Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003131

Physical Location & Seq

Genomic Coordinates Reverse (-)

9864418 .. 9866541

Gene Structure 2124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1111500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGAAGGAAATGATAGCATTTCTCAACTGCATGGCTCCAAACCAGCTCTGTGATGATAAGTGTGTAAAGCAGAAGGAACTTTTGGGTACTTGTATGGAGGCTCAGAGCAACAAAAACAGAAAGTCAATGGGAAGCATCAATTACCACTTGCAGAGGCTGAGCAGGGGAAGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CX9C

Protein Analysis

59

Amino Acids

6.69

Weight (kDa)

9.51

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003131)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47278 AT1G47278 AT1G47278
fragaria_vesca	FvH4_3g35770 FvH4_3g35770 FvH4_3g35770
malus_domestica	MD02G1271300.v1.1 MD11G1111500.v1.1
prunus_persica	Prupe.6G079900_v2.0.a1
pyrus_communis	pycom11g09210
rosa_chinensis	RchiOBHm_Chr5g0006711 RchiOBHm_Chr5g0063941
rosa_laevigata	RLG00000031419
rosa_multiflora	Rmu_sc0011986.1_g000001 Rmu_sc0017347.1_g000004 Rmu_sc0018387.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016840 Rroxscaffold_1G00069310
rosa_rugosa	Rorug04G0423800 Rorug04G0423900 Rorug05G0361100 Rorug05G0496800 Rorug05G0496900 Rorug05G0497000 Rorug05G0497100
rosa_samantha	Rh5AG051700 Rh5AG419800 Rh5BG435600 Rh5CG059200 Rh5CG458700 Rh5DG049700 Rh5DG448800 Rh6AG006000 Rh6CG004200 Rh6DG004100
rosa_wichuraiana	Rw5G005280 Rw5G039450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	88
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
AlwNI	CAGNNNCTG	1 cut(s)	157
BlpI	GCTNAGC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	36
BmsI	GCATC	1 cut(s)	144
Bpu1102I	GCTNAGC	1 cut(s)	158
BseMII	CTCAG	2 cut(s)	116, 149
Bsp1720I	GCTNAGC	1 cut(s)	158
BspCNI	CTCAG	2 cut(s)	115, 150
BspLI	GGNNCC	1 cut(s)	36
BstDEI	CTNAG	2 cut(s)	102, 158
CaiI	CAGNNNCTG	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	4 cut(s)	35, 46, 101, 157
CviKI_1	RGCY	4 cut(s)	35, 46, 101, 157
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	2 cut(s)	102, 158
FaeI	CATG	1 cut(s)	34
FaiI	YATR	2 cut(s)	32, 95
FatI	CATG	1 cut(s)	30
Hin1II	CATG	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	105
HpyAV	CCTTC	2 cut(s)	67, 162
HpyCH4V	TGCA	2 cut(s)	30, 151
HpyF3I	CTNAG	2 cut(s)	102, 158
Hsp92II	CATG	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	2 cut(s)	56, 148
LweI	GCATC	1 cut(s)	144
MluCI	AATT	1 cut(s)	139
MnlI	CCTC	2 cut(s)	91, 147
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	157
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
SetI	ASST	1 cut(s)	48
SfaNI	GCATC	1 cut(s)	144
SgeI	CNNG	4 cut(s)	43, 55, 102, 160
Sse9I	AATT	1 cut(s)	139
TasI	AATT	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.