Rorug04G0423800

CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003131
Physical Location & Seq
Reverse (-)
58281253 .. 58327102
45850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0423800.1

Sequence Viewer

Length: 9069 bp
ATGGTCAAAACAGTTTACTTGTATGGATTTCCCACTGTGGAGTCTCCAGAAGCAGTGACGAAATTTCTGGAGGAGTATACCGGAGAAGGAACTGTTCTCTCTGTGAATGTTCTTCCTCCAAAAGATGGCGCATCAAGATCATCTGCCACAGTTCAATTCACAACTGCCAAATGTGCTGAAATAATACTTTCATTAGCCGAAAAAAAACGCCTGTGGTACGGAGAGTCTTATCTGAAAGCTCGAGAATGGAAGCATGAAATGGCACCGAGATCAGAAGTCTTGGAGGATCCTGTGACACTTCACTTTGGATGCAAGATATCTGAGGAGAAGTTTTCGGTGCTTTGGACAAAATCAGATGTTTCTGTGAAATTTGGGATGGAACTGAAAAATATGCACTTGTCTTTCTCGTATGATGGTCTTAAATACAAGCTTGAGCTCCCATCTGACATTATTTTCCGGATTGAGCTGCATTGTCCATGTGATCAGTTTACAAAGTTTCTTCTCGTCCAGTTACGTGGTGCCCCTCGGATTTATAAGAAAGATGTAACTTTGGCTTCTGACAACCGCTGGGTTCGAGAAGTTGATTTCACTCCATCATGCTGCATCGGGCAATCCTCTTCTTTATGTTTGGAGCTTCCATTAAGGTGTGCACTTCCAGACCTAGGCAAGAGTTTCATTCACTGTATAGAGAATGAAGGACAGTTCGTGCTGAAGAGAGGTAACAGTTTCTCCGGAAGTTCAGCTATTGTTCCTATTCTGGCTCCGGCCCCGGGGATCGACTTGCCATACAAAATCCTGTTCAAGATAAATTCATTGGTTCAGCACGGTTGTATTCCCGGCCAAGCTCTTGATGTCGATTTTTATAATCTAGTGGATCCTACTAGAATAAGAATTGAATATATAGTGTGTGCCCTGGACGAACTGTTCAACTCCAAGGAGTGCTGCCATGAACCTGTAATGTGGCTTCTTAAGCAGTACATCATGTACAAGGCATGCAAGCGGCTTCCTCAGTCACCAGCTATATCTTTAGATGAAGGCTTTGTGTATGTGCACAGGGTTCTGATTACACCATCTAAAGTATACTTCTGTGGTCCAGAGGTAAATCTCTCCAATCGTGTTTTAAGAAATTATCCTGAAGATATCGACAATTTTCTTCGCGTTTCTTTTGTTGATGAGGACTTGGGGAAGATGCGGTCTGTAGATTTGTGTCCGCGGACGAGTTCTGCAGAAGAGGAAAGGAGAACTAGAGTTTATGAAAGGATACTTTCTACTCTAAGAGATGGGATAGTGATTGGTGATAAGAAGTTTGAGTTTCTAGCATATTCGTCAAGTCAGTTGCGAGAGAATTCTGCATGGATGTTTGCTTCTAGAAGGGGCCTTACTGCACAAGAAATTAGAGACTGGATGGGTGATTTTAGTCACATTAAAAATGTGGCTAAATATGCAGCCAGGCTTGGTCAGTCTTTCAGCTCTTCCAGGGAGACTTTTACTGTTGGATCAGATGAAATTGAAGTCATTCCTGATGTAGAAATTGAAAGAGGCGGAACCAGATACTGCTTCTCTGACGGAATTGGGAAGATATCTGCTGAATTTGCTGAAGGAGTGGCAAGAAAATGTGGGAAAAGTTCCACTCCATCTGCCTTTCAAATCCGCTATGGTGGCTACAAAGGTGTTGTGGCAGTCGATCCAACATTGTCAAAGAAGCTGTCATTGAGAAAGAGCATGTGCAAGTTCGAATCACGCAATACAAAGTTAGATGTCCTGGCATGTAGCAAGTACCAGCCTTGTTTTCTCAATCGTCAACTGGTCACCCTTTTGTCCACCCTTGGAGTTAAGGATCATGTTTTTGAGAAGAAGCAGAAACAAGCAATGAATCAGCTGGAAGGGATTCTAACTGATCCATTGAAAGCACAGGAGGCACTGGAATTGATGTTCCAAGGAGAGGCAACCAACATTTTAAAGGAAATGCTGATGTGTTATAAGCCAAATGCAGAGCCGTTTCTGTCATTGATGCTACAATCATTATGTGCATCAAAACTTGCAGAACTGCGAAGCAGAACACGAATTTTTGTTCCAAATGGAAGATCTCTGATGGGATGTCTAGATGAAACCGGGACATTGGAATATGGTCAGGTATTTGTGCAATGTTCTCACCATGCTATCTTCACTGGCAACACAACCTCAACTGCAAGCCAAGACAATTTTACTGTTGTGGGTAAAGTAGTTGTTGCTAAAAACCCGTGTTTACACCCTGGAGATGTGCGTGTTCTTATGGCGGTGGACGTGCCGGCGTTACGCCACATGGTGGATTGTGTTGTGTTCCCACAGAAAGGAAAGAGGCCTCATCCAAATGAATGCTCGGGCAGTGATTTAGATGGAGATGTTTACTTTGTTAGCTGGGATCGAGACCTGATTCCCCTGCAGAAAACTCAACCGATGAAGTATACCTCAGCACCAACTGAGGAATTGGATCATGATGTCACAATAGAGGAAGTTGAGGAGTCCTTTACCGACTACATAGTAAATGACAGTTTGGGCATCATTTCAAATGCACATCTTGTCTTTGCAGACAGAGAACCACAGAAGGCTATGAGTGATAAATGTATCAAACTCGCCAAGCTCCACTCCCATGCTGTCGACTCTCCTAAAACTGGTGTAATAGTGAAACTGCCGCCTAAAATGCGTGTCCACAAATACCCAGATTTCATGGAGAAGATTGACAGGCCAACCTACGAGTCCAAGCGTGTGATTGGGAAGCTTTTCCGACAGGTGAAAGATATCGAGCTAGGATCCCATTCACACTCTTTTAAGTCCTTCACTAAGGAAGTGGCTTGTAGGTTTTATGATCCTGACATGGAGGTAGATGGATTCGAAGATTACATCAATGATGCCATTAGTTACAAAAGGGAGTATGACTACAAGCTGGGAAACCTGATGGACTATTATGGTATCAAAACTGAAGCTGAAATACTGAGTGGAAACATCACAAATGTATCAAAATTCTTCAACAAGAGAAAGGACTTGGAGTCAATTAACTACGCTGTGAGGTCATTGAAGAATGAGGCAAGGGCACGGTTTATCGAGGAGCCAAATGGTGATGACCCATCAGATTTCGGAACTGATATCGGTAATGTGTATGCAGCAAAAGCCTCAGCATGGTACCATGTTACATATCATCATCGTTACTGGGGTTGCTACAACAAGGGTATGGCAAGAGACCATTTCCTGAGTTTTCCATGCAATTGCCATTATCAACTAGTCAGCATGGTCAAGAAAGTTTACTTGTATGGATTTCCCACTGTGGAGTCTCCAGAAGCGGTGACAAAATTTCTGGAGGAGTATACCGGAGAAGGAACTGTTCTCTCTGTGAATGTTCTTCGTCCAAAAGATGGCGCATCAAGATCATCTGCCACAGTTCAATTCACAACTGCAGAATGTGCTGAAATACTACTTCCATTAGCCGAAAAAAAAGGCCTGTGGTATGGAGAGTCTTATCTGAAAGCTAGAGAATGGAAGCGTGACATGGCACCGAGATCAGAAGTCTTGGAGGAACTTGTGACACTTCACTTTGGATGCAAGATATCTGGGGAGAAGTTTTCGGTGCTTTGGACAAAATCAGATGTTTCTGTGACATTTGGGATGGAACGGAAAAATGTGCACTTGTCTTTCTGCTATGATTGTGTTAAATACAAGCTTGAGCTCCCATCTGACACTATTTGCCGGATTGAGCTGCATTGTCCACGTGATCAGTTTACAAAGTTTCTTCTCATCCAGTTACGTGGTGCCCCTCGGATTTATAAGAAAGATGTAACTTTGGCTTCTGACAACCGCTGGGTTCGAGAAGTTGATTTCACTCCATCATGCTGCATCGGGCAATCCTCTTCTTTATGTTTGGAGCTTCCATTCAGGTGTGCACTTCCAGTCCTTCGCAAGAGTTTTGTTGACTATAAAGAGAATAAAGGACAGTTTGTGCTGAAGAGAGGTAACACTTTTTCCGGCAATTCAGCTCTTGTTCCTATTCTGGCTCCACCCCTAGGCATTGACTTGCCATACAGAATCTTGTTCAAGATAAATTCATTGGTTCAACACGGTTTTATTCCCGGGCAAGCTCTTGATGTCAAATTTTATAATCTAGTGGATCCTACTAGAATAAGAATTGAATATATACAGTATGCCCTGGACAGACTGTTTAATTCCAAGGAGTGCTGTTATGAACCTGTAAGGTGGCTTTTTAACATGTACAAGGCATGCAAGCGGATTCCCCAGTCACCAGCAATATCTTTAGATGAAGGCTTTGTGTATATACATAGGGTTCAGATTACACCATCTAAAGTATACTTCTGTGGTCCTGAGGTAAATCTCTCCAATCGTGTTTTACGAAATTATCCTGAAGATATCGACAATTTTCTTCGGGTTTCTTTTGTTGATGAGGACTTGGGAAAGATGCGGTCTGTAGATTTGTGTCCGCGGACAGAAGAGGAAAGGAGAACCAGTGTTTATGAAAGGATACTTTCTACTCTAAGGGATGGCATAGTGATTGGTGATAAGAAGTTTGAGTTTCTAGCATTTTCGTCGAGTCAGTTGCGAGAGAATTCTGCATGGATGTTTGCTTCCAGAAGGGGCCTTACTGCACAAGGAATTAGAGACTGGATGGGTGATTTTAGTCGCATTAAAAATGTGGCTAAATATGCAGCCAGGCTTGGTCAGTCTTTCAGCTCTTCCAGGGAGACTTTTACTGTTGGATCAGATGAAATTGAAGTCATTCCTGATGTAGAAAGTGAAAGAGGCGGAACCAAATATTGCTTCTCTGACGGAATTGGGAAGATATCTGCTGAATTTGCTGAACGAGTGGCAAGAAAATGTGGGAAAAGTTCTACTCCATCCGCCTTTCAAATCCGCTATGGTGGCTACAAAGGTGTTGTGGCAGTCGATCCAACATTGTCAAAGAAGCTGTCATTGAGAAAGAGCATGTGCAAGTTCGAATCACGCAATACAAAGTTAGATGTCCTGGCATGGAGCAAGTACCAGCCTTGTTTTCTCAATCGTCAACTGATCACCCTTTTGTCCACCCTTGGAGTTAAGGATCATGTTTTTGAGAAGAAGCAGAAACAAGCAATGAATCAGCTGGAAGGGATTCTAACTGATCCATTGAAAGCACAGGAGGCACTGGAATTGATGTTTAAAGGAGAGGCAAGCAACATTTTAAAGGAAATGCTGATGTGTTATAAGCCAAATGCAGAGCCGTTTCTCTCATTGATGCTACAATCATTATGTGCATCAAAACTTGCAGAACTGCGAAGCAGAACACGAATTTTTGTTCCAAATGGAAGATCTCTGATGGGATGTCTAGATGAAACCGGGACATTGGAATATGGTCAGGTATTTGTGCAATGTTCTCACCATGCTATCTTCACTGGCAAAACTACTTCAACTGCAAGCCAAGACAATTTTACTGTTGTGGGTAAAGTAGTGGTTGCTAAAAACCCGTGTTTACACCCTGGAGATGTGCGTGTTCTTATGGCTGTGGATGTGCCGGCGTTACACCACATGGTGGATTGTGTTGTGTTCCCCCAAAAAGGAAAGAGGCCTCATCCTAATGAATGCTCAGGCAGCGATTTAGATGGAGATGATTACTTTGTTAGCTGGGATGGTGACCTGATTCCACCGCGGCAAACTGAACCCATGAACTATACCCCAGCACCAACTGTGGAACTGGATCATAATGTTACAATGGAGGAAGTTGAGGAGTCTTTTACCAACTATATAATGAATTGCAGCTTGGGCATCATTTCAAATGCACATCTTGTCTTTGCAGACAGAAAACCAAAGAAGGCTATGACTGATGAATGTATTAAACTCGCCAAGCTCCACTCCCATGCTGTTGATTCTCCAAAAACTGGTGTACTAGTGAAAGTGCCGCATAGACTGCGTGTCCAAGAATACCCAGATTTCATGGAAAAGAGTGACAGGCAAACCTACGAATCCAAGAGTGTGATTGGGAAGCTTTTCCGACAGGTAAAAGATATTGACCTTGGATCACATTCACACCCTGTTAAGTCCTTCACTAGGGAAGTGGCTACGAGGTTTTATGATCCTGACATGGAGGTAGATGGATTCAAAGATTACATTAATGATGCCATCAGTCACAAAGGCGATTATGACTACAAGCTGGGAAACCTGATGGACTATTATGGTATCAAAACTGAAGCTGAAATACTCAGTGGAAACATCACCAATGTATCAAAGTTCTTCAACAAAAGAAAGGACTTGGAGTCGATCAACTACGCTGTGAGGTCATTGAAGAATGAGGCAAGGACACAGTTTATCGAGAATCCAAATAGTGATGATCCATCAGATTTCGGAACTGATATCGGTAATGTGTATGCAGCAAAAGCATCAGCATGGTACCATGTTACATATCATCATCGTTACTGGGGTTGCTACAACAAGGGGGTTGATTTGCCATATGATATCTTGTTTAAAATAAACTCGCTGGTTCAAATGGGTTGTCTATCTCTATCAGGGCCAACACTTGATAATAGGTTTTATAGGCTGGTGGATCCACGAAGAATAACTCGTTCCTGTATAGAGTGTGCCCTAGATAAATTATCTAATTTGAAAAAGAGCTGTTATGAACCTGCGGTGTGGCTTCTTGAGGAATATCGGAAGTACCTGACATCAAAGAAACCTCCAAAGCCGGCCCTTATCTCCTTAGATTCTGGTTTGGTATATGTACGGAGGGTTCAAATAACACCATCTAAAGTGTATTTTTCTGGTCCTGAGGTTAATGTCTCAAATCGCATACTACGCCAGTATTCCAGTGATATCGATAACTTTCTTCGTGTTTCATTTGTTGATGAGGAGATGGAAAAACTCTATTCAACAGATTTATCCCCCCGTACATCTACTAGGAAAACTCGCATCTACAACAGAGTTCTTTCTATTCTCAGAAACGGCATAGTAATTGGAGAAAAGAAATTTGAGTTTCTTGCATTCTCATCAAGTCAATTGCAAGATAATTCATTGTGGATGTTTTCTTCAGCCTCTAATGTTAGTGCTGATAAGATAAGAGCAGGGATGGGGGATTTTCGCAAGATAAGAAATGTGGCAAAGTATGCTGCCAGATTGGGTCAATCTTTTGGCTCTTCTACTGAAACTCTAAGTGTTGGCAGGAATGAGATTGAAGTTATTCCTGATGTAACAGTTAATTGGGGTGGAGACAGATATGTGTTCTCCGATGGGATTGGGAAAATATCAGCTGATTTTGCAAGGAGAGTTGCCTTCAAATGTGGCTATAAAGCGTTCACACCATCTGCATTTCAAATTCGATATGGTGGTTACAAAGGTGTTGTCGCTGTTGATCCAACCTCGTCAATGAAATTATCACTGAGAAAGAGCATGTCTAAGTATGATTCTGAAAACACAAAGCTAGATGTTCTAGCATGTAGCAAGTTTCAGCCTTGTTTTTTGAATCGTCAGGTGATAACTCTTCTGTCTACACTTGGAGTTCAAGATCATGTTTTCTTGAAAAAGCAAAGAGCAGCTGTACAACAACTTAATGCCATATTGACTGACCCATTAAAAGCAGGGGAGGCTCTTGATTTGATGTCTGCGGGTGAGAGTACAAACATCCTCAAGGAACTGCTGATGTGTGGTTATAAACCTGATGTTGAACCATTCCTTTCAATGATGCTCCAAACATTTCGGGCATCAAAGTTGTTGGAATTGAGGACCAAAACAAGAATCTTTATCCCAGAAGGAAGAGCAATGATGGGATGTCTAGACGAAACAAGAACCTTGGAATATGGGCAGGTGTTTGTGCAAATCTGTGGAAACAGACGAAGGCAGTTATTGGATGATTCATTCATGCATAGTGGAAGCTCATCAGGCAACTGTTTCATTATTGAGGGAAAGGTGGTTGTTGCAAAGAACCCATGTTTACACCCTGGTGATGTGCGTGTTTTAAGGGCTGTGAATGTGCCGGAGTTAGACCATATGGTGGACTGTGTGGAATTATGCAATGCTGCCTATTTGAATATTGTTTATTTAGCACAAGATAAATCAGTATTGACTGTTGCATTCCATTGGCCTCATCCAAATGAATGTTCTGGAAGTGATCTTGATGGAGATATTTACTTTGTTTGCTGGGACGCCGAGTTGATTCCTCGCAAGCAAATCCAACCTATGGATTATACCCCAGCACCAACTATAGAGATGGATCATGATGTCACAATTGAGGAAGTAGAAGAGCACTTTGTGAATTACATACTCAATGATAGTTTGGGGAGAATTGCCAATGCCCACACTGTTTTTGCTGACAGAGAGCGTGATAAAGCAATGAGCCGTCCGTGCATAGAGCTGGCGAAGCTACATTCAATTGCTGTAGACTTTCCAAAAACTGGCGTGCCAGCTGTGAGACCAGAGGAACTGTATGTCAAGGAATATCCAGATTTCATGGAGAAGACCGACAAAAGCACCTATCTCTCAAGCAATGTGATCGGACAGCTTTTTCGTGAGGTGAAGGACATTGCACCCTATGACAGCTGTATTACATCCTTCACTCATCAAGTGGCAACAAAATCCTATGACCCTGAAATGGAGGTTGATGGCTTTGAGGATTACCTTGAAGATGCTTTCTATTACAAAAACAATTATGATTACAAATTGGGAAACCTGTTGGATTACTATGGGATCAAGACAGAGGCTGAAATATTGAGTGGGGGTATTATGAGAATGTCAAAATCTTTCACCAAGGAGCGGGATGCAGACGCTATAAACAGGGCTGTGAGGTCACTGAGGAAGGAAGCTAGGACCTGGTTCGATGAGAAAGGAACTGGAATAGATTCTGGAGTTGATGATGTCTATGCAAAAGCTTCAGCTTGGTACCATGTCACATATCATCCCAATTATTTTGGTTTGTACAATGAGGGAATGAAACGTGACCATTTTATCAGCTTCCCGTGGTGTGTGTATGCCAAGCTGGTTCACATAAAAAAGGACAAAGTAAAGCAAGCTCCGCGCATATCATCTTTAGAAAGTCGGTTCAGGTACGGCGTTCATTTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CX9C

Protein Analysis

3022

Amino Acids

343.08

Weight (kDa)

8.0

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_RdRP1_2 PF26250 4 - 82 2.5e-13 RdRP1/2, RRM domain
PH_RDR2 PF24823 100 - 235 2.9e-29 RDR2 PH-like domain
RdRP_helical PF26252 253 - 326 2e-10 RNA dependent RNA polymerase, helical domain
RdRP PF05183 355 - 924 7.8e-197 RNA dependent RNA polymerase
RdRP_head PF26253 948 - 1086 5.1e-35 RdRP, head domain
RRM_RdRP1_2 PF26250 1095 - 1172 1.6e-12 RdRP1/2, RRM domain
PH_RDR2 PF24823 1188 - 1323 7.6e-30 RDR2 PH-like domain
RdRP_helical PF26252 1341 - 1421 3.1e-10 RNA dependent RNA polymerase, helical domain
RdRP PF05183 1440 - 2006 2.7e-197 RNA dependent RNA polymerase
RdRP_head PF26253 2030 - 2153 1.4e-32 RdRP, head domain
RdRP_helical PF26252 2150 - 2229 2.8e-09 RNA dependent RNA polymerase, helical domain
RdRP PF05183 2250 - 2840 3.8e-180 RNA dependent RNA polymerase
RdRP_head PF26253 2861 - 3005 5.3e-46 RdRP, head domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 7 cut(s) 534, 864, 1980, 3798, 4128, 5226, 7659
AarI CACCTGC 1 cut(s) 7801
Acc36I ACCTGC 2 cut(s) 6646, 7801
Acc65I GGTACC 3 cut(s) 3159, 6405, 8883
AccB1I GGYRCC 7 cut(s) 262, 518, 3159, 3526, 3782, 6405, 8883
AccB7I CCANNNNNTGG 8 cut(s) 125, 2305, 3389, 5551, 5897, 7999, 8185, 8399
AccBSI CCGCTC 1 cut(s) 8758
AccI GTMKAC 8 cut(s) 77, 1080, 2444, 2637, 3341, 4335, 7496, 8385
AccII CGCG 5 cut(s) 1158, 1213, 4468, 5668, 9019
AccIII TCCGGA 2 cut(s) 456, 731
AcoI YGGCCR 1 cut(s) 838
AcuI CTGAAG 9 cut(s) 731, 1155, 1617, 2979, 3995, 4410, 6225, 7023, 8859
AcvI CACGTG 1 cut(s) 3743
AcyI GRCGYC 1 cut(s) 8151
AdeI CACNNNGTG 3 cut(s) 2305, 5551, 8257
AflII CTTAAG 1 cut(s) 968
AflIII ACRYGT 1 cut(s) 4236
AhdI GACNNNNNGTC 3 cut(s) 3025, 5930, 6271
AhlI ACTAGT 2 cut(s) 3256, 5905
AjiI CACGTC 1 cut(s) 2284
AjuI GAANNNNNNNTTGG 6 cut(s) 4787, 4819, 5762, 5794, 8089, 8121
AleI CACNNNNGTG 1 cut(s) 7947
AloI GAACNNNNNNTCC 4 cut(s) 908, 940, 1916, 1948
Alw21I GWGCWC 7 cut(s) 438, 652, 1053, 3660, 3702, 3916, 8253
Alw44I GTGCAC 4 cut(s) 648, 1049, 3656, 3912
AlwNI CAGNNNCTG 2 cut(s) 1554, 8705
Ama87I CYCGRG 4 cut(s) 240, 769, 2359, 4100
Aor13HI TCCGGA 2 cut(s) 456, 731
ApaLI GTGCAC 4 cut(s) 648, 1049, 3656, 3912
AseI ATTAAT 1 cut(s) 6129
Asp700I GAANNNNTTC 8 cut(s) 1515, 1887, 2759, 4761, 5133, 6005, 7188, 8842
Asp718I GGTACC 3 cut(s) 3159, 6405, 8883
AspA2I CCTAGG 2 cut(s) 661, 4033
AspLEI GCGC 3 cut(s) 131, 3395, 9021
AsuC2I CCSGG 7 cut(s) 770, 771, 837, 2113, 4101, 4102, 5359
AsuII TTCGAA 3 cut(s) 1734, 2871, 4980
AvaI CYCGRG 4 cut(s) 240, 769, 2359, 4100
AvaII GGWCC 5 cut(s) 1091, 4346, 6776, 7731, 8811
AvrII CCTAGG 2 cut(s) 661, 4033
AxyI CCTNAGG 2 cut(s) 4350, 6780
BaeGI GKGCMC 9 cut(s) 523, 652, 913, 1053, 3073, 3660, 3787, 3916, 6598
BaeI ACNNNNGTAYC 4 cut(s) 2976, 3009, 6222, 6255
BamHI GGATCC 5 cut(s) 286, 874, 2789, 4138, 6559
BanI GGYRCC 7 cut(s) 262, 518, 3159, 3526, 3782, 6405, 8883
BanII GRGCYC 2 cut(s) 438, 3702
BbrPI CACGTG 1 cut(s) 3743
BbsI GAAGAC 1 cut(s) 8468
Bbv12I GWGCWC 7 cut(s) 438, 652, 1053, 3660, 3702, 3916, 8253
BbvCI CCTCAGC 2 cut(s) 2449, 3151
BceAI ACGGC 5 cut(s) 1981, 5227, 6970, 8328, 9067
BcgI CGANNNNNNTGC 6 cut(s) 4554, 4564, 4588, 4598, 8479, 8513
BciVI GTATCC 2 cut(s) 1254, 4500
BclI TGATCA 3 cut(s) 481, 3745, 5052
BcnI CCSGG 7 cut(s) 770, 771, 837, 2113, 4101, 4102, 5359
BcuI ACTAGT 2 cut(s) 3256, 5905
BfmI CTRYAG 7 cut(s) 1197, 1224, 2420, 3429, 4452, 8208, 8382
BfrI CTTAAG 1 cut(s) 968
BfuAI ACCTGC 2 cut(s) 6646, 7801
BfuI GTATCC 2 cut(s) 1254, 4500
BglII AGATCT 2 cut(s) 2084, 5330
BlnI CCTAGG 2 cut(s) 661, 4033
Bme18I GGWCC 5 cut(s) 1091, 4346, 6776, 7731, 8811
BmeRI GACNNNNNGTC 3 cut(s) 3025, 5930, 6271
BmeT110I CYCGRG 4 cut(s) 240, 769, 2359, 4100
BmgBI CACGTC 1 cut(s) 2284
BmrI ACTGGG 3 cut(s) 3196, 4258, 6442
BmuI ACTGGG 3 cut(s) 3196, 4258, 6442
BpiI GAAGAC 1 cut(s) 8468
BpmI CTGGAG 7 cut(s) 30, 89, 2274, 3294, 3353, 5520, 8868
Bpu10I CCTNAGC 3 cut(s) 2449, 3151, 5605
Bpu14I TTCGAA 3 cut(s) 1734, 2871, 4980
BpuEI CTTGAG 5 cut(s) 452, 3716, 6674, 7619, 8470
BpuMI CCSGG 7 cut(s) 770, 771, 837, 2113, 4101, 4102, 5359
Bsa29I ATCGAT 1 cut(s) 6828
BsaAI YACGTR 3 cut(s) 515, 3743, 3779
BsaHI GRCGYC 1 cut(s) 8151
BsaI GGTCTC 3 cut(s) 2400, 3210, 8410
BsaWI WCCGGW 4 cut(s) 80, 456, 731, 3344
BsaXI ACNNNNNCTCC 4 cut(s) 713, 743, 4477, 4507
Bse118I RCCGGY 3 cut(s) 2287, 5533, 6697
Bse21I CCTNAGG 2 cut(s) 4350, 6780
Bse3DI GCAATG 9 cut(s) 1875, 2150, 5121, 5396, 7773, 8026, 8343, 8497, 8526
BseAI TCCGGA 2 cut(s) 456, 731
BseCI ATCGAT 1 cut(s) 6828
BseMI GCAATG 9 cut(s) 1875, 2150, 5121, 5396, 7773, 8026, 8343, 8497, 8526
BseRI GAGGAG 7 cut(s) 86, 338, 2513, 3098, 3350, 5759, 6875
BseSI GKGCMC 9 cut(s) 523, 652, 913, 1053, 3073, 3660, 3787, 3916, 6598
BseYI CCCAGC 9 cut(s) 567, 2397, 2923, 3831, 5643, 5695, 6169, 8145, 8197
BsgI GTGCAG 2 cut(s) 1368, 4614
Bsh1236I CGCG 5 cut(s) 1158, 1213, 4468, 5668, 9019
BshNI GGYRCC 7 cut(s) 262, 518, 3159, 3526, 3782, 6405, 8883
BshVI ATCGAT 1 cut(s) 6828
BsiHKAI GWGCWC 7 cut(s) 438, 652, 1053, 3660, 3702, 3916, 8253
BsiHKCI CYCGRG 4 cut(s) 240, 769, 2359, 4100
BslFI GGGAC 3 cut(s) 2128, 5374, 8162
BsmFI GGGAC 3 cut(s) 2128, 5374, 8162
BsmI GAATGC 4 cut(s) 2360, 5606, 6992, 8078
Bso31I GGTCTC 3 cut(s) 2400, 3210, 8410
BsoBI CYCGRG 4 cut(s) 240, 769, 2359, 4100
Bsp119I TTCGAA 3 cut(s) 1734, 2871, 4980
Bsp13I TCCGGA 2 cut(s) 456, 731
Bsp1407I TGTACA 4 cut(s) 984, 4239, 7546, 8919
BspDI ATCGAT 1 cut(s) 6828
BspEI TCCGGA 2 cut(s) 456, 731
BspFNI CGCG 5 cut(s) 1158, 1213, 4468, 5668, 9019
BspHI TCATGA 2 cut(s) 2473, 8221
BspMAI CTGCAG 3 cut(s) 1228, 2424, 3433
BspMI ACCTGC 2 cut(s) 6646, 7801
BspQI GCTCTTC 5 cut(s) 1477, 4723, 7150, 7756, 8241
BspT104I TTCGAA 3 cut(s) 1734, 2871, 4980
BspT107I GGYRCC 7 cut(s) 262, 518, 3159, 3526, 3782, 6405, 8883
BspTI CTTAAG 1 cut(s) 968
BspTNI GGTCTC 3 cut(s) 2400, 3210, 8410
BsrBI CCGCTC 1 cut(s) 8758
BsrDI GCAATG 9 cut(s) 1875, 2150, 5121, 5396, 7773, 8026, 8343, 8497, 8526
BsrFI RCCGGY 3 cut(s) 2287, 5533, 6697
BsrGI TGTACA 4 cut(s) 984, 4239, 7546, 8919
BssAI RCCGGY 3 cut(s) 2287, 5533, 6697
BssNAI GTATAC 5 cut(s) 78, 1081, 2445, 3342, 4336
BssNI GRCGYC 1 cut(s) 8151
Bst1107I GTATAC 5 cut(s) 78, 1081, 2445, 3342, 4336
BstACI GRCGYC 1 cut(s) 8151
BstAFI CTTAAG 1 cut(s) 968
BstAPI GCANNNNNTGC 3 cut(s) 3437, 5926, 7115
BstAUI TGTACA 4 cut(s) 984, 4239, 7546, 8919
BstBAI YACGTR 3 cut(s) 515, 3743, 3779
BstBI TTCGAA 3 cut(s) 1734, 2871, 4980
BstDSI CCRYGG 4 cut(s) 1211, 4466, 5666, 8960
BstEII GGTNACC 2 cut(s) 1807, 5651
BstENI CCTNNNNNAGG 1 cut(s) 6064
BstFNI CGCG 5 cut(s) 1158, 1213, 4468, 5668, 9019
BstHHI GCGC 3 cut(s) 131, 3395, 9021
BstNSI RCATGY 8 cut(s) 996, 1726, 1770, 4240, 4251, 4972, 7402, 7446
BstPI GGTNACC 2 cut(s) 1807, 5651
BstSFI CTRYAG 7 cut(s) 1197, 1224, 2420, 3429, 4452, 8208, 8382
BstSLI GKGCMC 9 cut(s) 523, 652, 913, 1053, 3073, 3660, 3787, 3916, 6598
BstUI CGCG 5 cut(s) 1158, 1213, 4468, 5668, 9019
BstV2I GAAGAC 1 cut(s) 8468
BstX2I RGATCY 7 cut(s) 286, 874, 2084, 2789, 4138, 5330, 6559
BstXI CCANNNNNNTGG 2 cut(s) 515, 3779
BstYI RGATCY 7 cut(s) 286, 874, 2084, 2789, 4138, 5330, 6559
BstZ17I GTATAC 5 cut(s) 78, 1081, 2445, 3342, 4336
Bsu15I ATCGAT 1 cut(s) 6828
Bsu36I CCTNAGG 2 cut(s) 4350, 6780
BsuI GTATCC 2 cut(s) 1254, 4500
BsuTUI ATCGAT 1 cut(s) 6828
BtgI CCRYGG 4 cut(s) 1211, 4466, 5666, 8960
BtrI CACGTC 1 cut(s) 2284
BtsI GCAGTG 2 cut(s) 60, 2371
BveI ACCTGC 2 cut(s) 6646, 7801
CaiI CAGNNNCTG 2 cut(s) 1554, 8705
CciI TCATGA 2 cut(s) 2473, 8221
CfoI GCGC 3 cut(s) 131, 3395, 9021
Cfr10I RCCGGY 3 cut(s) 2287, 5533, 6697
Cfr42I CCGCGG 3 cut(s) 1214, 4469, 5669
Cfr9I CCCGGG 2 cut(s) 769, 4100
ClaI ATCGAT 1 cut(s) 6828
CseI GACGC 2 cut(s) 8159, 8777
CsiI ACCWGGT 1 cut(s) 8813
DraI TTTAAA 4 cut(s) 1959, 5182, 5205, 6481
DraIII CACNNNGTG 3 cut(s) 2305, 5551, 8257
DriI GACNNNNNGTC 3 cut(s) 3025, 5930, 6271
EaeI YGGCCR 1 cut(s) 838
Eam1105I GACNNNNNGTC 3 cut(s) 3025, 5930, 6271
EciI GGCGGA 3 cut(s) 1557, 4803, 4873
Ecl136II GAGCTC 2 cut(s) 436, 3700
Eco147I AGGCCT 3 cut(s) 2341, 3474, 5587
Eco24I GRGCYC 2 cut(s) 438, 3702
Eco31I GGTCTC 3 cut(s) 2400, 3210, 8410
Eco47I GGWCC 5 cut(s) 1091, 4346, 6776, 7731, 8811
Eco53kI GAGCTC 2 cut(s) 436, 3700
Eco57I CTGAAG 9 cut(s) 731, 1155, 1617, 2979, 3995, 4410, 6225, 7023, 8859
Eco72I CACGTG 1 cut(s) 3743
Eco81I CCTNAGG 2 cut(s) 4350, 6780
Eco88I CYCGRG 4 cut(s) 240, 769, 2359, 4100
Eco91I GGTNACC 2 cut(s) 1807, 5651
EcoICRI GAGCTC 2 cut(s) 436, 3700
EcoNI CCTNNNNNAGG 1 cut(s) 6064
EcoO109I RGGNCCY 3 cut(s) 1375, 4621, 8811
EcoO65I GGTNACC 2 cut(s) 1807, 5651
EcoRI GAATTC 2 cut(s) 1345, 4591
EcoT22I ATGCAT 1 cut(s) 7872
EcoT38I GRGCYC 2 cut(s) 438, 3702
FaqI GGGAC 3 cut(s) 2128, 5374, 8162
FauI CCCGC 2 cut(s) 7606, 8751
FauNDI CATATG 2 cut(s) 6466, 7995
FbaI TGATCA 3 cut(s) 481, 3745, 5052
FblI GTMKAC 8 cut(s) 77, 1080, 2444, 2637, 3341, 4335, 7496, 8385
FriOI GRGCYC 2 cut(s) 438, 3702
GlaI GCGC 3 cut(s) 130, 3394, 9020
GsaI CCCAGC 9 cut(s) 571, 2401, 2927, 3835, 5647, 5699, 6173, 8149, 8201
GsuI CTGGAG 7 cut(s) 30, 89, 2274, 3294, 3353, 5520, 8868
HgaI GACGC 2 cut(s) 8159, 8777
HhaI GCGC 3 cut(s) 131, 3395, 9021
Hin1I GRCGYC 1 cut(s) 8151
Hin6I GCGC 3 cut(s) 129, 3393, 9019
HinP1I GCGC 3 cut(s) 129, 3393, 9019
HincII GTYRAC 4 cut(s) 1802, 2638, 3943, 5048
HindII GTYRAC 4 cut(s) 1802, 2638, 3943, 5048
HindIII AAGCTT 5 cut(s) 428, 2756, 3692, 6002, 8871
Hpy99I CGWCG 1 cut(s) 4576
HpyCH4IV ACGT 5 cut(s) 514, 2283, 3742, 3778, 8938
HpySE526I ACGT 5 cut(s) 514, 2283, 3742, 3778, 8938
Hsp92I GRCGYC 1 cut(s) 8151
HspAI GCGC 3 cut(s) 129, 3393, 9019
Kpn2I TCCGGA 2 cut(s) 456, 731
KpnI GGTACC 3 cut(s) 3163, 6409, 8887
KroI GCCGGC 3 cut(s) 2287, 5533, 6697
KroNI GCCGGC 3 cut(s) 2289, 5535, 6699
Ksp22I TGATCA 3 cut(s) 481, 3745, 5052
KspI CCGCGG 3 cut(s) 1214, 4469, 5669
LguI GCTCTTC 5 cut(s) 1477, 4723, 7150, 7756, 8241
MabI ACCWGGT 1 cut(s) 8813
MaeII ACGT 5 cut(s) 514, 2283, 3742, 3778, 8938
MbiI CCGCTC 1 cut(s) 8758
MfeI CAATTG 4 cut(s) 3241, 7007, 8232, 8376
MflI RGATCY 7 cut(s) 286, 874, 2084, 2789, 4138, 5330, 6559
Mph1103I ATGCAT 1 cut(s) 7872
MroI TCCGGA 2 cut(s) 456, 731
MroNI GCCGGC 3 cut(s) 2287, 5533, 6697
MroXI GAANNNNTTC 8 cut(s) 1515, 1887, 2759, 4761, 5133, 6005, 7188, 8842
MslI CAYNNNNRTG 9 cut(s) 643, 2349, 2628, 3907, 5595, 5874, 6400, 7947, 8097
MspCI CTTAAG 1 cut(s) 968
MunI CAATTG 4 cut(s) 3241, 7007, 8232, 8376
Mva1269I GAATGC 4 cut(s) 2360, 5606, 6992, 8078
MvnI CGCG 5 cut(s) 1158, 1213, 4468, 5668, 9019
NaeI GCCGGC 3 cut(s) 2289, 5535, 6699
NciI CCSGG 7 cut(s) 770, 771, 837, 2113, 4101, 4102, 5359
NdeI CATATG 2 cut(s) 6466, 7995
NgoMIV GCCGGC 3 cut(s) 2287, 5533, 6697
NmeAIII GCCGAG 1 cut(s) 8179
NsiI ATGCAT 1 cut(s) 7872
NspI RCATGY 8 cut(s) 996, 1726, 1770, 4240, 4251, 4972, 7402, 7446
NspV TTCGAA 3 cut(s) 1734, 2871, 4980
OliI CACNNNNGTG 1 cut(s) 7947
PaeI GCATGC 2 cut(s) 996, 4251
PaeR7I CTCGAG 1 cut(s) 240
PagI TCATGA 2 cut(s) 2473, 8221
PaqCI CACCTGC 1 cut(s) 7801
PceI AGGCCT 3 cut(s) 2341, 3474, 5587
PciI ACATGT 1 cut(s) 4236
PciSI GCTCTTC 5 cut(s) 1477, 4723, 7150, 7756, 8241
PcsI WCGNNNNNNNCGW 1 cut(s) 4375
PctI GAATGC 4 cut(s) 2360, 5606, 6992, 8078
PdiI GCCGGC 3 cut(s) 2289, 5535, 6699
PdmI GAANNNNTTC 8 cut(s) 1515, 1887, 2759, 4761, 5133, 6005, 7188, 8842
PflMI CCANNNNNTGG 8 cut(s) 125, 2305, 3389, 5551, 5897, 7999, 8185, 8399
PmaCI CACGTG 1 cut(s) 3743
PmlI CACGTG 1 cut(s) 3743
Ppu21I YACGTR 3 cut(s) 515, 3743, 3779
PpuMI RGGWCCY 1 cut(s) 8811
PscI ACATGT 1 cut(s) 4236
PshBI ATTAAT 1 cut(s) 6129
PsiI TTATAA 7 cut(s) 534, 864, 1980, 3798, 4128, 5226, 7659
Psp124BI GAGCTC 2 cut(s) 438, 3702
Psp5II RGGWCCY 1 cut(s) 8811
PspCI CACGTG 1 cut(s) 3743
PspEI GGTNACC 2 cut(s) 1807, 5651
PspFI CCCAGC 9 cut(s) 567, 2397, 2923, 3831, 5643, 5695, 6169, 8145, 8197
PspPPI RGGWCCY 1 cut(s) 8811
PsrI GAACNNNNNNTAC 2 cut(s) 6726, 6758
PstI CTGCAG 3 cut(s) 1228, 2424, 3433
PstNI CAGNNNCTG 2 cut(s) 1554, 8705
PsuI RGATCY 7 cut(s) 286, 874, 2084, 2789, 4138, 5330, 6559
PvuII CAGCTG 6 cut(s) 1879, 5125, 7259, 7544, 8411, 8544
RseI CAYNNNNRTG 9 cut(s) 643, 2349, 2628, 3907, 5595, 5874, 6400, 7947, 8097
SacI GAGCTC 2 cut(s) 438, 3702
SacII CCGCGG 3 cut(s) 1214, 4469, 5669
SalI GTCGAC 1 cut(s) 2636
SapI GCTCTTC 5 cut(s) 1477, 4723, 7150, 7756, 8241
SexAI ACCWGGT 1 cut(s) 8813
SfcI CTRYAG 7 cut(s) 1197, 1224, 2420, 3429, 4452, 8208, 8382
Sfr274I CTCGAG 1 cut(s) 240
Sfr303I CCGCGG 3 cut(s) 1214, 4469, 5669
SfuI TTCGAA 3 cut(s) 1734, 2871, 4980
SgrBI CCGCGG 3 cut(s) 1214, 4469, 5669
SinI GGWCC 5 cut(s) 1091, 4346, 6776, 7731, 8811
SlaI CTCGAG 1 cut(s) 240
SmaI CCCGGG 2 cut(s) 771, 4102
SmiMI CAYNNNNRTG 9 cut(s) 643, 2349, 2628, 3907, 5595, 5874, 6400, 7947, 8097
SmlI CTYRAG 7 cut(s) 240, 431, 968, 3695, 6653, 7634, 8485
SmoI CTYRAG 7 cut(s) 240, 431, 968, 3695, 6653, 7634, 8485
SpeI ACTAGT 2 cut(s) 3256, 5905
SphI GCATGC 2 cut(s) 996, 4251
SseBI AGGCCT 3 cut(s) 2341, 3474, 5587
SspI AATATT 3 cut(s) 4799, 8038, 8712
SstI GAGCTC 2 cut(s) 438, 3702
StuI AGGCCT 3 cut(s) 2341, 3474, 5587
TaiI ACGT 5 cut(s) 517, 2286, 3745, 3781, 8941
TaqII GACCGA 1 cut(s) 8480
TatI WGTACW 7 cut(s) 975, 984, 4239, 5902, 7546, 7622, 8919
TauI GCSGC 4 cut(s) 1003, 2674, 5671, 5920
TspGWI ACGGA 6 cut(s) 234, 1581, 3661, 4827, 6751, 8337
TspMI CCCGGG 2 cut(s) 769, 4100
Van91I CCANNNNNTGG 8 cut(s) 125, 2305, 3389, 5551, 5897, 7999, 8185, 8399
Vha464I CTTAAG 1 cut(s) 968
VneI GTGCAC 4 cut(s) 648, 1049, 3656, 3912
VpaK11BI GGWCC 5 cut(s) 1091, 4346, 6776, 7731, 8811
VspI ATTAAT 1 cut(s) 6129
XagI CCTNNNNNAGG 1 cut(s) 6064
XbaI TCTAGA 4 cut(s) 1367, 2101, 5347, 7780
XceI RCATGY 8 cut(s) 996, 1726, 1770, 4240, 4251, 4972, 7402, 7446
XhoI CTCGAG 1 cut(s) 240
XmaI CCCGGG 2 cut(s) 769, 4100
XmaJI CCTAGG 2 cut(s) 661, 4033
XmiI GTMKAC 8 cut(s) 77, 1080, 2444, 2637, 3341, 4335, 7496, 8385
XmnI GAANNNNTTC 8 cut(s) 1515, 1887, 2759, 4761, 5133, 6005, 7188, 8842
Zsp2I ATGCAT 1 cut(s) 7872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.