RLG00000035982
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013839
Physical Location & Seq
Forward (+)
74479736 .. 74480842
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035982

Sequence Viewer

Length: 894 bp
ATGGAAATTCTATCCCCTCCATCCTATTTCTCAGCCCCGAATTGGCTCTTTGAGGAGACCAAGAGCTCGAAATGGACTCCAGCGGAGAACAAGATATTCGAAAACGCCTTGGCCTTGCACGACAGGGATACGCCGGACCGGTGGCACAAGGTGGCGGCGATGATACCTGGGAAGACGGTAGGGGATGTGGTGAAGCAGTACAAGGAGTTGGAAGCTGATGTGGGAAAAATCGAGGCGGGGCTAGTCCCTATTCCGGGATATGGTACCTCCCCATTCACATTGGAATGGGTGAATAGGCATGGCTATGATGGATTCAAACAAACTTATGGGATTGGTGGTGGCAAGAGATCTTCATCAACTAGACCTGCTGATCATGAAAGAAAGAAAGGAGTTCCATGGACAGAGGAGGAACACAAGCTGTTTTTAATGGGACTGAAAAAGTACGGCAAAGGGGACTGGAGGAACATTTCTCGGAATTTCGTGGTAACCCGAACCCCTACTCAGGTGGCTAGTCATGCACAGAAGTACTTTATCAGGCAGCATTCAGGGGGAAAAGATAAGAGAAGAGCGAGCATACATGATATAACAACTGTGAATCTCAGTGATACCAGAACTCCATCTCCAGATAACAAGCCTCCCTCGCCGCCGGATCACCACCACTCGGCTGCTTTCCCTCAGCAGCCGAATTCTGCCAGGATCCCGCCTTTCCAGTGGCATCAGGGCGGCAATGGAGCAAACATGGCTTTTGGTCAAGCTCATGGGAACATGTTCATGTCCAATACTTTCGGTATTGGTTCTTATGAACTTAACAAAAGCGCGGTTCATGAATCTTACTATGCACCTCAGAGTATGGTTTTTCAGATGCAATCCGCACAGCACTACCCTCATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

298

Amino Acids

33.34

Weight (kDa)

9.36

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 24 - 68 7.7e-07 Myb-like DNA-binding domain
Myb_DNA-binding_2 PF23082 24 - 71 8.1e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 131 - 177 3.9e-13 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013839)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58900
fragaria_vesca FvH4_3g38150
malus_domestica MD03G1076200.v1.1 MD11G1080800.v1.1
prunus_persica Prupe.6G061100_v2.0.a1
pyrus_communis pycom03g06050 pycom11g06890
rosa_chinensis RchiOBHm_Chr5g0068581
rosa_laevigata RLG00000035982
rosa_multiflora Rmu_sc0004721.1_g000002
rosa_roxburghii Rroxscaffold_1G00012280
rosa_rugosa Rorug05G0391600
rosa_samantha Rh5AG449300 Rh5BG467500 Rh5CG489300 Rh5DG480900
rosa_wichuraiana Rw5G041950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 373
Acc65I GGTACC 1 cut(s) 263
AccB1I GGYRCC 1 cut(s) 263
AccII CGCG 1 cut(s) 818
AciI CCGC 8 cut(s) 83, 155, 236, 644, 701, 723, 818, 870
AclWI GGATC 3 cut(s) 657, 691, 704
AcsI RAATTY 3 cut(s) 6, 475, 685
AdeI CACNNNGTG 1 cut(s) 151
AfaI GTAC 4 cut(s) 200, 265, 443, 527
AfiI CCNNNNNNNGG 6 cut(s) 42, 253, 254, 260, 502, 661
AflIII ACRYGT 1 cut(s) 765
AgeI ACCGGT 1 cut(s) 138
AgsI TTSAA 1 cut(s) 316
AjnI CCWGG 2 cut(s) 166, 692
AloI GAACNNNNNNTCC 2 cut(s) 604, 636
AluBI AGCT 4 cut(s) 66, 215, 418, 755
AluI AGCT 4 cut(s) 66, 215, 418, 755
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 3 cut(s) 657, 691, 704
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 3 cut(s) 538, 665, 679
ApoI RAATTY 3 cut(s) 6, 475, 685
AsiGI ACCGGT 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 767
Asp718I GGTACC 1 cut(s) 263
AspLEI GCGC 1 cut(s) 818
AspS9I GGNCC 1 cut(s) 136
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 3 cut(s) 202, 301, 644
AsuII TTCGAA 1 cut(s) 99
AvaII GGWCC 1 cut(s) 136
BamHI GGATCC 1 cut(s) 696
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 68
BbvCI CCTCAGC 1 cut(s) 675
BbvI GCAGC 3 cut(s) 550, 652, 691
BccI CCATC 3 cut(s) 28, 302, 625
BceAI ACGGC 1 cut(s) 460
BciT130I CCWGG 2 cut(s) 168, 694
BciVI GTATCC 1 cut(s) 121
BclI TGATCA 1 cut(s) 370
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 3 cut(s) 242, 360, 510
BfuAI ACCTGC 1 cut(s) 373
BfuI GTATCC 1 cut(s) 121
BglII AGATCT 1 cut(s) 347
BisI GCNGC 6 cut(s) 156, 539, 644, 666, 680, 724
BlsI GCNGC 6 cut(s) 157, 540, 645, 667, 681, 725
BmcAI AGTACT 1 cut(s) 527
Bme1390I CCNGG 3 cut(s) 168, 255, 694
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 2 cut(s) 265, 698
BmrFI CCNGG 3 cut(s) 168, 255, 694
BmsI GCATC 2 cut(s) 724, 852
BpiI GAAGAC 1 cut(s) 179
BpmI CTGGAG 3 cut(s) 63, 478, 606
Bpu10I CCTNAGC 1 cut(s) 675
Bpu14I TTCGAA 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 255
BsaBI GATNNNNATC 1 cut(s) 352
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 108, 167, 395
BsaWI WCCGGW 1 cut(s) 138
BsaXI ACNNNNNCTCC 4 cut(s) 598, 604, 628, 634
Bsc4I CCNNNNNNNGG 6 cut(s) 42, 253, 254, 260, 502, 661
Bse118I RCCGGY 1 cut(s) 138
Bse1I ACTGG 2 cut(s) 461, 709
Bse3DI GCAATG 1 cut(s) 733
Bse8I GATNNNNATC 1 cut(s) 352
BseBI CCWGG 2 cut(s) 168, 694
BseDI CCNNGG 3 cut(s) 108, 167, 395
BseGI GGATG 2 cut(s) 20, 190
BseJI GATNNNNATC 1 cut(s) 352
BseLI CCNNNNNNNGG 6 cut(s) 42, 253, 254, 260, 502, 661
BseMI GCAATG 1 cut(s) 733
BseMII CTCAG 5 cut(s) 45, 515, 613, 689, 857
BseNI ACTGG 2 cut(s) 461, 709
BseRI GAGGAG 2 cut(s) 68, 419
BseXI GCAGC 3 cut(s) 550, 652, 691
Bsh1236I CGCG 1 cut(s) 818
BshFI GGCC 1 cut(s) 113
BshNI GGYRCC 1 cut(s) 263
BshTI ACCGGT 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 68
BsiSI CCGG 4 cut(s) 134, 139, 254, 647
BslFI GGGAC 3 cut(s) 230, 444, 467
BslI CCNNNNNNNGG 6 cut(s) 42, 253, 254, 260, 502, 661
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 3 cut(s) 230, 444, 467
BsmI GAATGC 1 cut(s) 541
BsnI GGCC 1 cut(s) 113
Bso31I GGTCTC 1 cut(s) 50
Bsp119I TTCGAA 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 4 cut(s) 347, 370, 649, 696
Bsp19I CCATGG 1 cut(s) 395
BspACI CCGC 8 cut(s) 83, 155, 236, 644, 701, 723, 818, 870
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 5 cut(s) 44, 514, 612, 688, 856
BspFNI CGCG 1 cut(s) 818
BspHI TCATGA 2 cut(s) 373, 823
BspLI GGNNCC 2 cut(s) 265, 698
BspMI ACCTGC 1 cut(s) 373
BspPI GGATC 3 cut(s) 657, 691, 704
BspQI GCTCTTC 1 cut(s) 559
BspT104I TTCGAA 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 733
BsrFI RCCGGY 1 cut(s) 138
BsrI ACTGG 2 cut(s) 461, 709
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 3 cut(s) 108, 167, 395
BssMI GATC 4 cut(s) 347, 370, 649, 696
BssT1I CCWWGG 2 cut(s) 108, 395
Bst2UI CCWGG 2 cut(s) 168, 694
Bst4CI ACNGT 2 cut(s) 178, 592
Bst6I CTCTTC 1 cut(s) 559
BstBI TTCGAA 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 571
BstDEI CTNAG 5 cut(s) 31, 501, 599, 675, 843
BstDSI CCRYGG 1 cut(s) 395
BstEII GGTNACC 1 cut(s) 484
BstF5I GGATG 2 cut(s) 20, 190
BstFNI CGCG 1 cut(s) 818
BstHHI GCGC 1 cut(s) 818
BstKTI GATC 4 cut(s) 350, 373, 652, 699
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 4 cut(s) 347, 370, 649, 696
BstMWI GCNNNNNNNGC 3 cut(s) 515, 640, 740
BstNI CCWGG 2 cut(s) 168, 694
BstNSI RCATGY 1 cut(s) 769
BstPI GGTNACC 1 cut(s) 484
BstSCI CCNGG 3 cut(s) 166, 253, 692
BstUI CGCG 1 cut(s) 818
BstV1I GCAGC 3 cut(s) 550, 652, 691
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 2 cut(s) 347, 696
BstYI RGATCY 2 cut(s) 347, 696
BsuI GTATCC 1 cut(s) 121
BsuRI GGCC 1 cut(s) 113
BtgI CCRYGG 1 cut(s) 395
BtgZI GCGATG 1 cut(s) 173
BtsCI GGATG 2 cut(s) 20, 190
BtsIMutI CAGTG 2 cut(s) 607, 716
BveI ACCTGC 1 cut(s) 373
Cac8I GCNNGC 1 cut(s) 571
CciI TCATGA 2 cut(s) 373, 823
CfoI GCGC 1 cut(s) 818
Cfr10I RCCGGY 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 136
CpoI CGGWCCG 1 cut(s) 136
Csp6I GTAC 4 cut(s) 199, 264, 442, 526
CspAI ACCGGT 1 cut(s) 138
CspI CGGWCCG 1 cut(s) 136
CviQI GTAC 4 cut(s) 199, 264, 442, 526
DdeI CTNAG 5 cut(s) 31, 501, 599, 675, 843
DpnI GATC 4 cut(s) 349, 372, 651, 698
DpnII GATC 4 cut(s) 347, 370, 649, 696
DraIII CACNNNGTG 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 559
EarI CTCTTC 1 cut(s) 559
Ecl136II GAGCTC 1 cut(s) 66
Eco130I CCWWGG 2 cut(s) 108, 395
Eco24I GRGCYC 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 50
Eco47I GGWCC 1 cut(s) 136
Eco53kI GAGCTC 1 cut(s) 66
Eco91I GGTNACC 1 cut(s) 484
EcoICRI GAGCTC 1 cut(s) 66
EcoO65I GGTNACC 1 cut(s) 484
EcoRI GAATTC 1 cut(s) 685
EcoRII CCWGG 2 cut(s) 166, 692
EcoT14I CCWWGG 2 cut(s) 108, 395
EcoT38I GRGCYC 1 cut(s) 68
ErhI CCWWGG 2 cut(s) 108, 395
FaqI GGGAC 3 cut(s) 230, 444, 467
FauI CCCGC 2 cut(s) 229, 708
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 6 cut(s) 156, 539, 644, 666, 680, 724
FokI GGATG 2 cut(s) 7, 197
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 6 cut(s) 156, 539, 644, 666, 680, 724
FspBI CTAG 3 cut(s) 242, 360, 510
GlaI GCGC 1 cut(s) 817
GluI GCNGC 6 cut(s) 156, 539, 644, 666, 680, 724
GsuI CTGGAG 3 cut(s) 63, 478, 606
HaeIII GGCC 1 cut(s) 113
HapII CCGG 4 cut(s) 134, 139, 254, 647
HhaI GCGC 1 cut(s) 818
Hin6I GCGC 1 cut(s) 816
HinP1I GCGC 1 cut(s) 816
HinfI GANTC 4 cut(s) 76, 312, 595, 827
HpaII CCGG 4 cut(s) 134, 139, 254, 647
HphI GGTGA 3 cut(s) 202, 301, 644
Hpy188I TCNGA 3 cut(s) 474, 846, 861
Hpy188III TCNNGA 3 cut(s) 374, 623, 824
HpyCH4III ACNGT 2 cut(s) 178, 592
HpyCH4V TGCA 4 cut(s) 118, 518, 839, 865
HpyF10VI GCNNNNNNNGC 3 cut(s) 515, 640, 740
HpyF3I CTNAG 5 cut(s) 31, 501, 599, 675, 843
HspAI GCGC 1 cut(s) 816
KpnI GGTACC 1 cut(s) 267
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 4 cut(s) 347, 370, 649, 696
LguI GCTCTTC 1 cut(s) 559
LmnI GCTCC 1 cut(s) 731
Lsp1109I GCAGC 3 cut(s) 550, 652, 691
LweI GCATC 2 cut(s) 724, 852
MaeI CTAG 3 cut(s) 242, 360, 510
MaeIII GTNAC 1 cut(s) 484
MalI GATC 4 cut(s) 349, 372, 651, 698
MboI GATC 4 cut(s) 347, 370, 649, 696
MboII GAAGA 3 cut(s) 184, 342, 576
MflI RGATCY 2 cut(s) 347, 696
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 4 cut(s) 6, 40, 475, 685
MlyI GAGTC 1 cut(s) 70
MmeI TCCRAC 1 cut(s) 189
MroXI GAANNNNTTC 1 cut(s) 767
MseI TTAA 2 cut(s) 425, 807
MslI CAYNNNNRTG 3 cut(s) 283, 303, 770
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 4 cut(s) 134, 139, 254, 647
MspR9I CCNGG 3 cut(s) 168, 255, 694
Mva1269I GAATGC 1 cut(s) 541
MvaI CCWGG 2 cut(s) 168, 694
MvnI CGCG 1 cut(s) 818
MwoI GCNNNNNNNGC 3 cut(s) 515, 640, 740
NciI CCSGG 1 cut(s) 255
NcoI CCATGG 1 cut(s) 395
NdeII GATC 4 cut(s) 347, 370, 649, 696
NlaIV GGNNCC 2 cut(s) 265, 698
NmeAIII GCCGAG 1 cut(s) 641
NspI RCATGY 1 cut(s) 769
NspV TTCGAA 1 cut(s) 99
PagI TCATGA 2 cut(s) 373, 823
PciI ACATGT 1 cut(s) 765
PciSI GCTCTTC 1 cut(s) 559
PctI GAATGC 1 cut(s) 541
PdmI GAANNNNTTC 1 cut(s) 767
PfeI GAWTC 3 cut(s) 312, 595, 827
PfoI TCCNGGA 1 cut(s) 253
PinAI ACCGGT 1 cut(s) 138
PkrI GCNGC 6 cut(s) 157, 540, 645, 667, 681, 725
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PscI ACATGT 1 cut(s) 765
Psp124BI GAGCTC 1 cut(s) 68
Psp6I CCWGG 2 cut(s) 166, 692
PspEI GGTNACC 1 cut(s) 484
PspGI CCWGG 2 cut(s) 166, 692
PspN4I GGNNCC 2 cut(s) 265, 698
PspPI GGNCC 1 cut(s) 136
PsuI RGATCY 2 cut(s) 347, 696
RsaI GTAC 4 cut(s) 200, 265, 443, 527
RsaNI GTAC 4 cut(s) 199, 264, 442, 526
RseI CAYNNNNRTG 3 cut(s) 283, 303, 770
Rsr2I CGGWCCG 1 cut(s) 136
RsrII CGGWCCG 1 cut(s) 136
SacI GAGCTC 1 cut(s) 68
SapI GCTCTTC 1 cut(s) 559
SaqAI TTAA 2 cut(s) 425, 807
SatI GCNGC 6 cut(s) 156, 539, 644, 666, 680, 724
Sau3AI GATC 4 cut(s) 347, 370, 649, 696
Sau96I GGNCC 1 cut(s) 136
ScaI AGTACT 1 cut(s) 527
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 3 cut(s) 168, 255, 694
SduI GDGCHC 1 cut(s) 68
SfaNI GCATC 2 cut(s) 724, 852
SfuI TTCGAA 1 cut(s) 99
SinI GGWCC 1 cut(s) 136
SmiMI CAYNNNNRTG 3 cut(s) 283, 303, 770
Sse9I AATT 4 cut(s) 6, 40, 475, 685
SsiI CCGC 8 cut(s) 83, 155, 236, 644, 701, 723, 818, 870
SspMI CTAG 3 cut(s) 242, 360, 510
SstI GAGCTC 1 cut(s) 68
StyD4I CCNGG 3 cut(s) 166, 253, 692
StyI CCWWGG 2 cut(s) 108, 395
TaaI ACNGT 2 cut(s) 178, 592
TaqI TCGA 3 cut(s) 68, 99, 231
TasI AATT 4 cut(s) 6, 40, 475, 685
TatI WGTACW 2 cut(s) 198, 525
TauI GCSGC 3 cut(s) 158, 646, 726
TfiI GAWTC 3 cut(s) 312, 595, 827
Tru1I TTAA 2 cut(s) 425, 807
Tru9I TTAA 2 cut(s) 425, 807
TscAI CASTG 2 cut(s) 607, 716
TseI GCWGC 3 cut(s) 538, 665, 679
TspDTI ATGAA 6 cut(s) 342, 390, 760, 812, 816, 840
TspRI CASTG 2 cut(s) 607, 716
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 3 cut(s) 6, 475, 685
XceI RCATGY 1 cut(s) 769
XmnI GAANNNNTTC 1 cut(s) 767
XspI CTAG 3 cut(s) 242, 360, 510
ZrmI AGTACT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.