AT1G47278

CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003131
Physical Location & Seq
Forward (+)
17330819 .. 17332336
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47278.2

Sequence Viewer

Length: 243 bp
ATGGGGAGAAAGGCTGGAAATTTGTACATAAACCCGAAAAAGCTCGGGAATTTGGCGAAACCGTGTATGAAGGAAATGGTATCGTTCTTGAACTGTATGGCTCTTAACAATATCAAAGATGATAAATGTGAGAAACAGAAGCAACTCCTGAGTGTTTGTATGCAAGGCCAGTCGGATCATAAGAACAAGTCTTGGGGTAACATTAACTACCATTTGCAGAGGCTAACCCGTGGAAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CX9C

Protein Analysis

80

Amino Acids

9.21

Weight (kDa)

9.92

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CX9C PF16860 29 - 67 3.6e-10 CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 183
AcsI RAATTY 2 cut(s) 19, 49
AfaI GTAC 1 cut(s) 26
AgsI TTSAA 1 cut(s) 91
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
AlwI GGATC 1 cut(s) 183
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 1 cut(s) 166
ApoI RAATTY 2 cut(s) 19, 49
AvaI CYCGRG 1 cut(s) 44
BmeT110I CYCGRG 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 169
BshFI GGCC 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 44
BsnI GGCC 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 44
Bsp1407I TGTACA 1 cut(s) 24
Bsp143I GATC 1 cut(s) 175
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 141
BspPI GGATC 1 cut(s) 183
BsrGI TGTACA 1 cut(s) 24
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 1 cut(s) 175
Bst4CI ACNGT 2 cut(s) 63, 95
BstAUI TGTACA 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 149
BstDSI CCRYGG 1 cut(s) 229
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BsuRI GGCC 1 cut(s) 168
BtgI CCRYGG 1 cut(s) 229
Csp6I GTAC 1 cut(s) 25
CviJI RGCY 5 cut(s) 14, 43, 101, 168, 223
CviKI_1 RGCY 5 cut(s) 14, 43, 101, 168, 223
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 149
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 44
FaiI YATR 5 cut(s) 29, 68, 98, 161, 180
HaeIII GGCC 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 3 cut(s) 46, 88, 148
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 2 cut(s) 63, 95
HpyCH4V TGCA 2 cut(s) 163, 217
HpyF3I CTNAG 1 cut(s) 149
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 2 cut(s) 161, 182
MaeIII GTNAC 1 cut(s) 197
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MluCI AATT 2 cut(s) 19, 49
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 1 cut(s) 213
MseI TTAA 2 cut(s) 105, 204
NdeII GATC 1 cut(s) 175
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SaqAI TTAA 2 cut(s) 105, 204
Sau3AI GATC 1 cut(s) 175
SetI ASST 1 cut(s) 45
Sse9I AATT 2 cut(s) 19, 49
TaaI ACNGT 2 cut(s) 63, 95
TasI AATT 2 cut(s) 19, 49
TatI WGTACW 1 cut(s) 24
Tru1I TTAA 2 cut(s) 105, 204
Tru9I TTAA 2 cut(s) 105, 204
TspDTI ATGAA 1 cut(s) 83
XapI RAATTY 2 cut(s) 19, 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.