FvH4_3g35770

CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003131
Physical Location & Seq
Forward (+)
30690626 .. 30693164
2539 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35770.t1

Sequence Viewer

Length: 240 bp
ATGGGTCGCAAAGCAGGTTCGATATACATTAATCCAAAGAAATTCGGTGCTTTTCACAAACCTTGCATGAAGGAAATGGTAACATTTCTCAGTTGCTTGGCTCTTAACAGCAACTGTGACGAGAAGTGTGTAAGGCAGAAGGAGCTTTTGAGTACCTGCATGGATTCTCAGAGCAACAAAAACAAATCAATGGGAAGCATTAATTACCACTTGCAGAGGCTGAGCAGGGGAAGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CX9C

Protein Analysis

80

Amino Acids

8.99

Weight (kDa)

9.8

Isoelectric Point (pI)

51.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CX9C PF16860 20 - 57 4.1e-08 CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 5, 164
AcsI RAATTY 1 cut(s) 41
AfaI GTAC 1 cut(s) 154
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
AlwNI CAGNNNCTG 2 cut(s) 114, 220
ApoI RAATTY 1 cut(s) 41
AseI ATTAAT 2 cut(s) 30, 201
BfuAI ACCTGC 2 cut(s) 5, 164
BlpI GCTNAGC 1 cut(s) 221
Bpu1102I GCTNAGC 1 cut(s) 221
BseMII CTCAG 3 cut(s) 103, 182, 212
Bsp1720I GCTNAGC 1 cut(s) 221
BspCNI CTCAG 3 cut(s) 102, 181, 213
BspMI ACCTGC 2 cut(s) 5, 164
Bst4CI ACNGT 1 cut(s) 116
BstDEI CTNAG 3 cut(s) 89, 168, 221
BstMWI GCNNNNNNNGC 1 cut(s) 142
BveI ACCTGC 2 cut(s) 5, 164
CaiI CAGNNNCTG 2 cut(s) 114, 220
Csp6I GTAC 1 cut(s) 153
CviAII CATG 2 cut(s) 67, 160
CviJI RGCY 3 cut(s) 101, 145, 220
CviKI_1 RGCY 3 cut(s) 101, 145, 220
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 3 cut(s) 89, 168, 221
FaeI CATG 2 cut(s) 70, 163
FaiI YATR 3 cut(s) 25, 68, 161
FatI CATG 2 cut(s) 66, 159
Hin1II CATG 2 cut(s) 70, 163
HinfI GANTC 1 cut(s) 164
Hpy188I TCNGA 1 cut(s) 171
HpyAV CCTTC 3 cut(s) 64, 133, 225
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 3 cut(s) 66, 159, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 3 cut(s) 89, 168, 221
Hsp92II CATG 2 cut(s) 70, 163
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 2 cut(s) 169, 211
MaeIII GTNAC 2 cut(s) 79, 116
MluCI AATT 2 cut(s) 41, 202
MnlI CCTC 1 cut(s) 210
MseI TTAA 3 cut(s) 30, 105, 201
MwoI GCNNNNNNNGC 1 cut(s) 142
NlaIII CATG 2 cut(s) 70, 163
NmuCI GTSAC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 164
PshBI ATTAAT 2 cut(s) 30, 201
PstNI CAGNNNCTG 2 cut(s) 114, 220
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SaqAI TTAA 3 cut(s) 30, 105, 201
SetI ASST 4 cut(s) 19, 64, 147, 158
SgeI CNNG 8 cut(s) 27, 75, 79, 109, 133, 168, 172, 223
Sse9I AATT 2 cut(s) 41, 202
TaaI ACNGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 20
TasI AATT 2 cut(s) 41, 202
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 3 cut(s) 30, 105, 201
Tru9I TTAA 3 cut(s) 30, 105, 201
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 83
VspI ATTAAT 2 cut(s) 30, 201
XapI RAATTY 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.