Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003131

Physical Location & Seq

Genomic Coordinates Reverse (-)

67877853 .. 67880181

Gene Structure 2329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0496800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCTGGCTCCTCCTCTGACAGCGGCACCGCCCCCCAGCCCCCTCACAAGCCTTCTTTTTCTTCTCTGGTCGGCCCGCTTCCGTTGCCGTTCATGGAGAATGGTGTGGTTTCAGTTCGTATCTCGGAGGCTCCTTTCCTCGGTGGTCTAGAACGCTGCAAGACAAACTTTGTGGGCAAGGCATTTTGTTATGCAAGGCGCTTACCATTTTTTTGGACTCAAATGTCCCAGCATGGCTTGCTATCTTTGCTGCAGTCATCCTTGTACTTGCTTTTACGAAGGTTCCTCACTAATTCTTATCTTTGGGAAGAGGCTCCGCCAATTCATACCGCTTCCTTGCATTTTGGTTACCTCCTCCATATAAGGGGAGCTTGCACTGGAAGGAGCTCATTATTTGACAACAGGGGAGCTCGTGAGTCTCAGGGAGCAGCAGCTTGTGGACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CX9C

Protein Analysis

148

Amino Acids

16.16

Weight (kDa)

9.34

Isoelectric Point (pI)

68.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47278 AT1G47278 AT1G47278
fragaria_vesca	FvH4_3g35770 FvH4_3g35770 FvH4_3g35770
malus_domestica	MD02G1271300.v1.1 MD11G1111500.v1.1
prunus_persica	Prupe.6G079900_v2.0.a1
pyrus_communis	pycom11g09210
rosa_chinensis	RchiOBHm_Chr5g0006711 RchiOBHm_Chr5g0063941
rosa_laevigata	RLG00000031419
rosa_multiflora	Rmu_sc0011986.1_g000001 Rmu_sc0017347.1_g000004 Rmu_sc0018387.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016840 Rroxscaffold_1G00069310
rosa_rugosa	Rorug04G0423800 Rorug04G0423900 Rorug05G0361100 Rorug05G0496800 Rorug05G0496900 Rorug05G0497000 Rorug05G0497100
rosa_samantha	Rh5AG051700 Rh5AG419800 Rh5BG435600 Rh5CG059200 Rh5CG458700 Rh5DG049700 Rh5DG448800 Rh6AG006000 Rh6CG004200 Rh6DG004100
rosa_wichuraiana	Rw5G005280 Rw5G039450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	26
AciI	CCGC	5 cut(s)	24, 30, 77, 317, 330
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	140, 364
AluBI	AGCT	4 cut(s)	371, 387, 410, 434
AluI	AGCT	4 cut(s)	371, 387, 410, 434
Alw21I	GWGCWC	2 cut(s)	389, 412
Alw26I	GTCTC	1 cut(s)	423
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	4 cut(s)	156, 250, 428, 431
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	26
BanII	GRGCYC	2 cut(s)	389, 412
BauI	CACGAG	1 cut(s)	411
Bbv12I	GWGCWC	2 cut(s)	389, 412
BbvI	GCAGC	4 cut(s)	143, 237, 440, 443
BceAI	ACGGC	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	251
BfoI	RGCGCY	1 cut(s)	202
BisI	GCNGC	5 cut(s)	25, 157, 251, 429, 432
BlsI	GCNGC	5 cut(s)	26, 158, 252, 430, 433
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	5 cut(s)	10, 28, 132, 284, 315
BsaJI	CCNNGG	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 364
Bse1I	ACTGG	1 cut(s)	382
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	1 cut(s)	257
BseLI	CCNNNNNNNGG	2 cut(s)	140, 364
BseMII	CTCAG	1 cut(s)	434
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	2 cut(s)	4, 344
BseXI	GCAGC	4 cut(s)	143, 237, 440, 443
BseYI	CCCAGC	2 cut(s)	36, 228
BshFI	GGCC	1 cut(s)	75
BshNI	GGYRCC	1 cut(s)	26
BsiHKAI	GWGCWC	2 cut(s)	389, 412
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	2 cut(s)	140, 364
BsmAI	GTCTC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	389, 412
BspACI	CCGC	5 cut(s)	24, 30, 77, 317, 330
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	433
BspLI	GGNNCC	5 cut(s)	10, 28, 132, 284, 315
BspMAI	CTGCAG	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	1 cut(s)	139
BssSI	CACGAG	1 cut(s)	411
Bst2BI	CACGAG	1 cut(s)	411
Bst4CI	ACNGT	1 cut(s)	444
Bst6I	CTCTTC	1 cut(s)	303
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstC8I	GCNNGC	4 cut(s)	7, 77, 239, 373
BstDEI	CTNAG	1 cut(s)	420
BstEII	GGTNACC	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	257
BstH2I	RGCGCY	1 cut(s)	202
BstHHI	GCGC	1 cut(s)	201
BstMAI	GTCTC	1 cut(s)	423
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 238, 247
BstPI	GGTNACC	1 cut(s)	347
BstSFI	CTRYAG	1 cut(s)	251
BstV1I	GCAGC	4 cut(s)	143, 237, 440, 443
BstXI	CCANNNNNNTGG	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	257
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	4 cut(s)	7, 77, 239, 373
CfoI	GCGC	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	265
CspCI	CAANNNNNGTGG	2 cut(s)	153, 188
CviAII	CATG	2 cut(s)	94, 233
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	420
DrdI	GACNNNNNNGTC	1 cut(s)	223
DseDI	GACNNNNNNGTC	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	306
Ecl136II	GAGCTC	2 cut(s)	387, 410
Eco24I	GRGCYC	2 cut(s)	389, 412
Eco53kI	GAGCTC	2 cut(s)	387, 410
Eco91I	GGTNACC	1 cut(s)	347
EcoICRI	GAGCTC	2 cut(s)	387, 410
EcoO65I	GGTNACC	1 cut(s)	347
EcoT38I	GRGCYC	2 cut(s)	389, 412
FaeI	CATG	2 cut(s)	97, 236
FaiI	YATR	6 cut(s)	95, 192, 234, 327, 360, 362
FalI	AAGNNNNNCTT	4 cut(s)	152, 184, 355, 387
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	2 cut(s)	93, 232
FauI	CCCGC	1 cut(s)	84
Fnu4HI	GCNGC	5 cut(s)	25, 157, 251, 429, 432
FokI	GGATG	1 cut(s)	244
FriOI	GRGCYC	2 cut(s)	389, 412
Fsp4HI	GCNGC	5 cut(s)	25, 157, 251, 429, 432
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	5 cut(s)	25, 157, 251, 429, 432
GsaI	CCCAGC	2 cut(s)	40, 232
HaeII	RGCGCY	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	97, 236
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	217, 416
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188I	TCNGA	2 cut(s)	19, 127
Hpy188III	TCNNGA	2 cut(s)	149, 413
Hpy8I	GTNNAC	1 cut(s)	440
HpyAV	CCTTC	3 cut(s)	63, 273, 375
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4V	TGCA	5 cut(s)	159, 194, 253, 340, 375
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 238, 247
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	2 cut(s)	97, 236
HspAI	GCGC	1 cut(s)	199
LmnI	GCTCC	7 cut(s)	14, 136, 319, 368, 384, 407, 425
LpnPI	CCDG	6 cut(s)	50, 53, 242, 363, 388, 407
Lsp1109I	GCAGC	4 cut(s)	143, 237, 440, 443
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	347
MboII	GAAGA	2 cut(s)	54, 320
MhlI	GDGCHC	2 cut(s)	389, 412
MluCI	AATT	2 cut(s)	292, 321
MlyI	GAGTC	2 cut(s)	211, 425
MnlI	CCTC	9 cut(s)	22, 25, 54, 121, 149, 296, 304, 362, 365
MspA1I	CMGCKG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	85, 238, 247
NlaIII	CATG	2 cut(s)	97, 236
NlaIV	GGNNCC	5 cut(s)	10, 28, 132, 284, 315
PkrI	GCNGC	5 cut(s)	26, 158, 252, 430, 433
PleI	GAGTC	2 cut(s)	211, 424
PpsI	GAGTC	2 cut(s)	211, 424
Psp124BI	GAGCTC	2 cut(s)	389, 412
PspEI	GGTNACC	1 cut(s)	347
PspFI	CCCAGC	2 cut(s)	36, 228
PspN4I	GGNNCC	5 cut(s)	10, 28, 132, 284, 315
PspPI	GGNCC	1 cut(s)	74
PstI	CTGCAG	1 cut(s)	255
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SacI	GAGCTC	2 cut(s)	389, 412
SatI	GCNGC	5 cut(s)	25, 157, 251, 429, 432
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	2 cut(s)	211, 425
SduI	GDGCHC	2 cut(s)	389, 412
SetI	ASST	6 cut(s)	284, 354, 373, 389, 412, 436
SfcI	CTRYAG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	292, 321
SsiI	CCGC	5 cut(s)	24, 30, 77, 317, 330
SspMI	CTAG	1 cut(s)	149
SstI	GAGCTC	2 cut(s)	389, 412
TaaI	ACNGT	1 cut(s)	444
TasI	AATT	2 cut(s)	292, 321
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	1 cut(s)	27
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	4 cut(s)	156, 250, 428, 431
TspDTI	ATGAA	2 cut(s)	82, 314
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	382
XbaI	TCTAGA	1 cut(s)	148
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.