Rorug05G0361100

CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003131
Physical Location & Seq
Forward (+)
47639101 .. 47641178
2078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0361100.1

Sequence Viewer

Length: 345 bp
ATGCATTCCATTGCTTTACCTCCTCCTTGTTGTTCTAGATTGATTGAAGAGGGAAATGGTCGGAAGTCAATTCCTCAATTTGGAGGATGGGAACAAAACGCCGCAGTAGAGCCTACCAGCTATACTGTGGTGTTTAGTCAAGCTCGTGCTAACCGGAAGCAAAATAAGACTGACTTGACCGAATTCAAGCGCAACAGCCTTGGAAATGAACAGGAATTAATGGCTGCTCAAGGCCATCATGATCATCGTCATCATTCTGATGATTCTGTTACGACGAAAAAGACATCATCTCCATTTAATTTTCTTTTGTCTCTCTTTTCATGCAGAGGAAAAAGACAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CX9C

Protein Analysis

114

Amino Acids

12.87

Weight (kDa)

9.22

Isoelectric Point (pI)

58.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AvrRpt-cleavage PF05627 20 - 53 7.6e-10 Cleavage site for pathogenic type III effector avirulence factor Avr
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 102
AcsI RAATTY 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 2 cut(s) 47, 187
AluBI AGCT 2 cut(s) 120, 143
AluI AGCT 2 cut(s) 120, 143
Alw26I GTCTC 1 cut(s) 315
AoxI GGCC 1 cut(s) 232
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 1 cut(s) 182
AseI ATTAAT 1 cut(s) 218
AspLEI GCGC 1 cut(s) 192
BauI CACGAG 1 cut(s) 144
BbvI GCAGC 1 cut(s) 211
BccI CCATC 2 cut(s) 81, 243
BclI TGATCA 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 1 cut(s) 36
BisI GCNGC 2 cut(s) 102, 225
BlsI GCNGC 2 cut(s) 103, 226
BpuEI CTTGAG 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 199
BsaWI WCCGGW 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 274, 304
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse3DI GCAATG 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMI GCAATG 1 cut(s) 9
BseRI GAGGAG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 211
BshFI GGCC 1 cut(s) 234
BsiSI CCGG 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 315
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 1 cut(s) 234
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 1 cut(s) 102
BspANI GGCC 1 cut(s) 234
BspHI TCATGA 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 1 cut(s) 241
BssSI CACGAG 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 199
Bst2BI CACGAG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 42
BstF5I GGATG 1 cut(s) 92
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 234
BtsCI GGATG 1 cut(s) 92
CciI TCATGA 1 cut(s) 238
CfoI GCGC 1 cut(s) 192
CviAII CATG 2 cut(s) 239, 321
CviJI RGCY 6 cut(s) 112, 120, 143, 198, 224, 234
CviKI_1 RGCY 6 cut(s) 112, 120, 143, 198, 224, 234
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 199
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 2 cut(s) 242, 324
FaiI YATR 3 cut(s) 123, 240, 322
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 2 cut(s) 238, 320
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 2 cut(s) 102, 225
FokI GGATG 1 cut(s) 99
Fsp4HI GCNGC 2 cut(s) 102, 225
FspBI CTAG 1 cut(s) 36
GlaI GCGC 1 cut(s) 191
GluI GCNGC 2 cut(s) 102, 225
HaeIII GGCC 1 cut(s) 234
HapII CCGG 1 cut(s) 154
HhaI GCGC 1 cut(s) 192
Hin1II CATG 2 cut(s) 242, 324
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HinfI GANTC 1 cut(s) 263
HpaII CCGG 1 cut(s) 154
Hpy188I TCNGA 3 cut(s) 63, 259, 344
Hpy188III TCNNGA 2 cut(s) 36, 239
Hpy99I CGWCG 1 cut(s) 277
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 4, 324
Hsp92II CATG 2 cut(s) 242, 324
HspAI GCGC 1 cut(s) 190
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 1 cut(s) 241
LpnPI CCDG 3 cut(s) 130, 167, 197
Lsp1109I GCAGC 1 cut(s) 211
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 268
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 1 cut(s) 59
MluCI AATT 6 cut(s) 69, 77, 182, 215, 298, 338
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 6 cut(s) 30, 33, 43, 77, 84, 320
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 218, 297
MslI CAYNNNNRTG 1 cut(s) 258
MspI CCGG 1 cut(s) 154
Mva1269I GAATGC 1 cut(s) 4
NdeII GATC 1 cut(s) 241
NlaIII CATG 2 cut(s) 242, 324
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 238
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 2 cut(s) 103, 226
PshBI ATTAAT 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 2 cut(s) 218, 297
SatI GCNGC 2 cut(s) 102, 225
Sau3AI GATC 1 cut(s) 241
SetI ASST 3 cut(s) 22, 122, 145
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
Sse9I AATT 6 cut(s) 69, 77, 182, 215, 298, 338
SsiI CCGC 1 cut(s) 102
SspMI CTAG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 127
TaqII GACCGA 1 cut(s) 194
TasI AATT 6 cut(s) 69, 77, 182, 215, 298, 338
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 2 cut(s) 218, 297
Tru9I TTAA 2 cut(s) 218, 297
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 222, 309
VspI ATTAAT 1 cut(s) 218
XapI RAATTY 1 cut(s) 182
XbaI TCTAGA 1 cut(s) 35
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XspI CTAG 1 cut(s) 36
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.