pycom11g09210

CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003131
Physical Location & Seq
Reverse (-)
7395561 .. 7396046
486 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g09210.1

Sequence Viewer

Length: 369 bp
ATGTTTGTTGTAGCTTTTCTCGTGATGTATTTGATTTTCTTTGCAACTGAACTTCTCCAGTCTTCTTTCAAAAGTCGGGTACCCCTAACAGTTTCTTGCTTGGATAGGTGTTCTTCAAATCATAAAATGGGTCGGAAGGTTGGTACGGTATATATAAATCCAAAGAAATTTGGGACTTTTCACAAACCTTGCATGAAGGAAATGATAGCATTTCTCAACTGCATGGCTACTAACCAGCTCTGTGATGATAAGTGTGTAAAGCAGAAGGAACTTTTGGGTACTTGTATGGAGGCTCAGAGCAACAAAAACAGAAAGTCAATGGGAAGCATCAATTACCACTTGCAGAGGCTGAGCAGGGGAAGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CX9C

Protein Analysis

123

Amino Acids

14.0

Weight (kDa)

9.77

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CX9C PF16860 62 - 98 8.2e-08 CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 79
AccB1I GGYRCC 1 cut(s) 79
AcsI RAATTY 1 cut(s) 167
AfaI GTAC 3 cut(s) 81, 145, 280
AgsI TTSAA 2 cut(s) 70, 117
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 2 cut(s) 14, 238
AluI AGCT 2 cut(s) 14, 238
AlwNI CAGNNNCTG 1 cut(s) 349
ApoI RAATTY 1 cut(s) 167
Asp718I GGTACC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 79
BauI CACGAG 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 54
BlpI GCTNAGC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 81
BmsI GCATC 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 41
Bpu1102I GCTNAGC 1 cut(s) 350
Bse1I ACTGG 1 cut(s) 58
BseMII CTCAG 2 cut(s) 308, 341
BseNI ACTGG 1 cut(s) 58
BshNI GGYRCC 1 cut(s) 79
BslFI GGGAC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 187
Bsp1720I GCTNAGC 1 cut(s) 350
BspCNI CTCAG 2 cut(s) 307, 342
BspLI GGNNCC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 79
BsrI ACTGG 1 cut(s) 58
BssSI CACGAG 1 cut(s) 20
Bst2BI CACGAG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 91, 148
BstDEI CTNAG 2 cut(s) 294, 350
BstV2I GAAGAC 1 cut(s) 54
CaiI CAGNNNCTG 1 cut(s) 349
Csp6I GTAC 3 cut(s) 80, 144, 279
CviAII CATG 2 cut(s) 193, 223
CviJI RGCY 5 cut(s) 14, 227, 238, 293, 349
CviKI_1 RGCY 5 cut(s) 14, 227, 238, 293, 349
CviQI GTAC 3 cut(s) 80, 144, 279
DdeI CTNAG 2 cut(s) 294, 350
FaeI CATG 2 cut(s) 196, 226
FaiI YATR 7 cut(s) 123, 151, 153, 155, 194, 224, 287
FaqI GGGAC 1 cut(s) 187
FatI CATG 2 cut(s) 192, 222
GsuI CTGGAG 1 cut(s) 41
Hin1II CATG 2 cut(s) 196, 226
Hpy188I TCNGA 2 cut(s) 135, 297
Hpy188III TCNNGA 1 cut(s) 22
HpyAV CCTTC 4 cut(s) 130, 190, 259, 354
HpyCH4III ACNGT 2 cut(s) 91, 148
HpyCH4V TGCA 4 cut(s) 44, 192, 222, 343
HpyF3I CTNAG 2 cut(s) 294, 350
Hsp92II CATG 2 cut(s) 196, 226
KpnI GGTACC 1 cut(s) 83
LpnPI CCDG 3 cut(s) 71, 248, 340
LweI GCATC 1 cut(s) 336
MboII GAAGA 2 cut(s) 54, 105
MluCI AATT 2 cut(s) 167, 331
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 2 cut(s) 283, 339
NlaIII CATG 2 cut(s) 196, 226
NlaIV GGNNCC 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 81
PstNI CAGNNNCTG 1 cut(s) 349
RsaI GTAC 3 cut(s) 81, 145, 280
RsaNI GTAC 3 cut(s) 80, 144, 279
SetI ASST 5 cut(s) 16, 110, 141, 190, 240
SfaNI GCATC 1 cut(s) 336
Sse9I AATT 2 cut(s) 167, 331
TaaI ACNGT 2 cut(s) 91, 148
TasI AATT 2 cut(s) 167, 331
TspDTI ATGAA 1 cut(s) 209
XapI RAATTY 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.