Rmu_sc0018387.1_g000007

CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018387.1
OG0003131
Physical Location & Seq
Reverse (-)
25726 .. 28047
2322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018387.1_g000007.1.cds

Sequence Viewer

Length: 351 bp
atgcgcatggagatgaaatcggtagagagagtgtggagagcgaagagtggagagcggaggtggttcgatcttcctcagcatcaccaggctcatcgatctacccgtgaaagaatgggtcgcaaagcaggttcgatatacattaatccaaagaaatttggtgcttttcacaaaccttgcatgaaggaaatggtgacatttctcagttgcttggctcttaacagcaactgtgatgagaaatgtgtaaggcagaaggaccttttgagtacttgcatggattctcagagcaagaaaaacaagtcaatgggaagcattaattaccacttgcagaggctgagcaggggaaggaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CX9C

Protein Analysis

116

Amino Acids

13.68

Weight (kDa)

10.3

Isoelectric Point (pI)

52.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 116
AccBSI CCGCTC 1 cut(s) 55
AciI CCGC 1 cut(s) 55
AcsI RAATTY 1 cut(s) 152
AfaI GTAC 1 cut(s) 265
AjnI CCWGG 1 cut(s) 84
AlwNI CAGNNNCTG 2 cut(s) 225, 331
ApoI RAATTY 1 cut(s) 152
AseI ATTAAT 2 cut(s) 141, 312
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 74, 202
AvaII GGWCC 1 cut(s) 253
BbvCI CCTCAGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 116
BlpI GCTNAGC 1 cut(s) 332
BmcAI AGTACT 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 88
Bpu10I CCTNAGC 1 cut(s) 75
Bpu1102I GCTNAGC 1 cut(s) 332
Bsa29I ATCGAT 1 cut(s) 94
BseBI CCWGG 1 cut(s) 86
BseCI ATCGAT 1 cut(s) 94
BseMII CTCAG 4 cut(s) 89, 214, 293, 323
BshVI ATCGAT 1 cut(s) 94
Bsp143I GATC 2 cut(s) 67, 95
Bsp1720I GCTNAGC 1 cut(s) 332
BspACI CCGC 1 cut(s) 55
BspCNI CTCAG 4 cut(s) 88, 213, 292, 324
BspDI ATCGAT 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 55
BssMI GATC 2 cut(s) 67, 95
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 38
BstDEI CTNAG 4 cut(s) 75, 200, 279, 332
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 2 cut(s) 70, 98
BstMBI GATC 2 cut(s) 67, 95
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
Bsu15I ATCGAT 1 cut(s) 94
BsuTUI ATCGAT 1 cut(s) 94
BveI ACCTGC 1 cut(s) 116
CaiI CAGNNNCTG 2 cut(s) 225, 331
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 253
ClaI ATCGAT 1 cut(s) 94
Csp6I GTAC 1 cut(s) 264
CviAII CATG 3 cut(s) 7, 178, 271
CviJI RGCY 3 cut(s) 89, 212, 331
CviKI_1 RGCY 3 cut(s) 89, 212, 331
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 4 cut(s) 75, 200, 279, 332
DpnI GATC 2 cut(s) 69, 97
DpnII GATC 2 cut(s) 67, 95
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 84
FaeI CATG 3 cut(s) 10, 181, 274
FaiI YATR 4 cut(s) 8, 136, 179, 272
FatI CATG 3 cut(s) 6, 177, 270
FspAI RTGCGCAY 1 cut(s) 5
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
HhaI GCGC 1 cut(s) 6
Hin1II CATG 3 cut(s) 10, 181, 274
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 1 cut(s) 275
HphI GGTGA 2 cut(s) 74, 202
Hpy188I TCNGA 1 cut(s) 282
HpyAV CCTTC 3 cut(s) 175, 244, 336
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4V TGCA 3 cut(s) 177, 270, 325
HpyF3I CTNAG 4 cut(s) 75, 200, 279, 332
Hsp92II CATG 3 cut(s) 10, 181, 274
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 67, 95
LpnPI CCDG 4 cut(s) 71, 98, 111, 322
LweI GCATC 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 190
MalI GATC 2 cut(s) 69, 97
MbiI CCGCTC 1 cut(s) 55
MboI GATC 2 cut(s) 67, 95
MboII GAAGA 2 cut(s) 55, 62
MluCI AATT 2 cut(s) 152, 313
MnlI CCTC 3 cut(s) 51, 84, 321
MseI TTAA 3 cut(s) 141, 216, 312
MslI CAYNNNNRTG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
NdeII GATC 2 cut(s) 67, 95
NlaIII CATG 3 cut(s) 10, 181, 274
NmuCI GTSAC 1 cut(s) 190
NsbI TGCGCA 1 cut(s) 5
PcsI WCGNNNNNNNCGW 1 cut(s) 100
PfeI GAWTC 1 cut(s) 275
PpuMI RGGWCCY 1 cut(s) 253
PshBI ATTAAT 2 cut(s) 141, 312
Psp5II RGGWCCY 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspPI GGNCC 1 cut(s) 253
PspPPI RGGWCCY 1 cut(s) 253
PstNI CAGNNNCTG 2 cut(s) 225, 331
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 3 cut(s) 141, 216, 312
Sau3AI GATC 2 cut(s) 67, 95
Sau96I GGNCC 1 cut(s) 253
ScaI AGTACT 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 86
SetI ASST 4 cut(s) 62, 130, 175, 258
SfaNI GCATC 1 cut(s) 88
SinI GGWCC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 2 cut(s) 152, 313
SsiI CCGC 1 cut(s) 55
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 227
TaqI TCGA 3 cut(s) 66, 94, 131
TasI AATT 2 cut(s) 152, 313
TatI WGTACW 1 cut(s) 263
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 3 cut(s) 141, 216, 312
Tru9I TTAA 3 cut(s) 141, 216, 312
TseFI GTSAC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 2 cut(s) 29, 194
VpaK11BI GGWCC 1 cut(s) 253
VspI ATTAAT 2 cut(s) 141, 312
XapI RAATTY 1 cut(s) 152
ZrmI AGTACT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.