RLG00000031419

CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003131
Physical Location & Seq
Forward (+)
4979235 .. 4981921
2687 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031419

Sequence Viewer

Length: 342 bp
ATGTCGACCTCTAGTTGTCTTCGATCGGAGGTGGTAGAAACATCTATTCGATTTTCCTCAGCATCACAGCTCTATGCAATCATCGATCTACCCGTGAAAAGAATGGGTCGCAAAGCAGGTTCGATATACATTAATCCAAAGAAATTTGGTGCTTTTCACAAACCTTGCATGAAGGAAATGGTGACATTTCTCAGTTGCTTGGCTCTTAACAGCAACTGTGATGAGAAATGTGTAAGGCAGAAGGACCTTTTAAGTACTTGCATGGATTCTCAGAGCAAGAAAAACAAGTCAATGGGAAGCATTAATTACCACTTGCAGAGGCTGAGCAGGGGAAGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CX9C

Protein Analysis

114

Amino Acids

12.75

Weight (kDa)

9.8

Isoelectric Point (pI)

66.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CX9C PF16860 54 - 91 3.9e-08 CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 143
AfaI GTAC 1 cut(s) 256
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
AlwNI CAGNNNCTG 2 cut(s) 216, 322
ApoI RAATTY 1 cut(s) 143
AseI ATTAAT 2 cut(s) 132, 303
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 193
AvaII GGWCC 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 11
BbvCI CCTCAGC 1 cut(s) 58
BfaI CTAG 1 cut(s) 12
BfuAI ACCTGC 1 cut(s) 107
BlpI GCTNAGC 1 cut(s) 323
BmcAI AGTACT 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmsI GCATC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 11
Bpu10I CCTNAGC 1 cut(s) 58
Bpu1102I GCTNAGC 1 cut(s) 323
Bsa29I ATCGAT 1 cut(s) 84
BseCI ATCGAT 1 cut(s) 84
BseMII CTCAG 4 cut(s) 72, 205, 284, 314
Bsh1285I CGRYCG 1 cut(s) 26
BshVI ATCGAT 1 cut(s) 84
BsiEI CGRYCG 1 cut(s) 26
Bsp143I GATC 2 cut(s) 23, 85
Bsp1720I GCTNAGC 1 cut(s) 323
BspCNI CTCAG 4 cut(s) 71, 204, 283, 315
BspDI ATCGAT 1 cut(s) 84
BspMI ACCTGC 1 cut(s) 107
BssMI GATC 2 cut(s) 23, 85
Bst4CI ACNGT 1 cut(s) 218
BstDEI CTNAG 4 cut(s) 58, 191, 270, 323
BstKTI GATC 2 cut(s) 26, 88
BstMBI GATC 2 cut(s) 23, 85
BstMCI CGRYCG 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 11
Bsu15I ATCGAT 1 cut(s) 84
BsuTUI ATCGAT 1 cut(s) 84
BveI ACCTGC 1 cut(s) 107
CaiI CAGNNNCTG 2 cut(s) 216, 322
Cfr13I GGNCC 1 cut(s) 244
ClaI ATCGAT 1 cut(s) 84
Csp6I GTAC 1 cut(s) 255
CviAII CATG 2 cut(s) 169, 262
CviJI RGCY 3 cut(s) 70, 203, 322
CviKI_1 RGCY 3 cut(s) 70, 203, 322
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 4 cut(s) 58, 191, 270, 323
DpnI GATC 2 cut(s) 25, 87
DpnII GATC 2 cut(s) 23, 85
Eco47I GGWCC 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 244
FaeI CATG 2 cut(s) 172, 265
FaiI YATR 4 cut(s) 75, 127, 170, 263
FatI CATG 2 cut(s) 168, 261
FblI GTMKAC 1 cut(s) 5
FspBI CTAG 1 cut(s) 12
Hin1II CATG 2 cut(s) 172, 265
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 266
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 28, 273
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 3 cut(s) 166, 235, 327
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4V TGCA 4 cut(s) 77, 168, 261, 316
HpyF3I CTNAG 4 cut(s) 58, 191, 270, 323
Hsp92II CATG 2 cut(s) 172, 265
Kzo9I GATC 2 cut(s) 23, 85
LpnPI CCDG 2 cut(s) 102, 313
LweI GCATC 1 cut(s) 71
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 181
MalI GATC 2 cut(s) 25, 87
MboI GATC 2 cut(s) 23, 85
MboII GAAGA 1 cut(s) 11
MluCI AATT 2 cut(s) 143, 304
MnlI CCTC 4 cut(s) 19, 22, 67, 312
MseI TTAA 4 cut(s) 132, 207, 251, 303
NdeII GATC 2 cut(s) 23, 85
NlaIII CATG 2 cut(s) 172, 265
NmuCI GTSAC 1 cut(s) 181
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PfeI GAWTC 1 cut(s) 266
Ple19I CGATCG 1 cut(s) 26
PpuMI RGGWCCY 1 cut(s) 244
PshBI ATTAAT 2 cut(s) 132, 303
Psp5II RGGWCCY 1 cut(s) 244
PspPI GGNCC 1 cut(s) 244
PspPPI RGGWCCY 1 cut(s) 244
PstNI CAGNNNCTG 2 cut(s) 216, 322
PvuI CGATCG 1 cut(s) 26
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 4 cut(s) 132, 207, 251, 303
Sau3AI GATC 2 cut(s) 23, 85
Sau96I GGNCC 1 cut(s) 244
ScaI AGTACT 1 cut(s) 256
SetI ASST 6 cut(s) 11, 33, 72, 121, 166, 249
SfaNI GCATC 1 cut(s) 71
SinI GGWCC 1 cut(s) 244
Sse9I AATT 2 cut(s) 143, 304
SspMI CTAG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 218
TaqI TCGA 5 cut(s) 5, 22, 49, 84, 122
TasI AATT 2 cut(s) 143, 304
TatI WGTACW 1 cut(s) 254
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 4 cut(s) 132, 207, 251, 303
Tru9I TTAA 4 cut(s) 132, 207, 251, 303
TseFI GTSAC 1 cut(s) 181
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 244
VspI ATTAAT 2 cut(s) 132, 303
XapI RAATTY 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.