Rh5DG480900
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0013839
Physical Location & Seq
Forward (+)
75857668 .. 75860185
2518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG480900.1

Sequence Viewer

Length: 903 bp
ATGAAGCTGGAAATGGAAATTCTATCCCCTTCATCCTATTTCTTAGCCTCGGATTGGCTCCTTGAGGAGACCAAGAGCTCGAAATGGACTCCAGCGGAGAACAAGATGTTCGAAAACGCCTTGGCCTTGCACGACAAGGATACGCCGGACCGGTGGCACAAGGTGGCGGCGATGATACCTGGGAAGACGGTAGGGGATGTGGTGAAGCAGTACAAGGAGTTGGAAGCTGATGTGGGAAAAATCGAGGCGGGCCTAGTCCCAATTCCGGGATATGGTACCTCCCCATTCACATTGGAATGGGTGAATAGGCATGGCTATGATGGATTCAAACAAACTTATGGGATTGGTGGCAAGAGATCTTCATCAACTAGACCTGCTGATCATGAAAGAAAGAAAGGAGTTCCATGGACAGAGGATGAACACAAGCTGTTTTTAATGGGACTGAAAAAGTACGGCAAAGGGGACTGGAGGAACATTTCTCGGAATTTCGTGGTAACCCGAACCCCGACTCAGGTGGCTAGTCATGCACAGAAGTACTTTATCAGGCAGCATTCAGGGGGAAAAGATAAGAGAAGAGCCAGCATACATGATATAACAACTGTGAATCTCAGTGATACCAGAACTCCATCTCCAGATAACAAGCCTCCCTCGCCGCCGGATCACCACCACTCAGCTGCTTTCCCTCAGCAGCCGAATTCTGCCAGGATCCCGCCTTTCCAGTGGCATCAGGGCGGCAATGGAGCAAACATGGCTTTTGGTCAAGCTCATGGGAACATGTTCATGTCCAATACTTTCGGTATTGGTTCTTATGGACTTAACAAAAGCGCGGTTCATGAATCTTACTATGCACCTCAGAATATGGTTTTTCAGATGCAATCCGCACAGCACTACCCTCATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

300

Amino Acids

33.69

Weight (kDa)

9.33

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 28 - 72 1.8e-06 Myb-like DNA-binding domain
Myb_DNA-binding_2 PF23082 28 - 75 4.1e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 134 - 180 1.2e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013839)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58900
fragaria_vesca FvH4_3g38150
malus_domestica MD03G1076200.v1.1 MD11G1080800.v1.1
prunus_persica Prupe.6G061100_v2.0.a1
pyrus_communis pycom03g06050 pycom11g06890
rosa_chinensis RchiOBHm_Chr5g0068581
rosa_laevigata RLG00000035982
rosa_multiflora Rmu_sc0004721.1_g000002
rosa_roxburghii Rroxscaffold_1G00012280
rosa_rugosa Rorug05G0391600
rosa_samantha Rh5AG449300 Rh5BG467500 Rh5CG489300 Rh5DG480900
rosa_wichuraiana Rw5G041950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 382
Acc65I GGTACC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 275
AccII CGCG 1 cut(s) 827
AciI CCGC 8 cut(s) 95, 167, 248, 653, 710, 732, 827, 879
AclWI GGATC 3 cut(s) 666, 700, 713
AcsI RAATTY 3 cut(s) 18, 484, 694
AdeI CACNNNGTG 1 cut(s) 163
AfaI GTAC 4 cut(s) 212, 277, 452, 536
AfiI CCNNNNNNNGG 5 cut(s) 54, 265, 266, 272, 511
AflIII ACRYGT 1 cut(s) 774
AgeI ACCGGT 1 cut(s) 150
AgsI TTSAA 1 cut(s) 328
AjnI CCWGG 2 cut(s) 178, 701
AloI GAACNNNNNNTCC 2 cut(s) 613, 645
AluBI AGCT 6 cut(s) 7, 78, 227, 427, 674, 764
AluI AGCT 6 cut(s) 7, 78, 227, 427, 674, 764
Alw21I GWGCWC 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 3 cut(s) 666, 700, 713
AoxI GGCC 2 cut(s) 123, 250
ApeKI GCWGC 3 cut(s) 547, 674, 688
ApoI RAATTY 3 cut(s) 18, 484, 694
AsiGI ACCGGT 1 cut(s) 150
Asp700I GAANNNNTTC 1 cut(s) 776
Asp718I GGTACC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 827
AspS9I GGNCC 2 cut(s) 148, 250
AsuC2I CCSGG 1 cut(s) 267
AsuHPI GGTGA 3 cut(s) 214, 313, 653
AsuII TTCGAA 1 cut(s) 111
AvaII GGWCC 1 cut(s) 148
BamHI GGATCC 1 cut(s) 705
BanI GGYRCC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 80
BbvCI CCTCAGC 1 cut(s) 684
BbvI GCAGC 3 cut(s) 559, 661, 700
BccI CCATC 2 cut(s) 314, 634
BceAI ACGGC 1 cut(s) 469
BciT130I CCWGG 2 cut(s) 180, 703
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 1 cut(s) 379
BcnI CCSGG 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 3 cut(s) 254, 369, 519
BfuAI ACCTGC 1 cut(s) 382
BfuI GTATCC 1 cut(s) 133
BglII AGATCT 1 cut(s) 356
BisI GCNGC 6 cut(s) 168, 548, 653, 675, 689, 733
BlsI GCNGC 6 cut(s) 169, 549, 654, 676, 690, 734
BmcAI AGTACT 1 cut(s) 536
Bme1390I CCNGG 3 cut(s) 180, 267, 703
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 2 cut(s) 148, 250
BmiI GGNNCC 3 cut(s) 59, 277, 707
BmrFI CCNGG 3 cut(s) 180, 267, 703
BmsI GCATC 2 cut(s) 733, 861
BpiI GAAGAC 1 cut(s) 191
BpmI CTGGAG 3 cut(s) 75, 487, 615
Bpu10I CCTNAGC 1 cut(s) 684
Bpu14I TTCGAA 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 267
BsaBI GATNNNNATC 1 cut(s) 361
BsaI GGTCTC 1 cut(s) 62
BsaJI CCNNGG 4 cut(s) 48, 120, 179, 404
BsaWI WCCGGW 1 cut(s) 150
BsaXI ACNNNNNCTCC 4 cut(s) 607, 613, 637, 643
Bsc4I CCNNNNNNNGG 5 cut(s) 54, 265, 266, 272, 511
Bse118I RCCGGY 1 cut(s) 150
Bse1I ACTGG 2 cut(s) 470, 718
Bse3DI GCAATG 1 cut(s) 742
Bse8I GATNNNNATC 1 cut(s) 361
BseBI CCWGG 2 cut(s) 180, 703
BseDI CCNNGG 4 cut(s) 48, 120, 179, 404
BseGI GGATG 3 cut(s) 32, 202, 421
BseJI GATNNNNATC 1 cut(s) 361
BseLI CCNNNNNNNGG 5 cut(s) 54, 265, 266, 272, 511
BseMI GCAATG 1 cut(s) 742
BseMII CTCAG 5 cut(s) 524, 622, 684, 698, 866
BseNI ACTGG 2 cut(s) 470, 718
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 3 cut(s) 559, 661, 700
Bsh1236I CGCG 1 cut(s) 827
BshFI GGCC 2 cut(s) 125, 252
BshNI GGYRCC 1 cut(s) 275
BshTI ACCGGT 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 80
BsiSI CCGG 4 cut(s) 146, 151, 266, 656
BslFI GGGAC 3 cut(s) 242, 453, 476
BslI CCNNNNNNNGG 5 cut(s) 54, 265, 266, 272, 511
BsmAI GTCTC 1 cut(s) 62
BsmFI GGGAC 3 cut(s) 242, 453, 476
BsmI GAATGC 1 cut(s) 550
BsnI GGCC 2 cut(s) 125, 252
Bso31I GGTCTC 1 cut(s) 62
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 80
Bsp143I GATC 4 cut(s) 356, 379, 658, 705
Bsp19I CCATGG 1 cut(s) 404
BspACI CCGC 8 cut(s) 95, 167, 248, 653, 710, 732, 827, 879
BspANI GGCC 2 cut(s) 125, 252
BspCNI CTCAG 5 cut(s) 523, 621, 683, 697, 865
BspFNI CGCG 1 cut(s) 827
BspHI TCATGA 2 cut(s) 382, 832
BspLI GGNNCC 3 cut(s) 59, 277, 707
BspMI ACCTGC 1 cut(s) 382
BspPI GGATC 3 cut(s) 666, 700, 713
BspQI GCTCTTC 1 cut(s) 568
BspT104I TTCGAA 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 742
BsrFI RCCGGY 1 cut(s) 150
BsrI ACTGG 2 cut(s) 470, 718
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 4 cut(s) 48, 120, 179, 404
BssMI GATC 4 cut(s) 356, 379, 658, 705
BssT1I CCWWGG 2 cut(s) 120, 404
Bst2UI CCWGG 2 cut(s) 180, 703
Bst4CI ACNGT 2 cut(s) 190, 601
Bst6I CTCTTC 1 cut(s) 568
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 2 cut(s) 250, 580
BstDEI CTNAG 6 cut(s) 43, 510, 608, 670, 684, 852
BstDSI CCRYGG 1 cut(s) 404
BstEII GGTNACC 1 cut(s) 493
BstF5I GGATG 3 cut(s) 32, 202, 421
BstFNI CGCG 1 cut(s) 827
BstHHI GCGC 1 cut(s) 827
BstKTI GATC 4 cut(s) 359, 382, 661, 708
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 4 cut(s) 356, 379, 658, 705
BstMWI GCNNNNNNNGC 3 cut(s) 524, 649, 749
BstNI CCWGG 2 cut(s) 180, 703
BstNSI RCATGY 1 cut(s) 778
BstPI GGTNACC 1 cut(s) 493
BstSCI CCNGG 3 cut(s) 178, 265, 701
BstUI CGCG 1 cut(s) 827
BstV1I GCAGC 3 cut(s) 559, 661, 700
BstV2I GAAGAC 1 cut(s) 191
BstX2I RGATCY 2 cut(s) 356, 705
BstYI RGATCY 2 cut(s) 356, 705
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 2 cut(s) 125, 252
BtgI CCRYGG 1 cut(s) 404
BtgZI GCGATG 1 cut(s) 185
BtsCI GGATG 3 cut(s) 32, 202, 421
BtsIMutI CAGTG 2 cut(s) 616, 725
BveI ACCTGC 1 cut(s) 382
Cac8I GCNNGC 2 cut(s) 250, 580
CciI TCATGA 2 cut(s) 382, 832
CfoI GCGC 1 cut(s) 827
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 2 cut(s) 148, 250
CpoI CGGWCCG 1 cut(s) 148
Csp6I GTAC 4 cut(s) 211, 276, 451, 535
CspAI ACCGGT 1 cut(s) 150
CspI CGGWCCG 1 cut(s) 148
CviQI GTAC 4 cut(s) 211, 276, 451, 535
DdeI CTNAG 6 cut(s) 43, 510, 608, 670, 684, 852
DpnI GATC 4 cut(s) 358, 381, 660, 707
DpnII GATC 4 cut(s) 356, 379, 658, 705
DraIII CACNNNGTG 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 568
EarI CTCTTC 1 cut(s) 568
Ecl136II GAGCTC 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 120, 404
Eco24I GRGCYC 1 cut(s) 80
Eco31I GGTCTC 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 78
Eco91I GGTNACC 1 cut(s) 493
EcoICRI GAGCTC 1 cut(s) 78
EcoO65I GGTNACC 1 cut(s) 493
EcoRI GAATTC 1 cut(s) 694
EcoRII CCWGG 2 cut(s) 178, 701
EcoT14I CCWWGG 2 cut(s) 120, 404
EcoT38I GRGCYC 1 cut(s) 80
ErhI CCWWGG 2 cut(s) 120, 404
FaqI GGGAC 3 cut(s) 242, 453, 476
FauI CCCGC 2 cut(s) 241, 717
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 6 cut(s) 168, 548, 653, 675, 689, 733
FokI GGATG 3 cut(s) 19, 209, 428
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 6 cut(s) 168, 548, 653, 675, 689, 733
FspBI CTAG 3 cut(s) 254, 369, 519
GlaI GCGC 1 cut(s) 826
GluI GCNGC 6 cut(s) 168, 548, 653, 675, 689, 733
GsuI CTGGAG 3 cut(s) 75, 487, 615
HaeIII GGCC 2 cut(s) 125, 252
HapII CCGG 4 cut(s) 146, 151, 266, 656
HhaI GCGC 1 cut(s) 827
Hin6I GCGC 1 cut(s) 825
HinP1I GCGC 1 cut(s) 825
HinfI GANTC 5 cut(s) 88, 324, 508, 604, 836
HpaII CCGG 4 cut(s) 146, 151, 266, 656
HphI GGTGA 3 cut(s) 214, 313, 653
Hpy188I TCNGA 4 cut(s) 52, 483, 855, 870
Hpy188III TCNNGA 3 cut(s) 383, 632, 833
HpyAV CCTTC 1 cut(s) 39
HpyCH4III ACNGT 2 cut(s) 190, 601
HpyCH4V TGCA 4 cut(s) 130, 527, 848, 874
HpyF10VI GCNNNNNNNGC 3 cut(s) 524, 649, 749
HpyF3I CTNAG 6 cut(s) 43, 510, 608, 670, 684, 852
HspAI GCGC 1 cut(s) 825
KpnI GGTACC 1 cut(s) 279
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 4 cut(s) 356, 379, 658, 705
LguI GCTCTTC 1 cut(s) 568
LmnI GCTCC 2 cut(s) 63, 740
Lsp1109I GCAGC 3 cut(s) 559, 661, 700
LweI GCATC 2 cut(s) 733, 861
MaeI CTAG 3 cut(s) 254, 369, 519
MaeIII GTNAC 1 cut(s) 493
MalI GATC 4 cut(s) 358, 381, 660, 707
MboI GATC 4 cut(s) 356, 379, 658, 705
MboII GAAGA 3 cut(s) 196, 351, 585
MflI RGATCY 2 cut(s) 356, 705
MhlI GDGCHC 1 cut(s) 80
MluCI AATT 4 cut(s) 18, 261, 484, 694
MlyI GAGTC 2 cut(s) 82, 502
MmeI TCCRAC 1 cut(s) 201
MroXI GAANNNNTTC 1 cut(s) 776
MseI TTAA 2 cut(s) 434, 816
MslI CAYNNNNRTG 3 cut(s) 295, 315, 779
MspA1I CMGCKG 2 cut(s) 95, 674
MspI CCGG 4 cut(s) 146, 151, 266, 656
MspR9I CCNGG 3 cut(s) 180, 267, 703
Mva1269I GAATGC 1 cut(s) 550
MvaI CCWGG 2 cut(s) 180, 703
MvnI CGCG 1 cut(s) 827
MwoI GCNNNNNNNGC 3 cut(s) 524, 649, 749
NciI CCSGG 1 cut(s) 267
NcoI CCATGG 1 cut(s) 404
NdeII GATC 4 cut(s) 356, 379, 658, 705
NlaIV GGNNCC 3 cut(s) 59, 277, 707
NspI RCATGY 1 cut(s) 778
NspV TTCGAA 1 cut(s) 111
PagI TCATGA 2 cut(s) 382, 832
PciI ACATGT 1 cut(s) 774
PciSI GCTCTTC 1 cut(s) 568
PctI GAATGC 1 cut(s) 550
PdmI GAANNNNTTC 1 cut(s) 776
PfeI GAWTC 3 cut(s) 324, 604, 836
PfoI TCCNGGA 1 cut(s) 265
PinAI ACCGGT 1 cut(s) 150
PkrI GCNGC 6 cut(s) 169, 549, 654, 676, 690, 734
PleI GAGTC 2 cut(s) 82, 502
PpsI GAGTC 2 cut(s) 82, 502
PscI ACATGT 1 cut(s) 774
Psp124BI GAGCTC 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 178, 701
PspEI GGTNACC 1 cut(s) 493
PspGI CCWGG 2 cut(s) 178, 701
PspN4I GGNNCC 3 cut(s) 59, 277, 707
PspPI GGNCC 2 cut(s) 148, 250
PsuI RGATCY 2 cut(s) 356, 705
PvuII CAGCTG 1 cut(s) 674
RsaI GTAC 4 cut(s) 212, 277, 452, 536
RsaNI GTAC 4 cut(s) 211, 276, 451, 535
RseI CAYNNNNRTG 3 cut(s) 295, 315, 779
Rsr2I CGGWCCG 1 cut(s) 148
RsrII CGGWCCG 1 cut(s) 148
SacI GAGCTC 1 cut(s) 80
SapI GCTCTTC 1 cut(s) 568
SaqAI TTAA 2 cut(s) 434, 816
SatI GCNGC 6 cut(s) 168, 548, 653, 675, 689, 733
Sau3AI GATC 4 cut(s) 356, 379, 658, 705
Sau96I GGNCC 2 cut(s) 148, 250
ScaI AGTACT 1 cut(s) 536
SchI GAGTC 2 cut(s) 82, 502
ScrFI CCNGG 3 cut(s) 180, 267, 703
SduI GDGCHC 1 cut(s) 80
SfaNI GCATC 2 cut(s) 733, 861
SfuI TTCGAA 1 cut(s) 111
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 3 cut(s) 295, 315, 779
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 4 cut(s) 18, 261, 484, 694
SsiI CCGC 8 cut(s) 95, 167, 248, 653, 710, 732, 827, 879
SspMI CTAG 3 cut(s) 254, 369, 519
SstI GAGCTC 1 cut(s) 80
StyD4I CCNGG 3 cut(s) 178, 265, 701
StyI CCWWGG 2 cut(s) 120, 404
TaaI ACNGT 2 cut(s) 190, 601
TaqI TCGA 3 cut(s) 80, 111, 243
TasI AATT 4 cut(s) 18, 261, 484, 694
TatI WGTACW 2 cut(s) 210, 534
TauI GCSGC 3 cut(s) 170, 655, 735
TfiI GAWTC 3 cut(s) 324, 604, 836
Tru1I TTAA 2 cut(s) 434, 816
Tru9I TTAA 2 cut(s) 434, 816
TscAI CASTG 2 cut(s) 616, 725
TseI GCWGC 3 cut(s) 547, 674, 688
TspDTI ATGAA 8 cut(s) 17, 21, 351, 399, 432, 769, 821, 849
TspRI CASTG 2 cut(s) 616, 725
VpaK11BI GGWCC 1 cut(s) 148
XapI RAATTY 3 cut(s) 18, 484, 694
XceI RCATGY 1 cut(s) 778
XmnI GAANNNNTTC 1 cut(s) 776
XspI CTAG 3 cut(s) 254, 369, 519
ZrmI AGTACT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.