pycom03g06050
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0013839
Physical Location & Seq
Reverse (-)
4802676 .. 4803823
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g06050.2

Sequence Viewer

Length: 921 bp
ATGAAGTTTGAGATGGAGATTCTGTCCCCTTCGTCCTATTTTTCGACTTCGAATAGGCTTATCGAAGAGAGCAAGAGCGCGAGATGGACTCCGGCGGAGAACAAAATGTTCGAAAACGCCCTGGCGGTGTACGACAAGGACGCGCCGGACCGATGGCACAAGGTGGCGGAGTTGATACCAGGGAAGACGGTGAGGGACGTGATGAAGCAGTACGAGGAATTGGAACTTGATGTTGGCAAGATAGAAGCAGGGCTTATTCCGATTCCGGGATACGGCCCCTCTCCATTCACATTGGAGTGGGTGAACAGACACGGCGGCTATGATGGGTTCAAACAGCAGTCTTATGGGATTGGCGGCAAGAGATCTTCGTCAAATCGCCCTTCGGATCACGAAAGAAAGAAAGGGGTTCCGTGGACAGAAGAAGAACACAAGCTGTTCCTAATGGGACTGAAGAAGTATGGCAAGGGGGACTGGAGGAACATCTCGAGGAATTTTGTGGTGACACGAACACCGACTCAGGTGGCTAGTCATGCACAGAAGTACTTCATCAGGCAGCTTTCCGGGGGGAAGGATAAGCGAAGAGCCAGCATCCATGACATAACTGTCAATCTCAACGACATGAGAACTCCGTCTCCAGACAACAAAAGTCCTCTCTCTCCAGAGCTGCCTCAGCATCCGAATTCTGCTGCCACCGCTAGGGCTCCGTTTCAGTGGCATCAGCCGCAAGGCGGTGGAGTAAACTTGGGTTTTAATCAAGGGCATGGAAATATGTTCATGTCCTCCCATCCTTATGGGATTAGTTCATACGGACAAAAAATGCAGGGGCAGGATCTGCACAAAGGTGCTGCTAATAACTTGTACTATGGACCGCAAAATTTGGGTTTTCAGATGCAATCCTCGCAGCACTACCCGCACGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

307

Amino Acids

34.52

Weight (kDa)

9.4

Isoelectric Point (pI)

60.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013839)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58900
fragaria_vesca FvH4_3g38150
malus_domestica MD03G1076200.v1.1 MD11G1080800.v1.1
prunus_persica Prupe.6G061100_v2.0.a1
pyrus_communis pycom03g06050 pycom11g06890
rosa_chinensis RchiOBHm_Chr5g0068581
rosa_laevigata RLG00000035982
rosa_multiflora Rmu_sc0004721.1_g000002
rosa_roxburghii Rroxscaffold_1G00012280
rosa_rugosa Rorug05G0391600
rosa_samantha Rh5AG449300 Rh5BG467500 Rh5CG489300 Rh5DG480900
rosa_wichuraiana Rw5G041950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 602
AccII CGCG 2 cut(s) 80, 143
AclWI GGATC 2 cut(s) 393, 837
AcsI RAATTY 3 cut(s) 490, 679, 874
AcuI CTGAAG 1 cut(s) 470
AdeI CACNNNGTG 1 cut(s) 163
AfaI GTAC 4 cut(s) 131, 212, 542, 860
AfiI CCNNNNNNNGG 4 cut(s) 266, 272, 696, 728
AgsI TTSAA 1 cut(s) 331
AjiI CACGTC 1 cut(s) 199
AjnI CCWGG 2 cut(s) 120, 178
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
AleI CACNNNNGTG 1 cut(s) 840
AloI GAACNNNNNNTCC 2 cut(s) 616, 648
AluBI AGCT 3 cut(s) 433, 556, 664
AluI AGCT 3 cut(s) 433, 556, 664
Alw26I GTCTC 1 cut(s) 636
AlwI GGATC 2 cut(s) 393, 837
AlwNI CAGNNNCTG 1 cut(s) 832
Ama87I CYCGRG 1 cut(s) 484
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 5 cut(s) 553, 664, 686, 845, 901
ApoI RAATTY 3 cut(s) 490, 679, 874
Asp700I GAANNNNTTC 1 cut(s) 542
AspLEI GCGC 2 cut(s) 80, 145
AspS9I GGNCC 3 cut(s) 148, 275, 866
AsuC2I CCSGG 2 cut(s) 267, 562
AsuHPI GGTGA 3 cut(s) 202, 313, 511
AsuII TTCGAA 2 cut(s) 50, 111
AvaI CYCGRG 1 cut(s) 484
AvaII GGWCC 2 cut(s) 148, 866
BanII GRGCYC 1 cut(s) 703
BbsI GAAGAC 1 cut(s) 191
BbvCI CCTCAGC 1 cut(s) 669
BbvI GCAGC 5 cut(s) 565, 651, 673, 832, 913
BccI CCATC 5 cut(s) 7, 78, 147, 317, 792
BceAI ACGGC 2 cut(s) 289, 328
BciT130I CCWGG 2 cut(s) 122, 180
BciVI GTATCC 1 cut(s) 263
BcnI CCSGG 2 cut(s) 267, 562
BcoDI GTCTC 1 cut(s) 636
BfaI CTAG 2 cut(s) 525, 696
BfuI GTATCC 1 cut(s) 263
BglII AGATCT 1 cut(s) 362
BisI GCNGC 8 cut(s) 316, 355, 554, 665, 687, 722, 846, 902
BlsI GCNGC 8 cut(s) 317, 356, 555, 666, 688, 723, 847, 903
BmcAI AGTACT 1 cut(s) 542
Bme1390I CCNGG 4 cut(s) 122, 180, 267, 562
Bme18I GGWCC 2 cut(s) 148, 866
BmeT110I CYCGRG 1 cut(s) 484
BmgBI CACGTC 1 cut(s) 199
BmgT120I GGNCC 3 cut(s) 148, 275, 866
BmiI GGNNCC 3 cut(s) 277, 408, 702
BmrFI CCNGG 4 cut(s) 122, 180, 267, 562
BmsI GCATC 4 cut(s) 597, 682, 724, 879
BpiI GAAGAC 1 cut(s) 191
BplI GAGNNNNNCTC 2 cut(s) 73, 105
BpmI CTGGAG 3 cut(s) 493, 618, 642
Bpu10I CCTNAGC 1 cut(s) 669
Bpu14I TTCGAA 2 cut(s) 50, 111
BpuMI CCSGG 2 cut(s) 267, 562
BsaJI CCNNGG 4 cut(s) 120, 179, 410, 561
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 616, 646
Bsc4I CCNNNNNNNGG 4 cut(s) 266, 272, 696, 728
Bse1I ACTGG 1 cut(s) 476
BseBI CCWGG 2 cut(s) 122, 180
BseDI CCNNGG 4 cut(s) 120, 179, 410, 561
BseGI GGATG 3 cut(s) 588, 673, 784
BseLI CCNNNNNNNGG 4 cut(s) 266, 272, 696, 728
BseMII CTCAG 2 cut(s) 530, 683
BseNI ACTGG 1 cut(s) 476
BseXI GCAGC 5 cut(s) 565, 651, 673, 832, 913
BsgI GTGCAG 1 cut(s) 818
Bsh1236I CGCG 2 cut(s) 80, 143
BshFI GGCC 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 484
BsiSI CCGG 4 cut(s) 92, 146, 266, 561
BslFI GGGAC 4 cut(s) 10, 209, 459, 482
BslI CCNNNNNNNGG 4 cut(s) 266, 272, 696, 728
BsmAI GTCTC 1 cut(s) 636
BsmBI CGTCTC 1 cut(s) 636
BsmFI GGGAC 4 cut(s) 10, 209, 459, 482
BsnI GGCC 1 cut(s) 276
BsoBI CYCGRG 1 cut(s) 484
Bsp119I TTCGAA 2 cut(s) 50, 111
Bsp1286I GDGCHC 1 cut(s) 703
Bsp143I GATC 3 cut(s) 362, 385, 829
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 2 cut(s) 529, 682
BspFNI CGCG 2 cut(s) 80, 143
BspLI GGNNCC 3 cut(s) 277, 408, 702
BspPI GGATC 2 cut(s) 393, 837
BspQI GCTCTTC 1 cut(s) 574
BspT104I TTCGAA 2 cut(s) 50, 111
BsrI ACTGG 1 cut(s) 476
BssECI CCNNGG 4 cut(s) 120, 179, 410, 561
BssMI GATC 3 cut(s) 362, 385, 829
Bst2UI CCWGG 2 cut(s) 122, 180
Bst4CI ACNGT 2 cut(s) 190, 604
Bst6I CTCTTC 2 cut(s) 60, 574
BstAPI GCANNNNNTGC 1 cut(s) 832
BstBI TTCGAA 2 cut(s) 50, 111
BstC8I GCNNGC 1 cut(s) 586
BstDEI CTNAG 2 cut(s) 516, 669
BstDSI CCRYGG 1 cut(s) 410
BstF5I GGATG 3 cut(s) 588, 673, 784
BstFNI CGCG 2 cut(s) 80, 143
BstHHI GCGC 2 cut(s) 80, 145
BstKTI GATC 3 cut(s) 365, 388, 832
BstMAI GTCTC 1 cut(s) 636
BstMBI GATC 3 cut(s) 362, 385, 829
BstMWI GCNNNNNNNGC 7 cut(s) 530, 670, 692, 721, 832, 898, 910
BstNI CCWGG 2 cut(s) 122, 180
BstSCI CCNGG 4 cut(s) 120, 178, 265, 560
BstUI CGCG 2 cut(s) 80, 143
BstV1I GCAGC 5 cut(s) 565, 651, 673, 832, 913
BstV2I GAAGAC 1 cut(s) 191
BstX2I RGATCY 2 cut(s) 362, 829
BstXI CCANNNNNNTGG 1 cut(s) 791
BstYI RGATCY 2 cut(s) 362, 829
BsuI GTATCC 1 cut(s) 263
BsuRI GGCC 1 cut(s) 276
BtgI CCRYGG 1 cut(s) 410
BtrI CACGTC 1 cut(s) 199
BtsCI GGATG 3 cut(s) 588, 673, 784
BtsIMutI CAGTG 1 cut(s) 716
Cac8I GCNNGC 1 cut(s) 586
CaiI CAGNNNCTG 1 cut(s) 832
CfoI GCGC 2 cut(s) 80, 145
Cfr13I GGNCC 3 cut(s) 148, 275, 866
CpoI CGGWCCG 1 cut(s) 148
CseI GACGC 1 cut(s) 149
Csp6I GTAC 4 cut(s) 130, 211, 541, 859
CspI CGGWCCG 1 cut(s) 148
CviAII CATG 5 cut(s) 530, 593, 619, 761, 775
CviQI GTAC 4 cut(s) 130, 211, 541, 859
DdeI CTNAG 2 cut(s) 516, 669
DpnI GATC 3 cut(s) 364, 387, 831
DpnII GATC 3 cut(s) 362, 385, 829
DraIII CACNNNGTG 1 cut(s) 163
DrdI GACNNNNNNGTC 1 cut(s) 602
DseDI GACNNNNNNGTC 1 cut(s) 602
Eam1104I CTCTTC 2 cut(s) 60, 574
EarI CTCTTC 2 cut(s) 60, 574
EciI GGCGGA 2 cut(s) 110, 182
Eco24I GRGCYC 1 cut(s) 703
Eco47I GGWCC 2 cut(s) 148, 866
Eco57I CTGAAG 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 484
EcoRI GAATTC 1 cut(s) 679
EcoRII CCWGG 2 cut(s) 120, 178
EcoT38I GRGCYC 1 cut(s) 703
Esp3I CGTCTC 1 cut(s) 636
FaeI CATG 5 cut(s) 533, 596, 622, 764, 778
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FaqI GGGAC 4 cut(s) 10, 209, 459, 482
FatI CATG 5 cut(s) 529, 592, 618, 760, 774
FauI CCCGC 1 cut(s) 918
Fnu4HI GCNGC 8 cut(s) 316, 355, 554, 665, 687, 722, 846, 902
FokI GGATG 3 cut(s) 575, 660, 771
FriOI GRGCYC 1 cut(s) 703
Fsp4HI GCNGC 8 cut(s) 316, 355, 554, 665, 687, 722, 846, 902
FspBI CTAG 2 cut(s) 525, 696
GlaI GCGC 2 cut(s) 79, 144
GluI GCNGC 8 cut(s) 316, 355, 554, 665, 687, 722, 846, 902
GsuI CTGGAG 3 cut(s) 493, 618, 642
HaeIII GGCC 1 cut(s) 276
HapII CCGG 4 cut(s) 92, 146, 266, 561
HgaI GACGC 1 cut(s) 149
HhaI GCGC 2 cut(s) 80, 145
Hin1II CATG 5 cut(s) 533, 596, 622, 764, 778
Hin6I GCGC 2 cut(s) 78, 143
HinP1I GCGC 2 cut(s) 78, 143
HinfI GANTC 4 cut(s) 19, 88, 262, 514
HpaII CCGG 4 cut(s) 92, 146, 266, 561
HphI GGTGA 3 cut(s) 202, 313, 511
Hpy166II GTNNAC 4 cut(s) 130, 304, 414, 739
Hpy188I TCNGA 4 cut(s) 261, 385, 678, 888
Hpy188III TCNNGA 4 cut(s) 389, 484, 635, 659
Hpy8I GTNNAC 4 cut(s) 130, 304, 414, 739
HpyAV CCTTC 3 cut(s) 39, 390, 562
HpyCH4III ACNGT 2 cut(s) 190, 604
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 4 cut(s) 533, 820, 835, 892
HpyF10VI GCNNNNNNNGC 7 cut(s) 530, 670, 692, 721, 832, 898, 910
HpyF3I CTNAG 2 cut(s) 516, 669
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 5 cut(s) 533, 596, 622, 764, 778
HspAI GCGC 2 cut(s) 78, 143
Kzo9I GATC 3 cut(s) 362, 385, 829
LguI GCTCTTC 1 cut(s) 574
LmnI GCTCC 1 cut(s) 706
Lsp1109I GCAGC 5 cut(s) 565, 651, 673, 832, 913
LweI GCATC 4 cut(s) 597, 682, 724, 879
MaeI CTAG 2 cut(s) 525, 696
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 499
MalI GATC 3 cut(s) 364, 387, 831
MboI GATC 3 cut(s) 362, 385, 829
MboII GAAGA 7 cut(s) 77, 196, 357, 431, 434, 463, 591
MflI RGATCY 2 cut(s) 362, 829
MhlI GDGCHC 1 cut(s) 703
MluCI AATT 4 cut(s) 218, 490, 679, 874
MlyI GAGTC 2 cut(s) 82, 508
MnlI CCTC 9 cut(s) 186, 208, 289, 468, 480, 660, 678, 790, 907
MroXI GAANNNNTTC 1 cut(s) 542
MseI TTAA 1 cut(s) 750
MslI CAYNNNNRTG 3 cut(s) 295, 789, 840
MspI CCGG 4 cut(s) 92, 146, 266, 561
MspR9I CCNGG 4 cut(s) 122, 180, 267, 562
MvaI CCWGG 2 cut(s) 122, 180
MvnI CGCG 2 cut(s) 80, 143
MwoI GCNNNNNNNGC 7 cut(s) 530, 670, 692, 721, 832, 898, 910
NciI CCSGG 2 cut(s) 267, 562
NdeII GATC 3 cut(s) 362, 385, 829
NlaIII CATG 5 cut(s) 533, 596, 622, 764, 778
NlaIV GGNNCC 3 cut(s) 277, 408, 702
NmuCI GTSAC 1 cut(s) 499
NspV TTCGAA 2 cut(s) 50, 111
OliI CACNNNNGTG 1 cut(s) 840
PaeR7I CTCGAG 1 cut(s) 484
PciSI GCTCTTC 1 cut(s) 574
PdmI GAANNNNTTC 1 cut(s) 542
PfeI GAWTC 2 cut(s) 19, 262
PfoI TCCNGGA 1 cut(s) 265
PkrI GCNGC 8 cut(s) 317, 356, 555, 666, 688, 723, 847, 903
PleI GAGTC 2 cut(s) 82, 508
PpsI GAGTC 2 cut(s) 82, 508
Psp6I CCWGG 2 cut(s) 120, 178
PspGI CCWGG 2 cut(s) 120, 178
PspN4I GGNNCC 3 cut(s) 277, 408, 702
PspPI GGNCC 3 cut(s) 148, 275, 866
PstNI CAGNNNCTG 1 cut(s) 832
PsuI RGATCY 2 cut(s) 362, 829
RsaI GTAC 4 cut(s) 131, 212, 542, 860
RsaNI GTAC 4 cut(s) 130, 211, 541, 859
RseI CAYNNNNRTG 3 cut(s) 295, 789, 840
Rsr2I CGGWCCG 1 cut(s) 148
RsrII CGGWCCG 1 cut(s) 148
SapI GCTCTTC 1 cut(s) 574
SaqAI TTAA 1 cut(s) 750
SatI GCNGC 8 cut(s) 316, 355, 554, 665, 687, 722, 846, 902
Sau3AI GATC 3 cut(s) 362, 385, 829
Sau96I GGNCC 3 cut(s) 148, 275, 866
ScaI AGTACT 1 cut(s) 542
SchI GAGTC 2 cut(s) 82, 508
ScrFI CCNGG 4 cut(s) 122, 180, 267, 562
SduI GDGCHC 1 cut(s) 703
SetI ASST 7 cut(s) 165, 201, 435, 522, 558, 666, 844
SfaNI GCATC 4 cut(s) 597, 682, 724, 879
Sfr274I CTCGAG 1 cut(s) 484
SfuI TTCGAA 2 cut(s) 50, 111
SinI GGWCC 2 cut(s) 148, 866
SlaI CTCGAG 1 cut(s) 484
SmiMI CAYNNNNRTG 3 cut(s) 295, 789, 840
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
Sse9I AATT 4 cut(s) 218, 490, 679, 874
SspMI CTAG 2 cut(s) 525, 696
StyD4I CCNGG 4 cut(s) 120, 178, 265, 560
TaaI ACNGT 2 cut(s) 190, 604
TaiI ACGT 1 cut(s) 201
TaqI TCGA 5 cut(s) 44, 50, 63, 111, 485
TaqII GACCGA 1 cut(s) 165
TasI AATT 4 cut(s) 218, 490, 679, 874
TatI WGTACW 2 cut(s) 540, 858
TauI GCSGC 3 cut(s) 318, 357, 724
TfiI GAWTC 2 cut(s) 19, 262
Tru1I TTAA 1 cut(s) 750
Tru9I TTAA 1 cut(s) 750
TscAI CASTG 1 cut(s) 716
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 5 cut(s) 553, 664, 686, 845, 901
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 5 cut(s) 17, 218, 535, 763, 792
TspGWI ACGGA 4 cut(s) 399, 618, 693, 822
TspRI CASTG 1 cut(s) 716
VpaK11BI GGWCC 2 cut(s) 148, 866
XapI RAATTY 3 cut(s) 490, 679, 874
XhoI CTCGAG 1 cut(s) 484
XmnI GAANNNNTTC 1 cut(s) 542
XspI CTAG 2 cut(s) 525, 696
ZrmI AGTACT 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.