AT5G59350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005621
Physical Location & Seq
Forward (+)
23940745 .. 23943625
2881 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G59350.3

Sequence Viewer

Length: 864 bp
ATGAAGACTATTAGTGGATTAGGTATTGGGTTAAGTTTAATGTTTGGGTTTCTTCTATTAGCACTTGTTGGAGAAGTCTACTATCTTCTAAGATGTAAGAAGCACAAGAAGAGAGTCATAAGCCAAGAGAGTGAAGAAGAGAAAGAAGAAGAACAACAACAAAACGGATACGCTAAAGAACTAATCCAGCTCTTCTGCTTCAAAAAACCTCAATCTCTGCAGCAAAACAATGGAGGAAGAGAAGGTGAAGTCTCAATGAATGAAGATGGGAATCCAGATTTAGAACTTGGGTTGATGAAACACTTGAATGGAGGAGATCTAGGGTTTGAAGCAGAGCTTATGAAGCTTCATAACCAGAGGTTTCTATTCACAATCATGGAAGAGACAAAAGCAGATTTGGAATCTGAAGATGGGGGTAAATCAAGATTAGGTTCAAGATCAAGAAGAAGAAGCTTGAGTGATGTTCCTAATGACTGTAATACCCCTGGATTCACTCCATTGGCTTCTCCTAAAAAGTCATCATCTCCTCTGGAGTCTTATCCACACCATGGATTCAATCCTCTGTTTGAGTCAGACGGTGAGCTTGAGTTTAACAAGTTTTTCAGGTCCTCTTCTTCACCTCCACCGAAGTTTAAGTTCATGAGAGATGCTGAAGAGAAGCTAAGGAAGAGATTGATTGAAGAAGCCAAAAGAAGAGAACTCTCGATTGTAACAGAAGGTTCGTTTCTCAAGTTTATGAATCCTGCGATGAACAGAGAGAAGAAACAGAGTATTCAAGAATGTGATGAAACGGTGTCGTTTTCTCCTTCTTCTTCCTCATCAGGTACAACAATTACAAATCTTAGAACGTTAGTGGTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

32.45

Weight (kDa)

6.57

Isoelectric Point (pI)

67.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 548
AccI GTMKAC 1 cut(s) 78
AclI AACGTT 1 cut(s) 848
AcuI CTGAAG 2 cut(s) 426, 672
AfaI GTAC 1 cut(s) 826
AfiI CCNNNNNNNGG 1 cut(s) 548
AgsI TTSAA 7 cut(s) 202, 307, 329, 435, 556, 680, 776
AjnI CCWGG 1 cut(s) 484
AluBI AGCT 6 cut(s) 190, 337, 346, 453, 583, 661
AluI AGCT 6 cut(s) 190, 337, 346, 453, 583, 661
Alw26I GTCTC 2 cut(s) 256, 377
ApeKI GCWGC 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 606
AsuHPI GGTGA 3 cut(s) 257, 590, 609
AvaII GGWCC 1 cut(s) 606
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 232
BccI CCATC 2 cut(s) 260, 404
BciT130I CCWGG 1 cut(s) 486
BciVI GTATCC 1 cut(s) 161
BcoDI GTCTC 2 cut(s) 256, 377
BfaI CTAG 1 cut(s) 320
BfmI CTRYAG 1 cut(s) 218
BfuI GTATCC 1 cut(s) 161
BglII AGATCT 1 cut(s) 316
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 486
Bme18I GGWCC 1 cut(s) 606
BmgT120I GGNCC 1 cut(s) 606
BmrFI CCNGG 1 cut(s) 486
BmsI GCATC 1 cut(s) 637
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 551
Bpu10I CCTNAGC 1 cut(s) 662
BpuEI CTTGAG 3 cut(s) 475, 605, 713
BsaBI GATNNNNATC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 484, 547
Bsc4I CCNNNNNNNGG 1 cut(s) 548
Bse8I GATNNNNATC 1 cut(s) 270
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 2 cut(s) 484, 547
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 548
BseRI GAGGAG 2 cut(s) 327, 516
BseXI GCAGC 1 cut(s) 232
BslI CCNNNNNNNGG 1 cut(s) 548
BsmAI GTCTC 2 cut(s) 256, 377
Bsp143I GATC 2 cut(s) 316, 437
Bsp19I CCATGG 1 cut(s) 547
BspHI TCATGA 1 cut(s) 639
BspMAI CTGCAG 1 cut(s) 222
BspQI GCTCTTC 1 cut(s) 197
BssECI CCNNGG 2 cut(s) 484, 547
BssMI GATC 2 cut(s) 316, 437
BssT1I CCWWGG 1 cut(s) 547
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 3 cut(s) 476, 578, 793
Bst6I CTCTTC 9 cut(s) 104, 132, 197, 232, 375, 616, 648, 662, 688
BstDEI CTNAG 3 cut(s) 89, 662, 842
BstDSI CCRYGG 1 cut(s) 547
BstKTI GATC 2 cut(s) 319, 440
BstMAI GTCTC 2 cut(s) 256, 377
BstMBI GATC 2 cut(s) 316, 437
BstMWI GCNNNNNNNGC 1 cut(s) 343
BstNI CCWGG 1 cut(s) 486
BstSCI CCNGG 1 cut(s) 484
BstSFI CTRYAG 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 232
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BsuI GTATCC 1 cut(s) 161
BtgI CCRYGG 1 cut(s) 547
BtgZI GCGATG 1 cut(s) 761
CciI TCATGA 1 cut(s) 639
Cfr13I GGNCC 1 cut(s) 606
Csp6I GTAC 1 cut(s) 825
CviAII CATG 3 cut(s) 376, 548, 640
CviJI RGCY 9 cut(s) 123, 190, 337, 346, 453, 503, 583, 661, 686
CviKI_1 RGCY 9 cut(s) 123, 190, 337, 346, 453, 503, 583, 661, 686
CviQI GTAC 1 cut(s) 825
DdeI CTNAG 3 cut(s) 89, 662, 842
DpnI GATC 2 cut(s) 318, 439
DpnII GATC 2 cut(s) 316, 437
Eam1104I CTCTTC 9 cut(s) 104, 132, 197, 232, 375, 616, 648, 662, 688
EarI CTCTTC 9 cut(s) 104, 132, 197, 232, 375, 616, 648, 662, 688
Eco130I CCWWGG 1 cut(s) 547
Eco47I GGWCC 1 cut(s) 606
Eco57I CTGAAG 2 cut(s) 426, 672
EcoO109I RGGNCCY 1 cut(s) 606
EcoRII CCWGG 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 547
FaeI CATG 3 cut(s) 379, 551, 643
FaiI YATR 7 cut(s) 119, 341, 351, 377, 549, 641, 737
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FatI CATG 3 cut(s) 375, 547, 639
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 221
FspBI CTAG 1 cut(s) 320
GluI GCNGC 1 cut(s) 221
GsuI CTGGAG 1 cut(s) 551
Hin1II CATG 3 cut(s) 379, 551, 643
HindIII AAGCTT 2 cut(s) 344, 451
HinfI GANTC 8 cut(s) 114, 271, 401, 489, 533, 552, 569, 739
HphI GGTGA 3 cut(s) 257, 590, 609
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 406, 574
Hpy188III TCNNGA 8 cut(s) 275, 423, 435, 441, 530, 640, 703, 776
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 3 cut(s) 236, 710, 816
HpyCH4III ACNGT 3 cut(s) 476, 578, 793
HpyCH4IV ACGT 1 cut(s) 848
HpyCH4V TGCA 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 343
HpyF3I CTNAG 3 cut(s) 89, 662, 842
HpySE526I ACGT 1 cut(s) 848
Hsp92II CATG 3 cut(s) 379, 551, 643
Kzo9I GATC 2 cut(s) 316, 437
LguI GCTCTTC 1 cut(s) 197
LpnPI CCDG 9 cut(s) 200, 288, 368, 471, 498, 515, 589, 756, 807
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 1 cut(s) 637
MaeI CTAG 1 cut(s) 320
MaeII ACGT 1 cut(s) 848
MaeIII GTNAC 1 cut(s) 709
MalI GATC 2 cut(s) 318, 439
MboI GATC 2 cut(s) 316, 437
MflI RGATCY 1 cut(s) 316
MluCI AATT 1 cut(s) 831
MlyI GAGTC 3 cut(s) 123, 542, 578
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 9 cut(s) 219, 227, 305, 351, 537, 570, 619, 630, 826
MseI TTAA 4 cut(s) 32, 38, 591, 633
MslI CAYNNNNRTG 2 cut(s) 306, 374
MspR9I CCNGG 1 cut(s) 486
MvaI CCWGG 1 cut(s) 486
MwoI GCNNNNNNNGC 1 cut(s) 343
NcoI CCATGG 1 cut(s) 547
NdeII GATC 2 cut(s) 316, 437
NlaIII CATG 3 cut(s) 379, 551, 643
PagI TCATGA 1 cut(s) 639
PciSI GCTCTTC 1 cut(s) 197
PfeI GAWTC 5 cut(s) 271, 401, 489, 552, 739
PflMI CCANNNNNTGG 1 cut(s) 548
PkrI GCNGC 1 cut(s) 222
PleI GAGTC 3 cut(s) 122, 541, 577
PpsI GAGTC 3 cut(s) 122, 541, 577
PpuMI RGGWCCY 1 cut(s) 606
Psp1406I AACGTT 1 cut(s) 848
Psp5II RGGWCCY 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 484
PspGI CCWGG 1 cut(s) 484
PspPI GGNCC 1 cut(s) 606
PspPPI RGGWCCY 1 cut(s) 606
PstI CTGCAG 1 cut(s) 222
PsuI RGATCY 1 cut(s) 316
RsaI GTAC 1 cut(s) 826
RsaNI GTAC 1 cut(s) 825
RseI CAYNNNNRTG 2 cut(s) 306, 374
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 4 cut(s) 32, 38, 591, 633
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 2 cut(s) 316, 437
Sau96I GGNCC 1 cut(s) 606
SchI GAGTC 3 cut(s) 123, 542, 578
ScrFI CCNGG 1 cut(s) 486
SfaNI GCATC 1 cut(s) 637
SfcI CTRYAG 1 cut(s) 218
SinI GGWCC 1 cut(s) 606
SmiMI CAYNNNNRTG 2 cut(s) 306, 374
SmlI CTYRAG 3 cut(s) 454, 584, 728
SmoI CTYRAG 3 cut(s) 454, 584, 728
Sse9I AATT 1 cut(s) 831
SspMI CTAG 1 cut(s) 320
StyD4I CCNGG 1 cut(s) 484
StyI CCWWGG 1 cut(s) 547
TaaI ACNGT 3 cut(s) 476, 578, 793
TaiI ACGT 1 cut(s) 851
TaqI TCGA 1 cut(s) 704
TasI AATT 1 cut(s) 831
TfiI GAWTC 5 cut(s) 271, 401, 489, 552, 739
Tru1I TTAA 4 cut(s) 32, 38, 591, 633
Tru9I TTAA 4 cut(s) 32, 38, 591, 633
TseI GCWGC 1 cut(s) 220
TspGWI ACGGA 1 cut(s) 180
Van91I CCANNNNNTGG 1 cut(s) 548
VpaK11BI GGWCC 1 cut(s) 606
XmiI GTMKAC 1 cut(s) 78
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.