Rorug05G0391600
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0013839
Physical Location & Seq
Reverse (-)
53421827 .. 53422351
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0391600.1

Sequence Viewer

Length: 525 bp
ATGAAACAGCCAGAACAAGTTCCTAGTTTGGTTGTTCAACCTGGGATTGTGGTGGAAGAGGTAGGGGACACAACGATACCAGTCCAGAGTGTGAACCCTGTGCTGATGAAGGTTGTTCCGGGCTTGGTTTCCACCCAGCGAGTGAATGCTCCACACTCAAGTTCAGTTCCAATACCAGCAGTCGCCACTGAATCTAGTGATAGTGTGCCTCCCGGTTTTCAGCCGCTTACTCCGAGAACTGAGGTTTCGGCCTCTAGTTCCACATCATCAATTAATCCTTCTACTTTCGTGGCTAACAACATCCAAGAGCCTTTGAATGCTCAGAATGACTCTCTACACGATGTTAGAGAGGAGGGGGAGTTCACCCCAGTTCTTTCTAAAAAGTCTAAGAAGTTGTTAAAGCAAGTTGAAAAAACAAAGAAGAAGTTCCTCGTAAACCCACTGGACGACGTCCCCCTAACATGGGAGCTAGTCTCAAGTGCTATTGATGAAGGTTCTCTACTGGAATGCCCGCGGTATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

174

Amino Acids

18.75

Weight (kDa)

5.06

Isoelectric Point (pI)

52.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013839)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58900
fragaria_vesca FvH4_3g38150
malus_domestica MD03G1076200.v1.1 MD11G1080800.v1.1
prunus_persica Prupe.6G061100_v2.0.a1
pyrus_communis pycom03g06050 pycom11g06890
rosa_chinensis RchiOBHm_Chr5g0068581
rosa_laevigata RLG00000035982
rosa_multiflora Rmu_sc0004721.1_g000002
rosa_roxburghii Rroxscaffold_1G00012280
rosa_rugosa Rorug05G0391600
rosa_samantha Rh5AG449300 Rh5BG467500 Rh5CG489300 Rh5DG480900
rosa_wichuraiana Rw5G041950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 453
AccII CGCG 1 cut(s) 514
AciI CCGC 3 cut(s) 224, 512, 514
AcyI GRCGYC 1 cut(s) 450
AfiI CCNNNNNNNGG 2 cut(s) 462, 463
AgsI TTSAA 3 cut(s) 38, 316, 410
AjnI CCWGG 1 cut(s) 40
AloI GAACNNNNNNTCC 2 cut(s) 344, 376
AluBI AGCT 1 cut(s) 469
AluI AGCT 1 cut(s) 469
Alw26I GTCTC 1 cut(s) 478
AoxI GGCC 1 cut(s) 249
AseI ATTAAT 1 cut(s) 273
Asp700I GAANNNNTTC 2 cut(s) 18, 425
AsuC2I CCSGG 2 cut(s) 120, 213
AsuHPI GGTGA 1 cut(s) 355
BarI GAAGNNNNNNTAC 2 cut(s) 483, 515
BciT130I CCWGG 1 cut(s) 42
BcnI CCSGG 2 cut(s) 120, 213
BcoDI GTCTC 1 cut(s) 478
BfaI CTAG 4 cut(s) 24, 195, 255, 470
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
Bme1390I CCNGG 3 cut(s) 42, 120, 213
BmrFI CCNGG 3 cut(s) 42, 120, 213
BmrI ACTGGG 1 cut(s) 362
BmuI ACTGGG 1 cut(s) 362
BplI GAGNNNNNCTC 2 cut(s) 458, 490
BpuEI CTTGAG 2 cut(s) 142, 460
BpuMI CCSGG 2 cut(s) 120, 213
BsaHI GRCGYC 1 cut(s) 450
BsaJI CCNNGG 2 cut(s) 41, 512
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 2 cut(s) 462, 463
Bse1I ACTGG 4 cut(s) 80, 368, 447, 507
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 41, 512
BseGI GGATG 1 cut(s) 300
BseLI CCNNNNNNNGG 2 cut(s) 462, 463
BseMII CTCAG 2 cut(s) 231, 335
BseNI ACTGG 4 cut(s) 80, 368, 447, 507
BseRI GAGGAG 1 cut(s) 365
BseYI CCCAGC 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 514
BshFI GGCC 1 cut(s) 251
BsiSI CCGG 2 cut(s) 119, 213
BslFI GGGAC 2 cut(s) 80, 437
BslI CCNNNNNNNGG 2 cut(s) 462, 463
BsmAI GTCTC 1 cut(s) 478
BsmFI GGGAC 2 cut(s) 80, 437
BsmI GAATGC 3 cut(s) 151, 322, 512
BsnI GGCC 1 cut(s) 251
BspACI CCGC 3 cut(s) 224, 512, 514
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 2 cut(s) 232, 334
BspFNI CGCG 1 cut(s) 514
BsrI ACTGG 4 cut(s) 80, 368, 447, 507
BssECI CCNNGG 2 cut(s) 41, 512
BssNI GRCGYC 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 450
BstC8I GCNNGC 1 cut(s) 512
BstDEI CTNAG 3 cut(s) 240, 321, 387
BstDSI CCRYGG 1 cut(s) 512
BstF5I GGATG 1 cut(s) 300
BstFNI CGCG 1 cut(s) 514
BstMAI GTCTC 1 cut(s) 478
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 3 cut(s) 40, 118, 211
BstUI CGCG 1 cut(s) 514
BsuRI GGCC 1 cut(s) 251
BtgI CCRYGG 1 cut(s) 512
BtsCI GGATG 1 cut(s) 300
BtsIMutI CAGTG 2 cut(s) 186, 440
Cac8I GCNNGC 1 cut(s) 512
Cfr42I CCGCGG 1 cut(s) 515
CviAII CATG 1 cut(s) 462
CviJI RGCY 7 cut(s) 10, 123, 223, 251, 293, 310, 469
CviKI_1 RGCY 7 cut(s) 10, 123, 223, 251, 293, 310, 469
DdeI CTNAG 3 cut(s) 240, 321, 387
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 40
FaeI CATG 1 cut(s) 465
FaiI YATR 1 cut(s) 463
FaqI GGGAC 2 cut(s) 80, 437
FatI CATG 1 cut(s) 461
FauI CCCGC 1 cut(s) 519
Fnu4HI GCNGC 1 cut(s) 224
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 224
FspBI CTAG 4 cut(s) 24, 195, 255, 470
GluI GCNGC 1 cut(s) 224
GsaI CCCAGC 1 cut(s) 139
HaeIII GGCC 1 cut(s) 251
HapII CCGG 2 cut(s) 119, 213
Hin1I GRCGYC 1 cut(s) 450
Hin1II CATG 1 cut(s) 465
HinfI GANTC 2 cut(s) 191, 329
HpaII CCGG 2 cut(s) 119, 213
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 3 cut(s) 94, 363, 436
Hpy188I TCNGA 2 cut(s) 234, 324
Hpy188III TCNNGA 1 cut(s) 85
Hpy8I GTNNAC 3 cut(s) 94, 363, 436
Hpy99I CGWCG 1 cut(s) 452
HpyAV CCTTC 3 cut(s) 103, 288, 485
HpyCH4IV ACGT 1 cut(s) 450
HpyF3I CTNAG 3 cut(s) 240, 321, 387
HpySE526I ACGT 1 cut(s) 450
Hsp92I GRCGYC 1 cut(s) 450
Hsp92II CATG 1 cut(s) 465
KspI CCGCGG 1 cut(s) 515
LmnI GCTCC 2 cut(s) 154, 466
MaeI CTAG 4 cut(s) 24, 195, 255, 470
MaeII ACGT 1 cut(s) 450
MboII GAAGA 2 cut(s) 68, 433
MluCI AATT 1 cut(s) 270
MlyI GAGTC 1 cut(s) 323
MnlI CCTC 7 cut(s) 52, 219, 235, 262, 343, 346, 440
MroXI GAANNNNTTC 2 cut(s) 18, 425
MseI TTAA 2 cut(s) 273, 398
MspA1I CMGCKG 1 cut(s) 514
MspI CCGG 2 cut(s) 119, 213
MspR9I CCNGG 3 cut(s) 42, 120, 213
Mva1269I GAATGC 3 cut(s) 151, 322, 512
MvaI CCWGG 1 cut(s) 42
MvnI CGCG 1 cut(s) 514
NciI CCSGG 2 cut(s) 120, 213
NlaIII CATG 1 cut(s) 465
PctI GAATGC 3 cut(s) 151, 322, 512
PdmI GAANNNNTTC 2 cut(s) 18, 425
PfeI GAWTC 1 cut(s) 191
PflFI GACNNNGTC 1 cut(s) 449
PkrI GCNGC 1 cut(s) 225
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
PshBI ATTAAT 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 40
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 1 cut(s) 40
PsyI GACNNNGTC 1 cut(s) 449
SacII CCGCGG 1 cut(s) 515
SaqAI TTAA 2 cut(s) 273, 398
SatI GCNGC 1 cut(s) 224
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 3 cut(s) 42, 120, 213
SetI ASST 7 cut(s) 43, 63, 114, 246, 453, 471, 496
Sfr303I CCGCGG 1 cut(s) 515
SgrBI CCGCGG 1 cut(s) 515
SmlI CTYRAG 2 cut(s) 157, 475
SmoI CTYRAG 2 cut(s) 157, 475
Sse9I AATT 1 cut(s) 270
SsiI CCGC 3 cut(s) 224, 512, 514
SspMI CTAG 4 cut(s) 24, 195, 255, 470
StyD4I CCNGG 3 cut(s) 40, 118, 211
TaiI ACGT 1 cut(s) 453
TasI AATT 1 cut(s) 270
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 2 cut(s) 273, 398
Tru9I TTAA 2 cut(s) 273, 398
TscAI CASTG 2 cut(s) 193, 447
TspDTI ATGAA 3 cut(s) 17, 122, 504
TspRI CASTG 2 cut(s) 193, 447
Tth111I GACNNNGTC 1 cut(s) 449
VspI ATTAAT 1 cut(s) 273
XmnI GAANNNNTTC 2 cut(s) 18, 425
XspI CTAG 4 cut(s) 24, 195, 255, 470
ZraI GACGTC 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.