MD03G1076200.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0013839
Physical Location & Seq
Reverse (-)
6184277 .. 6186523
2247 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1076200.v1.1.491

Sequence Viewer

Length: 927 bp
ATGAAGTTTGAGATGGAGATTCTGTCCCCTTCGTCCTATTTTTCGACTTCGAATAGGCTTGTCGAAGAGAGCAAGGGCGCGAGATGGACTCCGGCGGAAAACAAAATGTTCGAAAACGCCCTGGCGTTGTACGACAAGGACGCGCCGGACCGATGGCACAAGGTGGCGGAGATGATACCGGGGAAGACGGTGAGGGACGTGATGAAGCAGTACGAGGAATTGGAACTTGATGTTGGCAAGATAGAAGCAGGGCTTATTCCGATTCCGGGATACAGCCCCTCTCCATTCACATTGGAGTGGGTGAACAGACACGGTGGCTATGATGGGTTCAAACAGCAGTCTTATGGGATTGGCGGCAAGAGATCTTCGTCGAATCGCCCTTCGGATCACGAAAGAAAGAAAGGGGTTCCGTGGACCGAAGAAGAACACAAGCTGTTCCTAATGGGACTGAAGAAGTATGGCAAGGGGGACTGGAGGAACATCTCGAGGAATTTTGTGGTGACACGAACACCGACTCAGGTCGCTAGTCATGCACAGAAGTACTTCATCAGGCAGCTTTCCGGGGGGAAGGATAAGCGAAGAGCCAGCATCCATGACATAACAACTGTCAATCTCAACGACATGAGAACTCCGTCTCCAGACAACAAAAGTCCTCTCTCTCCAGAGCTGCCTCAGCATCCGAATTCTGCTGCCACCGCTAGGGCTCCATTTCAGTGGCATCAGCCGCAAGGCGGTGGAGTAAACTTGGGTTTTAATCAAGGGCATGGAAATATGTTCATGTCCTCCCATCCTTATGGGATTAGTTCATACGGACAAAAAATGCAGGGGCAGGATCTGCAGCACAAAGGTGCTGCTAATAACTTGTACTATGGACCGCAAAATTTGGGTTTTCAGATGCAATCCTCGCAGCACTACCCGCACGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

309

Amino Acids

34.77

Weight (kDa)

9.4

Isoelectric Point (pI)

61.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 28 - 71 1.2e-06 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 136 - 182 4.1e-13 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013839)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58900
fragaria_vesca FvH4_3g38150
malus_domestica MD03G1076200.v1.1 MD11G1080800.v1.1
prunus_persica Prupe.6G061100_v2.0.a1
pyrus_communis pycom03g06050 pycom11g06890
rosa_chinensis RchiOBHm_Chr5g0068581
rosa_laevigata RLG00000035982
rosa_multiflora Rmu_sc0004721.1_g000002
rosa_roxburghii Rroxscaffold_1G00012280
rosa_rugosa Rorug05G0391600
rosa_samantha Rh5AG449300 Rh5BG467500 Rh5CG489300 Rh5DG480900
rosa_wichuraiana Rw5G041950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 80, 143
AciI CCGC 8 cut(s) 95, 167, 354, 696, 725, 732, 875, 917
AclWI GGATC 2 cut(s) 393, 840
AcsI RAATTY 3 cut(s) 490, 682, 880
AcuI CTGAAG 1 cut(s) 470
AdeI CACNNNGTG 1 cut(s) 163
AfaI GTAC 4 cut(s) 131, 212, 542, 866
AfiI CCNNNNNNNGG 3 cut(s) 266, 699, 731
AgsI TTSAA 1 cut(s) 331
AjiI CACGTC 1 cut(s) 199
AjnI CCWGG 1 cut(s) 120
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
AleI CACNNNNGTG 1 cut(s) 846
AloI GAACNNNNNNTCC 2 cut(s) 619, 651
AluBI AGCT 3 cut(s) 433, 556, 667
AluI AGCT 3 cut(s) 433, 556, 667
Alw26I GTCTC 1 cut(s) 639
AlwI GGATC 2 cut(s) 393, 840
AlwNI CAGNNNCTG 1 cut(s) 835
Ama87I CYCGRG 1 cut(s) 484
ApeKI GCWGC 6 cut(s) 553, 667, 689, 838, 851, 907
ApoI RAATTY 3 cut(s) 490, 682, 880
Asp700I GAANNNNTTC 1 cut(s) 542
AspLEI GCGC 2 cut(s) 80, 145
AspS9I GGNCC 3 cut(s) 148, 414, 872
AsuC2I CCSGG 3 cut(s) 180, 267, 562
AsuHPI GGTGA 3 cut(s) 202, 313, 511
AsuII TTCGAA 2 cut(s) 50, 111
AvaI CYCGRG 1 cut(s) 484
AvaII GGWCC 3 cut(s) 148, 414, 872
BanII GRGCYC 1 cut(s) 706
BbsI GAAGAC 1 cut(s) 191
BbvCI CCTCAGC 1 cut(s) 672
BbvI GCAGC 6 cut(s) 565, 654, 676, 838, 850, 919
BccI CCATC 5 cut(s) 7, 78, 147, 317, 795
BciT130I CCWGG 1 cut(s) 122
BciVI GTATCC 1 cut(s) 263
BcnI CCSGG 3 cut(s) 180, 267, 562
BcoDI GTCTC 1 cut(s) 639
BfaI CTAG 2 cut(s) 525, 699
BfmI CTRYAG 1 cut(s) 836
BfuI GTATCC 1 cut(s) 263
BglII AGATCT 1 cut(s) 362
BisI GCNGC 8 cut(s) 355, 554, 668, 690, 725, 839, 852, 908
BlsI GCNGC 8 cut(s) 356, 555, 669, 691, 726, 840, 853, 909
BmcAI AGTACT 1 cut(s) 542
Bme1390I CCNGG 4 cut(s) 122, 180, 267, 562
Bme18I GGWCC 3 cut(s) 148, 414, 872
BmeT110I CYCGRG 1 cut(s) 484
BmgBI CACGTC 1 cut(s) 199
BmgT120I GGNCC 3 cut(s) 148, 414, 872
BmiI GGNNCC 2 cut(s) 408, 705
BmrFI CCNGG 4 cut(s) 122, 180, 267, 562
BmsI GCATC 4 cut(s) 597, 685, 727, 885
BoxI GACNNNNGTC 1 cut(s) 518
BpiI GAAGAC 1 cut(s) 191
BplI GAGNNNNNCTC 2 cut(s) 73, 105
BpmI CTGGAG 3 cut(s) 493, 621, 645
Bpu10I CCTNAGC 1 cut(s) 672
Bpu14I TTCGAA 2 cut(s) 50, 111
BpuMI CCSGG 3 cut(s) 180, 267, 562
BsaJI CCNNGG 4 cut(s) 120, 179, 410, 561
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 619, 649
Bsc4I CCNNNNNNNGG 3 cut(s) 266, 699, 731
Bse1I ACTGG 1 cut(s) 476
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 4 cut(s) 120, 179, 410, 561
BseGI GGATG 3 cut(s) 588, 676, 787
BseLI CCNNNNNNNGG 3 cut(s) 266, 699, 731
BseMII CTCAG 2 cut(s) 530, 686
BseNI ACTGG 1 cut(s) 476
BseXI GCAGC 6 cut(s) 565, 654, 676, 838, 850, 919
Bsh1236I CGCG 2 cut(s) 80, 143
BsiHKCI CYCGRG 1 cut(s) 484
BsiSI CCGG 5 cut(s) 92, 146, 179, 266, 561
BslFI GGGAC 4 cut(s) 10, 209, 459, 482
BslI CCNNNNNNNGG 3 cut(s) 266, 699, 731
BsmAI GTCTC 1 cut(s) 639
BsmBI CGTCTC 1 cut(s) 639
BsmFI GGGAC 4 cut(s) 10, 209, 459, 482
BsoBI CYCGRG 1 cut(s) 484
Bsp119I TTCGAA 2 cut(s) 50, 111
Bsp1286I GDGCHC 1 cut(s) 706
Bsp143I GATC 3 cut(s) 362, 385, 832
BspACI CCGC 8 cut(s) 95, 167, 354, 696, 725, 732, 875, 917
BspCNI CTCAG 2 cut(s) 529, 685
BspFNI CGCG 2 cut(s) 80, 143
BspLI GGNNCC 2 cut(s) 408, 705
BspMAI CTGCAG 1 cut(s) 840
BspPI GGATC 2 cut(s) 393, 840
BspQI GCTCTTC 1 cut(s) 574
BspT104I TTCGAA 2 cut(s) 50, 111
BsrI ACTGG 1 cut(s) 476
BssECI CCNNGG 4 cut(s) 120, 179, 410, 561
BssMI GATC 3 cut(s) 362, 385, 832
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 3 cut(s) 190, 314, 607
Bst6I CTCTTC 2 cut(s) 60, 574
BstAPI GCANNNNNTGC 1 cut(s) 835
BstBI TTCGAA 2 cut(s) 50, 111
BstC8I GCNNGC 1 cut(s) 586
BstDEI CTNAG 2 cut(s) 516, 672
BstDSI CCRYGG 1 cut(s) 410
BstF5I GGATG 3 cut(s) 588, 676, 787
BstFNI CGCG 2 cut(s) 80, 143
BstHHI GCGC 2 cut(s) 80, 145
BstKTI GATC 3 cut(s) 365, 388, 835
BstMAI GTCTC 1 cut(s) 639
BstMBI GATC 3 cut(s) 362, 385, 832
BstMWI GCNNNNNNNGC 7 cut(s) 530, 673, 695, 724, 835, 904, 916
BstNI CCWGG 1 cut(s) 122
BstPAI GACNNNNGTC 1 cut(s) 518
BstSCI CCNGG 4 cut(s) 120, 178, 265, 560
BstSFI CTRYAG 1 cut(s) 836
BstUI CGCG 2 cut(s) 80, 143
BstV1I GCAGC 6 cut(s) 565, 654, 676, 838, 850, 919
BstV2I GAAGAC 1 cut(s) 191
BstX2I RGATCY 2 cut(s) 362, 832
BstXI CCANNNNNNTGG 2 cut(s) 714, 794
BstYI RGATCY 2 cut(s) 362, 832
BsuI GTATCC 1 cut(s) 263
BtgI CCRYGG 1 cut(s) 410
BtrI CACGTC 1 cut(s) 199
BtsCI GGATG 3 cut(s) 588, 676, 787
BtsIMutI CAGTG 1 cut(s) 719
Cac8I GCNNGC 1 cut(s) 586
CaiI CAGNNNCTG 1 cut(s) 835
CfoI GCGC 2 cut(s) 80, 145
Cfr13I GGNCC 3 cut(s) 148, 414, 872
CpoI CGGWCCG 1 cut(s) 148
CseI GACGC 1 cut(s) 149
Csp6I GTAC 4 cut(s) 130, 211, 541, 865
CspI CGGWCCG 1 cut(s) 148
CviAII CATG 5 cut(s) 530, 593, 622, 764, 778
CviQI GTAC 4 cut(s) 130, 211, 541, 865
DdeI CTNAG 2 cut(s) 516, 672
DpnI GATC 3 cut(s) 364, 387, 834
DpnII GATC 3 cut(s) 362, 385, 832
DraIII CACNNNGTG 1 cut(s) 163
Eam1104I CTCTTC 2 cut(s) 60, 574
EarI CTCTTC 2 cut(s) 60, 574
EciI GGCGGA 2 cut(s) 110, 182
Eco24I GRGCYC 1 cut(s) 706
Eco47I GGWCC 3 cut(s) 148, 414, 872
Eco57I CTGAAG 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 484
EcoRI GAATTC 1 cut(s) 682
EcoRII CCWGG 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 706
Esp3I CGTCTC 1 cut(s) 639
FaeI CATG 5 cut(s) 533, 596, 625, 767, 781
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FaqI GGGAC 4 cut(s) 10, 209, 459, 482
FatI CATG 5 cut(s) 529, 592, 621, 763, 777
FauI CCCGC 1 cut(s) 924
Fnu4HI GCNGC 8 cut(s) 355, 554, 668, 690, 725, 839, 852, 908
FokI GGATG 3 cut(s) 575, 663, 774
FriOI GRGCYC 1 cut(s) 706
Fsp4HI GCNGC 8 cut(s) 355, 554, 668, 690, 725, 839, 852, 908
FspBI CTAG 2 cut(s) 525, 699
GlaI GCGC 2 cut(s) 79, 144
GluI GCNGC 8 cut(s) 355, 554, 668, 690, 725, 839, 852, 908
GsuI CTGGAG 3 cut(s) 493, 621, 645
HapII CCGG 5 cut(s) 92, 146, 179, 266, 561
HgaI GACGC 1 cut(s) 149
HhaI GCGC 2 cut(s) 80, 145
Hin1II CATG 5 cut(s) 533, 596, 625, 767, 781
Hin6I GCGC 2 cut(s) 78, 143
HinP1I GCGC 2 cut(s) 78, 143
HinfI GANTC 5 cut(s) 19, 88, 262, 373, 514
HpaII CCGG 5 cut(s) 92, 146, 179, 266, 561
HphI GGTGA 3 cut(s) 202, 313, 511
Hpy166II GTNNAC 3 cut(s) 304, 414, 742
Hpy188I TCNGA 4 cut(s) 261, 385, 681, 894
Hpy188III TCNNGA 4 cut(s) 389, 484, 638, 662
Hpy8I GTNNAC 3 cut(s) 304, 414, 742
Hpy99I CGWCG 1 cut(s) 373
HpyAV CCTTC 3 cut(s) 39, 390, 562
HpyCH4III ACNGT 3 cut(s) 190, 314, 607
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 4 cut(s) 533, 823, 838, 898
HpyF10VI GCNNNNNNNGC 7 cut(s) 530, 673, 695, 724, 835, 904, 916
HpyF3I CTNAG 2 cut(s) 516, 672
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 5 cut(s) 533, 596, 625, 767, 781
HspAI GCGC 2 cut(s) 78, 143
Kzo9I GATC 3 cut(s) 362, 385, 832
LguI GCTCTTC 1 cut(s) 574
LmnI GCTCC 1 cut(s) 709
Lsp1109I GCAGC 6 cut(s) 565, 654, 676, 838, 850, 919
LweI GCATC 4 cut(s) 597, 685, 727, 885
MaeI CTAG 2 cut(s) 525, 699
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 499
MalI GATC 3 cut(s) 364, 387, 834
MboI GATC 3 cut(s) 362, 385, 832
MboII GAAGA 7 cut(s) 77, 196, 357, 431, 434, 463, 591
MflI RGATCY 2 cut(s) 362, 832
MhlI GDGCHC 1 cut(s) 706
MluCI AATT 4 cut(s) 218, 490, 682, 880
MlyI GAGTC 2 cut(s) 82, 508
MnlI CCTC 9 cut(s) 186, 208, 289, 468, 480, 663, 681, 793, 913
MroXI GAANNNNTTC 1 cut(s) 542
MseI TTAA 1 cut(s) 753
MslI CAYNNNNRTG 4 cut(s) 295, 712, 792, 846
MspI CCGG 5 cut(s) 92, 146, 179, 266, 561
MspR9I CCNGG 4 cut(s) 122, 180, 267, 562
MvaI CCWGG 1 cut(s) 122
MvnI CGCG 2 cut(s) 80, 143
MwoI GCNNNNNNNGC 7 cut(s) 530, 673, 695, 724, 835, 904, 916
NciI CCSGG 3 cut(s) 180, 267, 562
NdeII GATC 3 cut(s) 362, 385, 832
NlaIII CATG 5 cut(s) 533, 596, 625, 767, 781
NlaIV GGNNCC 2 cut(s) 408, 705
NmuCI GTSAC 1 cut(s) 499
NspV TTCGAA 2 cut(s) 50, 111
OliI CACNNNNGTG 1 cut(s) 846
PaeR7I CTCGAG 1 cut(s) 484
PciSI GCTCTTC 1 cut(s) 574
PdmI GAANNNNTTC 1 cut(s) 542
PfeI GAWTC 3 cut(s) 19, 262, 373
PfoI TCCNGGA 1 cut(s) 265
PkrI GCNGC 8 cut(s) 356, 555, 669, 691, 726, 840, 853, 909
PleI GAGTC 2 cut(s) 82, 508
PpsI GAGTC 2 cut(s) 82, 508
PshAI GACNNNNGTC 1 cut(s) 518
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 2 cut(s) 408, 705
PspPI GGNCC 3 cut(s) 148, 414, 872
PstI CTGCAG 1 cut(s) 840
PstNI CAGNNNCTG 1 cut(s) 835
PsuI RGATCY 2 cut(s) 362, 832
RsaI GTAC 4 cut(s) 131, 212, 542, 866
RsaNI GTAC 4 cut(s) 130, 211, 541, 865
RseI CAYNNNNRTG 4 cut(s) 295, 712, 792, 846
Rsr2I CGGWCCG 1 cut(s) 148
RsrII CGGWCCG 1 cut(s) 148
SapI GCTCTTC 1 cut(s) 574
SaqAI TTAA 1 cut(s) 753
SatI GCNGC 8 cut(s) 355, 554, 668, 690, 725, 839, 852, 908
Sau3AI GATC 3 cut(s) 362, 385, 832
Sau96I GGNCC 3 cut(s) 148, 414, 872
ScaI AGTACT 1 cut(s) 542
SchI GAGTC 2 cut(s) 82, 508
ScrFI CCNGG 4 cut(s) 122, 180, 267, 562
SduI GDGCHC 1 cut(s) 706
SetI ASST 7 cut(s) 165, 201, 435, 522, 558, 669, 850
SfaNI GCATC 4 cut(s) 597, 685, 727, 885
SfcI CTRYAG 1 cut(s) 836
Sfr274I CTCGAG 1 cut(s) 484
SfuI TTCGAA 2 cut(s) 50, 111
SinI GGWCC 3 cut(s) 148, 414, 872
SlaI CTCGAG 1 cut(s) 484
SmiMI CAYNNNNRTG 4 cut(s) 295, 712, 792, 846
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
Sse9I AATT 4 cut(s) 218, 490, 682, 880
SsiI CCGC 8 cut(s) 95, 167, 354, 696, 725, 732, 875, 917
SspMI CTAG 2 cut(s) 525, 699
StyD4I CCNGG 4 cut(s) 120, 178, 265, 560
TaaI ACNGT 3 cut(s) 190, 314, 607
TaiI ACGT 1 cut(s) 201
TaqI TCGA 6 cut(s) 44, 50, 63, 111, 371, 485
TaqII GACCGA 2 cut(s) 165, 431
TasI AATT 4 cut(s) 218, 490, 682, 880
TatI WGTACW 2 cut(s) 540, 864
TauI GCSGC 2 cut(s) 357, 727
TfiI GAWTC 3 cut(s) 19, 262, 373
Tru1I TTAA 1 cut(s) 753
Tru9I TTAA 1 cut(s) 753
TscAI CASTG 1 cut(s) 719
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 6 cut(s) 553, 667, 689, 838, 851, 907
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 5 cut(s) 17, 218, 535, 766, 795
TspGWI ACGGA 3 cut(s) 399, 621, 825
TspRI CASTG 1 cut(s) 719
VpaK11BI GGWCC 3 cut(s) 148, 414, 872
XapI RAATTY 3 cut(s) 490, 682, 880
XhoI CTCGAG 1 cut(s) 484
XmnI GAANNNNTTC 1 cut(s) 542
XspI CTAG 2 cut(s) 525, 699
ZrmI AGTACT 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.