FvH4_3g38150
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013839
Physical Location & Seq
Forward (+)
32581726 .. 32583948
2223 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38150.t1

Sequence Viewer

Length: 906 bp
ATGAAGTTGGAAATGGGAATTCTCTCCCCTTCATCTTACTTCTCTGACTCCAATTGGCTCCCTGAGGAGACCAAGAGCGCGAAATGGACTCCTGCGGAGAACAAGATGTTCGAAAACGCCTTGGCGTTGCACGACAAGGATACGCCGGACAGGTGGCACAAGGTGGCGGAGATGATACCTGGGAAGACTGTAGGGGATGTGGTGCAGCAGTACAAGGAGTTGGAAGCTGATGTGGGGAAGATCGAAGCGGGGTTAGTTCCTATTCCGGGATATGGTACCTCTCCGTTCACATTGGAATGGGTGAATAGACATGGCTATGATATTGGATTCAAACAAACTTATGGGATTGGTGGCAAGAAATCTTCATCAACTAGACCAGCTGATCACGAAAGAAAGAAAGGAGTTCCTTGGACAGAGGATGAGCACAAGCTGTTTTTAATGGGACTGAAGAAGTACGGCAAAGGGGACTGGAGGAACATTTCTCGGAATTTTGTGGTGACTCGAACCCCGACTCAGGTGGCTAGTCATGCACAAAAGTACTTTATCAGGCAGCATTCAGGGGGGAAAGACAAGAGAAGAGCTAGCATACATGATATAACAACTGTGAATCTCGGTGACACCTGCAGAACTCCATCTCCAGACAACAAGCCTCCCTCTCCGGATCACCACCATTCTTCTGCCTTCTCTCAGCAGCCGAATTCTGCTAGGATTCCGCCTTTCCAGTGGCAACAGGGCGGCAATGGAGCAAACATGGCTTTTGGTCAGGCTCATGGGAACTTGTTCATGTCCAATACTCATGGGATTGGTTCTTATGGACTAAACAAAAGTTCAGTTCATGAGTCATACTATGCACCTCAGAATTTGGCTTTTCAGATGCAATCCGCACACCACTACCTGCATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

302

Amino Acids

33.69

Weight (kDa)

9.17

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 28 - 72 6.7e-07 Myb-like DNA-binding domain
Myb_DNA-binding_2 PF23082 28 - 75 3.6e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 135 - 181 1.2e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013839)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58900
fragaria_vesca FvH4_3g38150
malus_domestica MD03G1076200.v1.1 MD11G1080800.v1.1
prunus_persica Prupe.6G061100_v2.0.a1
pyrus_communis pycom03g06050 pycom11g06890
rosa_chinensis RchiOBHm_Chr5g0068581
rosa_laevigata RLG00000035982
rosa_multiflora Rmu_sc0004721.1_g000002
rosa_roxburghii Rroxscaffold_1G00012280
rosa_rugosa Rorug05G0391600
rosa_samantha Rh5AG449300 Rh5BG467500 Rh5CG489300 Rh5DG480900
rosa_wichuraiana Rw5G041950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 629
Acc36I ACCTGC 1 cut(s) 629
Acc65I GGTACC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 275
AccII CGCG 1 cut(s) 80
AccIII TCCGGA 1 cut(s) 658
AciI CCGC 6 cut(s) 95, 167, 248, 713, 735, 882
AclWI GGATC 1 cut(s) 669
AcsI RAATTY 4 cut(s) 18, 487, 697, 859
AcuI CTGAAG 1 cut(s) 467
AdeI CACNNNGTG 1 cut(s) 163
AfaI GTAC 4 cut(s) 212, 277, 455, 539
AfiI CCNNNNNNNGG 3 cut(s) 266, 272, 514
AgsI TTSAA 1 cut(s) 331
AjnI CCWGG 1 cut(s) 178
AloI GAACNNNNNNTCC 2 cut(s) 619, 651
AluBI AGCT 4 cut(s) 227, 380, 430, 581
AluI AGCT 4 cut(s) 227, 380, 430, 581
Alw21I GWGCWC 1 cut(s) 426
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 1 cut(s) 669
Aor13HI TCCGGA 1 cut(s) 658
ApeKI GCWGC 3 cut(s) 205, 550, 691
ApoI RAATTY 4 cut(s) 18, 487, 697, 859
Asp700I GAANNNNTTC 1 cut(s) 779
Asp718I GGTACC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 80
AsuC2I CCSGG 1 cut(s) 267
AsuHPI GGTGA 4 cut(s) 313, 508, 626, 656
AsuII TTCGAA 1 cut(s) 111
AsuNHI GCTAGC 1 cut(s) 581
AxyI CCTNAGG 1 cut(s) 63
BanI GGYRCC 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 426
BbvI GCAGC 3 cut(s) 217, 562, 703
BccI CCATC 1 cut(s) 640
BceAI ACGGC 1 cut(s) 472
BciT130I CCWGG 1 cut(s) 180
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 4 cut(s) 372, 522, 582, 705
BfmI CTRYAG 2 cut(s) 189, 622
BfuAI ACCTGC 1 cut(s) 629
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 4 cut(s) 206, 551, 692, 736
BlsI GCNGC 4 cut(s) 207, 552, 693, 737
BmcAI AGTACT 1 cut(s) 539
Bme1390I CCNGG 2 cut(s) 180, 267
BmiI GGNNCC 2 cut(s) 59, 277
BmrFI CCNGG 2 cut(s) 180, 267
BmsI GCATC 1 cut(s) 864
BmtI GCTAGC 1 cut(s) 585
BpiI GAAGAC 1 cut(s) 191
BpmI CTGGAG 2 cut(s) 490, 621
Bpu14I TTCGAA 1 cut(s) 111
BpuMI CCSGG 1 cut(s) 267
BsaI GGTCTC 1 cut(s) 62
BsaJI CCNNGG 3 cut(s) 120, 179, 407
BsaWI WCCGGW 1 cut(s) 658
BsaXI ACNNNNNCTCC 2 cut(s) 619, 649
Bsc4I CCNNNNNNNGG 3 cut(s) 266, 272, 514
Bse1I ACTGG 2 cut(s) 473, 721
Bse21I CCTNAGG 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 745
BseAI TCCGGA 1 cut(s) 658
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 3 cut(s) 120, 179, 407
BseGI GGATG 2 cut(s) 202, 424
BseLI CCNNNNNNNGG 3 cut(s) 266, 272, 514
BseMI GCAATG 1 cut(s) 745
BseMII CTCAG 4 cut(s) 54, 527, 701, 869
BseNI ACTGG 2 cut(s) 473, 721
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 3 cut(s) 217, 562, 703
BsgI GTGCAG 1 cut(s) 224
Bsh1236I CGCG 1 cut(s) 80
BshNI GGYRCC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 426
BsiSI CCGG 3 cut(s) 146, 266, 659
BslFI GGGAC 2 cut(s) 456, 479
BslI CCNNNNNNNGG 3 cut(s) 266, 272, 514
BsmAI GTCTC 1 cut(s) 62
BsmFI GGGAC 2 cut(s) 456, 479
BsmI GAATGC 1 cut(s) 553
Bso31I GGTCTC 1 cut(s) 62
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 426
Bsp13I TCCGGA 1 cut(s) 658
Bsp143I GATC 3 cut(s) 240, 382, 661
BspACI CCGC 6 cut(s) 95, 167, 248, 713, 735, 882
BspCNI CTCAG 4 cut(s) 55, 526, 700, 868
BspEI TCCGGA 1 cut(s) 658
BspFNI CGCG 1 cut(s) 80
BspHI TCATGA 1 cut(s) 835
BspLI GGNNCC 2 cut(s) 59, 277
BspMAI CTGCAG 1 cut(s) 626
BspMI ACCTGC 1 cut(s) 629
BspOI GCTAGC 1 cut(s) 585
BspPI GGATC 1 cut(s) 669
BspQI GCTCTTC 1 cut(s) 571
BspT104I TTCGAA 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 745
BsrI ACTGG 2 cut(s) 473, 721
BssECI CCNNGG 3 cut(s) 120, 179, 407
BssMI GATC 3 cut(s) 240, 382, 661
BssT1I CCWWGG 2 cut(s) 120, 407
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 2 cut(s) 190, 604
Bst6I CTCTTC 1 cut(s) 571
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 583
BstDEI CTNAG 4 cut(s) 63, 513, 687, 855
BstF5I GGATG 2 cut(s) 202, 424
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 3 cut(s) 243, 385, 664
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 3 cut(s) 240, 382, 661
BstMWI GCNNNNNNNGC 2 cut(s) 527, 752
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 2 cut(s) 178, 265
BstSFI CTRYAG 2 cut(s) 189, 622
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 3 cut(s) 217, 562, 703
BstV2I GAAGAC 1 cut(s) 191
Bsu36I CCTNAGG 1 cut(s) 63
BsuI GTATCC 1 cut(s) 133
BtsCI GGATG 2 cut(s) 202, 424
BtsIMutI CAGTG 1 cut(s) 728
BveI ACCTGC 1 cut(s) 629
Cac8I GCNNGC 1 cut(s) 583
CciI TCATGA 1 cut(s) 835
CfoI GCGC 1 cut(s) 80
Csp6I GTAC 4 cut(s) 211, 276, 454, 538
CviAII CATG 9 cut(s) 311, 527, 590, 751, 770, 784, 797, 836, 899
CviQI GTAC 4 cut(s) 211, 276, 454, 538
DdeI CTNAG 4 cut(s) 63, 513, 687, 855
DpnI GATC 3 cut(s) 242, 384, 663
DpnII GATC 3 cut(s) 240, 382, 661
DraIII CACNNNGTG 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 571
EarI CTCTTC 1 cut(s) 571
EciI GGCGGA 2 cut(s) 182, 702
Eco130I CCWWGG 2 cut(s) 120, 407
Eco31I GGTCTC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 467
Eco81I CCTNAGG 1 cut(s) 63
EcoRI GAATTC 2 cut(s) 18, 697
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 2 cut(s) 120, 407
ErhI CCWWGG 2 cut(s) 120, 407
FaeI CATG 9 cut(s) 314, 530, 593, 754, 773, 787, 800, 839, 902
FaqI GGGAC 2 cut(s) 456, 479
FatI CATG 9 cut(s) 310, 526, 589, 750, 769, 783, 796, 835, 898
FauI CCCGC 1 cut(s) 241
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 4 cut(s) 206, 551, 692, 736
FokI GGATG 2 cut(s) 209, 431
Fsp4HI GCNGC 4 cut(s) 206, 551, 692, 736
FspBI CTAG 4 cut(s) 372, 522, 582, 705
GlaI GCGC 1 cut(s) 79
GluI GCNGC 4 cut(s) 206, 551, 692, 736
GsuI CTGGAG 2 cut(s) 490, 621
HapII CCGG 3 cut(s) 146, 266, 659
HhaI GCGC 1 cut(s) 80
Hin1II CATG 9 cut(s) 314, 530, 593, 754, 773, 787, 800, 839, 902
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HinfI GANTC 8 cut(s) 47, 88, 327, 499, 511, 607, 709, 839
HpaII CCGG 3 cut(s) 146, 266, 659
HphI GGTGA 4 cut(s) 313, 508, 626, 656
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 4 cut(s) 46, 486, 858, 873
Hpy188III TCNNGA 4 cut(s) 386, 638, 659, 836
Hpy8I GTNNAC 1 cut(s) 288
HpyAV CCTTC 2 cut(s) 39, 691
HpyCH4III ACNGT 2 cut(s) 190, 604
HpyCH4V TGCA 7 cut(s) 130, 205, 530, 624, 851, 877, 898
HpyF10VI GCNNNNNNNGC 2 cut(s) 527, 752
HpyF3I CTNAG 4 cut(s) 63, 513, 687, 855
Hsp92II CATG 9 cut(s) 314, 530, 593, 754, 773, 787, 800, 839, 902
HspAI GCGC 1 cut(s) 78
Kpn2I TCCGGA 1 cut(s) 658
KpnI GGTACC 1 cut(s) 279
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 3 cut(s) 240, 382, 661
LguI GCTCTTC 1 cut(s) 571
LmnI GCTCC 2 cut(s) 63, 743
Lsp1109I GCAGC 3 cut(s) 217, 562, 703
LweI GCATC 1 cut(s) 864
MaeI CTAG 4 cut(s) 372, 522, 582, 705
MaeIII GTNAC 2 cut(s) 496, 614
MalI GATC 3 cut(s) 242, 384, 663
MboI GATC 3 cut(s) 240, 382, 661
MboII GAAGA 6 cut(s) 196, 250, 354, 460, 588, 666
MfeI CAATTG 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 5 cut(s) 18, 52, 487, 697, 859
MlyI GAGTC 5 cut(s) 41, 82, 493, 505, 848
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 7 cut(s) 58, 289, 409, 465, 660, 664, 864
MroI TCCGGA 1 cut(s) 658
MroXI GAANNNNTTC 1 cut(s) 779
MseI TTAA 1 cut(s) 437
MslI CAYNNNNRTG 2 cut(s) 295, 315
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 3 cut(s) 146, 266, 659
MspR9I CCNGG 2 cut(s) 180, 267
MunI CAATTG 1 cut(s) 52
Mva1269I GAATGC 1 cut(s) 553
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 527, 752
NciI CCSGG 1 cut(s) 267
NdeII GATC 3 cut(s) 240, 382, 661
NheI GCTAGC 1 cut(s) 581
NlaIII CATG 9 cut(s) 314, 530, 593, 754, 773, 787, 800, 839, 902
NlaIV GGNNCC 2 cut(s) 59, 277
NmuCI GTSAC 2 cut(s) 496, 614
NspV TTCGAA 1 cut(s) 111
PagI TCATGA 1 cut(s) 835
PaqCI CACCTGC 1 cut(s) 629
PciSI GCTCTTC 1 cut(s) 571
PctI GAATGC 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 779
PfeI GAWTC 3 cut(s) 327, 607, 709
PfoI TCCNGGA 1 cut(s) 265
PkrI GCNGC 4 cut(s) 207, 552, 693, 737
PleI GAGTC 5 cut(s) 41, 82, 493, 505, 847
PpsI GAGTC 5 cut(s) 41, 82, 493, 505, 847
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 59, 277
PstI CTGCAG 1 cut(s) 626
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 4 cut(s) 212, 277, 455, 539
RsaNI GTAC 4 cut(s) 211, 276, 454, 538
RseI CAYNNNNRTG 2 cut(s) 295, 315
SapI GCTCTTC 1 cut(s) 571
SaqAI TTAA 1 cut(s) 437
SatI GCNGC 4 cut(s) 206, 551, 692, 736
Sau3AI GATC 3 cut(s) 240, 382, 661
ScaI AGTACT 1 cut(s) 539
SchI GAGTC 5 cut(s) 41, 82, 493, 505, 848
ScrFI CCNGG 2 cut(s) 180, 267
SduI GDGCHC 1 cut(s) 426
SfaNI GCATC 1 cut(s) 864
SfcI CTRYAG 2 cut(s) 189, 622
SfuI TTCGAA 1 cut(s) 111
SmiMI CAYNNNNRTG 2 cut(s) 295, 315
Sse9I AATT 5 cut(s) 18, 52, 487, 697, 859
SsiI CCGC 6 cut(s) 95, 167, 248, 713, 735, 882
SspMI CTAG 4 cut(s) 372, 522, 582, 705
StyD4I CCNGG 2 cut(s) 178, 265
StyI CCWWGG 2 cut(s) 120, 407
TaaI ACNGT 2 cut(s) 190, 604
TaqI TCGA 3 cut(s) 111, 243, 502
TasI AATT 5 cut(s) 18, 52, 487, 697, 859
TatI WGTACW 2 cut(s) 210, 537
TauI GCSGC 1 cut(s) 738
TfiI GAWTC 3 cut(s) 327, 607, 709
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TscAI CASTG 1 cut(s) 728
TseFI GTSAC 2 cut(s) 496, 614
TseI GCWGC 3 cut(s) 205, 550, 691
Tsp45I GTSAC 2 cut(s) 496, 614
TspDTI ATGAA 5 cut(s) 17, 21, 354, 772, 824
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 1 cut(s) 728
XapI RAATTY 4 cut(s) 18, 487, 697, 859
XcmI CCANNNNNNNNNTGG 1 cut(s) 896
XmnI GAANNNNTTC 1 cut(s) 779
XspI CTAG 4 cut(s) 372, 522, 582, 705
ZrmI AGTACT 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.