Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005621

Physical Location & Seq

Genomic Coordinates Forward (+)

71550273 .. 71554192

Gene Structure 3920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG448600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGACATCTTTGAGTGGATTAGGGATTGGCTTGAGCTTGGTATTTGGGTGCCTCCTCTTGGCTCTTGTGGCAGAGCTTTACTACTTGCTATGGTGGAAGAAAAGAATCACAAACAGAGAGATTGAAGATGAGAATTACAGCAACCAGCCAAAGGTACCCTTTCAATTTAGTTGCTTTAAGAAACCCAATTGTCTGCAAACTACAAACAACAACACCACTTCTGAGGATAATGTGAGAAACCCAGATACCAATTCTAGTGACCCAGATTTGGAACTGGGTTCCAGCAAAGATTCGTTGTTGAAGGCCAATTATGGTGAAGACACCGTGGAATCAGAGCTCATGAGACTGCACAATCTGGCTGGCCCGCCAAGGTTTCTCTTCCCCATAAAAGAGGAAGAAAAGGAGGATTTGGAATCTGAAGATGCAAAATCTAGAAGAGGGTCCAGAACAAGGAGTTTGAGTGATCTGATTTTGGCAGTGGATAACCCATTTCTCACTACTCCTTTGCCTTCTCCACCATTAAAGTCTTCACCTTTGAACCCTCTGGACTCTTACAAGCACCATGGATTCAACCCTCTCTTTGAATCCTCAACAGAGGCTGAGATGAACAGGCTGAGATCTTCACCACCTCCAAAGTTCAAGTTTTTAAGGGATGCAGAGGAGAAGTTGCTGAAGAGATTGATGGAAGAAGCAGAGAAAAGGGCATCTAGAAATTCGGGGCCTGCTCAAAATCAAGACTTTGGGGTAAAAGCTCCATCTATTTCGACAATGGGGACAGAAGAAAAAGATGGGTCTTTTATAAGACTCATTGTTGGTAAGAACAAGGAGAGTCAGAGAGAGCTTCATAGTGGTAATCTGCCACAGTTTCCTTCAAGCTCTTCCAAGGTACTCCCACTGGCTTCATCTCCTCTAGGCCCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

307

Amino Acids

34.27

Weight (kDa)

5.95

Isoelectric Point (pI)

58.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59350 AT5G59350 AT5G59350
fragaria_vesca	FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750
malus_domestica	MD00G1137200.v1.1 MD11G1111600.v1.1
prunus_persica	Prupe.6G080000_v2.0.a1 Prupe.6G080000_v2.0.a1
pyrus_communis	pycom03g07910 pycom11g09220 pycom16g22780
rosa_chinensis	RchiOBHm_Chr5g0063921
rosa_laevigata	RLG00000035689
rosa_multiflora	Rmu_sc0000552.1_g000025
rosa_roxburghii	Rroxscaffold_1G00016850
rosa_rugosa	Rorug05G0361100 Rorug05G0361100 Rorug05G0361100
rosa_samantha	Rh5AG419600 Rh5BG435500 Rh5CG458600 Rh5DG448600
rosa_wichuraiana	Rw5G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	800
Acc65I	GGTACC	1 cut(s)	154
AccB1I	GGYRCC	2 cut(s)	48, 154
AciI	CCGC	1 cut(s)	365
AcsI	RAATTY	1 cut(s)	712
AcuI	CTGAAG	2 cut(s)	438, 692
AfaI	GTAC	2 cut(s)	156, 888
AfiI	CCNNNNNNNGG	4 cut(s)	58, 151, 268, 450
AgsI	TTSAA	8 cut(s)	125, 164, 301, 538, 571, 584, 640, 873
AluBI	AGCT	6 cut(s)	36, 76, 337, 752, 841, 876
AluI	AGCT	6 cut(s)	36, 76, 337, 752, 841, 876
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	337
AlwNI	CAGNNNCTG	1 cut(s)	599
AoxI	GGCC	4 cut(s)	303, 361, 719, 913
ApoI	RAATTY	1 cut(s)	712
Asp718I	GGTACC	1 cut(s)	154
AspS9I	GGNCC	4 cut(s)	362, 441, 719, 914
AsuHPI	GGTGA	3 cut(s)	326, 522, 615
AvaII	GGWCC	1 cut(s)	441
BanI	GGYRCC	2 cut(s)	48, 154
BanII	GRGCYC	1 cut(s)	339
BbsI	GAAGAC	2 cut(s)	324, 519
Bbv12I	GWGCWC	1 cut(s)	339
BccI	CCATC	3 cut(s)	676, 763, 782
BcoDI	GTCTC	1 cut(s)	337
BfaI	CTAG	4 cut(s)	255, 432, 708, 911
BglII	AGATCT	1 cut(s)	617
Bme18I	GGWCC	1 cut(s)	441
BmgT120I	GGNCC	4 cut(s)	362, 441, 719, 914
BmiI	GGNNCC	5 cut(s)	50, 156, 280, 442, 720
BmrI	ACTGGG	1 cut(s)	284
BmsI	GCATC	3 cut(s)	412, 643, 713
BmuI	ACTGGG	1 cut(s)	284
BpiI	GAAGAC	2 cut(s)	324, 519
BpuEI	CTTGAG	1 cut(s)	52
BsaJI	CCNNGG	4 cut(s)	324, 368, 562, 882
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 151, 268, 450
Bse1I	ACTGG	2 cut(s)	279, 900
BseDI	CCNNGG	4 cut(s)	324, 368, 562, 882
BseGI	GGATG	1 cut(s)	658
BseLI	CCNNNNNNNGG	4 cut(s)	58, 151, 268, 450
BseMII	CTCAG	3 cut(s)	213, 591, 605
BseNI	ACTGG	2 cut(s)	279, 900
BseRI	GAGGAG	3 cut(s)	44, 674, 897
BsgI	GTGCAG	1 cut(s)	332
BshFI	GGCC	4 cut(s)	305, 363, 721, 915
BshNI	GGYRCC	2 cut(s)	48, 154
BsiHKAI	GWGCWC	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	787
BslI	CCNNNNNNNGG	4 cut(s)	58, 151, 268, 450
BsmAI	GTCTC	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	787
BsnI	GGCC	4 cut(s)	305, 363, 721, 915
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	2 cut(s)	463, 617
Bsp19I	CCATGG	1 cut(s)	562
BspACI	CCGC	1 cut(s)	365
BspANI	GGCC	4 cut(s)	305, 363, 721, 915
BspCNI	CTCAG	3 cut(s)	214, 592, 606
BspHI	TCATGA	1 cut(s)	339
BspLI	GGNNCC	5 cut(s)	50, 156, 280, 442, 720
BspQI	GCTCTTC	1 cut(s)	883
BspT107I	GGYRCC	2 cut(s)	48, 154
BsrI	ACTGG	2 cut(s)	279, 900
BssECI	CCNNGG	4 cut(s)	324, 368, 562, 882
BssMI	GATC	2 cut(s)	463, 617
BssT1I	CCWWGG	3 cut(s)	368, 562, 882
Bst4CI	ACNGT	2 cut(s)	325, 864
Bst6I	CTCTTC	4 cut(s)	383, 430, 668, 883
BstC8I	GCNNGC	3 cut(s)	361, 365, 723
BstDEI	CTNAG	3 cut(s)	222, 600, 614
BstDSI	CCRYGG	2 cut(s)	324, 562
BstF5I	GGATG	1 cut(s)	658
BstKTI	GATC	2 cut(s)	466, 620
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	2 cut(s)	463, 617
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstV2I	GAAGAC	2 cut(s)	324, 519
BstX2I	RGATCY	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	617
BsuRI	GGCC	4 cut(s)	305, 363, 721, 915
BtgI	CCRYGG	2 cut(s)	324, 562
BtsCI	GGATG	1 cut(s)	658
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	2 cut(s)	483, 893
Cac8I	GCNNGC	3 cut(s)	361, 365, 723
CaiI	CAGNNNCTG	1 cut(s)	599
CciI	TCATGA	1 cut(s)	339
Cfr13I	GGNCC	4 cut(s)	362, 441, 719, 914
Csp6I	GTAC	2 cut(s)	155, 887
CviAII	CATG	2 cut(s)	340, 563
CviQI	GTAC	2 cut(s)	155, 887
DdeI	CTNAG	3 cut(s)	222, 600, 614
DpnI	GATC	2 cut(s)	465, 619
DpnII	GATC	2 cut(s)	463, 617
Eam1104I	CTCTTC	4 cut(s)	383, 430, 668, 883
EarI	CTCTTC	4 cut(s)	383, 430, 668, 883
Ecl136II	GAGCTC	1 cut(s)	337
Eco130I	CCWWGG	3 cut(s)	368, 562, 882
Eco24I	GRGCYC	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	441
Eco53kI	GAGCTC	1 cut(s)	337
Eco57I	CTGAAG	2 cut(s)	438, 692
EcoICRI	GAGCTC	1 cut(s)	337
EcoO109I	RGGNCCY	2 cut(s)	719, 914
EcoT14I	CCWWGG	3 cut(s)	368, 562, 882
EcoT38I	GRGCYC	1 cut(s)	339
ErhI	CCWWGG	3 cut(s)	368, 562, 882
FaeI	CATG	2 cut(s)	343, 566
FaiI	YATR	7 cut(s)	91, 312, 341, 386, 564, 800, 846
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FaqI	GGGAC	1 cut(s)	787
FatI	CATG	2 cut(s)	339, 562
FauI	CCCGC	1 cut(s)	372
FokI	GGATG	1 cut(s)	665
FriOI	GRGCYC	1 cut(s)	339
FspBI	CTAG	4 cut(s)	255, 432, 708, 911
HaeIII	GGCC	4 cut(s)	305, 363, 721, 915
Hin1II	CATG	2 cut(s)	343, 566
HinfI	GANTC	9 cut(s)	105, 290, 329, 413, 548, 567, 584, 804, 829
HphI	GGTGA	3 cut(s)	326, 522, 615
Hpy188I	TCNGA	5 cut(s)	223, 334, 418, 468, 834
Hpy188III	TCNNGA	6 cut(s)	340, 432, 444, 545, 708, 734
HpyAV	CCTTC	3 cut(s)	295, 519, 879
HpyCH4III	ACNGT	2 cut(s)	325, 864
HpyCH4V	TGCA	4 cut(s)	196, 349, 425, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	3 cut(s)	222, 600, 614
Hsp92II	CATG	2 cut(s)	343, 566
KpnI	GGTACC	1 cut(s)	158
Kzo9I	GATC	2 cut(s)	463, 617
LguI	GCTCTTC	1 cut(s)	883
LmnI	GCTCC	1 cut(s)	757
LweI	GCATC	3 cut(s)	412, 643, 713
MaeI	CTAG	4 cut(s)	255, 432, 708, 911
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	2 cut(s)	465, 619
MboI	GATC	2 cut(s)	463, 617
MfeI	CAATTG	1 cut(s)	187
MflI	RGATCY	1 cut(s)	617
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	6 cut(s)	133, 164, 187, 250, 307, 712
MlyI	GAGTC	3 cut(s)	542, 798, 838
MseI	TTAA	4 cut(s)	177, 521, 647, 922
MunI	CAATTG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	68
NcoI	CCATGG	1 cut(s)	562
NdeII	GATC	2 cut(s)	463, 617
NlaIII	CATG	2 cut(s)	343, 566
NlaIV	GGNNCC	5 cut(s)	50, 156, 280, 442, 720
NmuCI	GTSAC	1 cut(s)	257
PagI	TCATGA	1 cut(s)	339
PciSI	GCTCTTC	1 cut(s)	883
PfeI	GAWTC	6 cut(s)	105, 290, 329, 413, 567, 584
PleI	GAGTC	3 cut(s)	542, 798, 837
PpsI	GAGTC	3 cut(s)	542, 798, 837
PsiI	TTATAA	1 cut(s)	800
Psp124BI	GAGCTC	1 cut(s)	339
PspN4I	GGNNCC	5 cut(s)	50, 156, 280, 442, 720
PspPI	GGNCC	4 cut(s)	362, 441, 719, 914
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	1 cut(s)	617
RsaI	GTAC	2 cut(s)	156, 888
RsaNI	GTAC	2 cut(s)	155, 887
SacI	GAGCTC	1 cut(s)	339
SapI	GCTCTTC	1 cut(s)	883
SaqAI	TTAA	4 cut(s)	177, 521, 647, 922
Sau3AI	GATC	2 cut(s)	463, 617
Sau96I	GGNCC	4 cut(s)	362, 441, 719, 914
SchI	GAGTC	3 cut(s)	542, 798, 838
SduI	GDGCHC	1 cut(s)	339
SfaNI	GCATC	3 cut(s)	412, 643, 713
SinI	GGWCC	1 cut(s)	441
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	6 cut(s)	133, 164, 187, 250, 307, 712
SsiI	CCGC	1 cut(s)	365
SspMI	CTAG	4 cut(s)	255, 432, 708, 911
SstI	GAGCTC	1 cut(s)	339
StyI	CCWWGG	3 cut(s)	368, 562, 882
TaaI	ACNGT	2 cut(s)	325, 864
TaqI	TCGA	1 cut(s)	764
TasI	AATT	6 cut(s)	133, 164, 187, 250, 307, 712
TfiI	GAWTC	6 cut(s)	105, 290, 329, 413, 567, 584
Tru1I	TTAA	4 cut(s)	177, 521, 647, 922
Tru9I	TTAA	4 cut(s)	177, 521, 647, 922
TscAI	CASTG	2 cut(s)	483, 900
TseFI	GTSAC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	3 cut(s)	620, 833, 891
TspRI	CASTG	2 cut(s)	483, 900
VpaK11BI	GGWCC	1 cut(s)	441
XapI	RAATTY	1 cut(s)	712
XbaI	TCTAGA	2 cut(s)	431, 707
XspI	CTAG	4 cut(s)	255, 432, 708, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.