) 92, 180, 267, 703
MvaI CCWGG 3 cut(s) 180, 267, 703
MwoI GCNNNNNNNGC 7 cut(s) 374, 524, 679, 698, 727, 749, 835
NciI CCSGG 1 cut(s) 92
NcoI CCATGG 1 cut(s) 404
NdeI CATATG 1 cut(s) 808
NdeII GATC 3 cut(s) 356, 379, 832
NlaIII CATG 8 cut(s) 314, 386, 408, 527, 590, 619, 751, 784
NlaIV GGNNCC 2 cut(s) 89, 258
NspV TTCGAA 1 cut(s) 111
OliI CACNNNNGTG 1 cut(s) 843
PagI TCATGA 1 cut(s) 382
PceI AGGCCT 2 cut(s) 373, 646
PciSI GCTCTTC 1 cut(s) 568
Pfl23II CGTACG 1 cut(s) 915
PflMI CCANNNNNTGG 1 cut(s) 266
PkrI GCNGC 4 cut(s) 169, 549, 681, 694
PleI GAGTC 2 cut(s) 502, 700
PpsI GAGTC 2 cut(s) 502, 700
Psp6I CCWGG 3 cut(s) 178, 265, 701
PspGI CCWGG 3 cut(s) 178, 265, 701
PspLI CGTACG 1 cut(s) 915
PspN4I GGNNCC 2 cut(s) 89, 258
PspPI GGNCC 2 cut(s) 87, 869
PsuI RGATCY 2 cut(s) 356, 832
RsaI GTAC 2 cut(s) 536, 917
RsaNI GTAC 2 cut(s) 535, 916
RseI CAYNNNNRTG 4 cut(s) 295, 315, 792, 843
SapI GCTCTTC 1 cut(s) 568
SaqAI TTAA 2 cut(s) 159, 816
SatI GCNGC 4 cut(s) 168, 548, 680, 693
Sau3AI GATC 3 cut(s) 356, 379, 832
Sau96I GGNCC 2 cut(s) 87, 869
ScaI AGTACT 1 cut(s) 536
SchI GAGTC 2 cut(s) 502, 700
ScrFI CCNGG 4 cut(s) 92, 180, 267, 703
SduI GDGCHC 4 cut(s) 80, 132, 663, 850
SetI ASST 8 cut(s) 165, 181, 370, 400, 429, 552, 847, 874
SfaNI GCATC 3 cut(s) 591, 730, 882
SfcI CTRYAG 1 cut(s) 271
SfuI TTCGAA 1 cut(s) 111
SinI GGWCC 2 cut(s) 87, 869
SmiMI CAYNNNNRTG 4 cut(s) 295, 315, 792, 843
SmlI CTYRAG 2 cut(s) 158, 510
SmoI CTYRAG 2 cut(s) 158, 510
Sse9I AATT 6 cut(s) 18, 52, 218, 261, 484, 685
SseBI AGGCCT 2 cut(s) 373, 646
SsiI CCGC 4 cut(s) 125, 151, 735, 900
SspMI CTAG 2 cut(s) 369, 519
StuI AGGCCT 2 cut(s) 373, 646
StyD4I CCNGG 4 cut(s) 90, 178, 265, 701
StyI CCWWGG 2 cut(s) 120, 404
TaaI ACNGT 1 cut(s) 601
TaqI TCGA 2 cut(s) 111, 499
TasI AATT 6 cut(s) 18, 52, 218, 261, 484, 685
TatI WGTACW 1 cut(s) 534
Tru1I TTAA 2 cut(s) 159, 816
Tru9I TTAA 2 cut(s) 159, 816
TscAI CASTG 3 cut(s) 177, 703, 722
TseI GCWGC 4 cut(s) 167, 547, 679, 692
TspDTI ATGAA 8 cut(s) 17, 21, 218, 351, 399, 432, 769, 795
TspGWI ACGGA 1 cut(s) 699
TspRI CASTG 3 cut(s) 177, 703, 722
Van91I CCANNNNNTGG 1 cut(s) 266
Vha464I CTTAAG 1 cut(s) 158
VneI GTGCAC 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 87, 869
XapI RAATTY 2 cut(s) 18, 685
XcmI CCANNNNNNNNNTGG 1 cut(s) 734
XspI CTAG 2 cut(s) 369, 519
ZrmI AGTACT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.