Rorug05G0496900

CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003131
Physical Location & Seq
Reverse (-)
67880701 .. 67881652
952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0496900.1

Sequence Viewer

Length: 594 bp
ATGGCTTCGTCAATCTCAATCGCTCTCAGAAGGGCCTCATCCCCAAGCCTCTTCTCCAAGCTCTTCAACCCTCTTCGCTCTGTTTCAGTAGCTCCCTCTGTTTCTCGCTCCTTCAACACCAACGCCCAGAGGACCAGCTACGACGACGATGACCGGAGCGTCTCCGTCGACCGCACCACCACCAGCTCTCCCTCTCGCCGCCGTGACCCTATAGATGTGTTTGATCCATTTTACGATGAGTCTCGGAGTCTTGCAAGAAGTCTGAACCAGGTGCCAAGAAGTCTGAGCCAGGTCCTTAACTTGATGGACCAATTCATGGACAACCCATACATGGCTGCGTCTCGAGGAGGCTGGACAAGGGGGGACGTGAAGGTGTCAGTGGAGCAGAACACACTGACTGTGAGAGGAGAAGGAAAGGACCCTGAGGATGAAGAAGAAGGAGGGAGGAGATTCTCTAGCCGATTGGATCTGCCTCCTAACCTTTATGTGCTCGATTCGATCAAGGCTGAAATGAAGAATGGGGTTCTCAAGGTGGTGGTTCCTAAGGTGAAAGAGGAGGAGAAGAAGAATGTGTATGAGGTGAAGATTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CX9C

Protein Analysis

197

Amino Acids

22.13

Weight (kDa)

7.88

Isoelectric Point (pI)

68.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 119 - 196 1.6e-13 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 271
AccB7I CCANNNNNTGG 1 cut(s) 316
AccI GTMKAC 1 cut(s) 168
AciI CCGC 2 cut(s) 172, 199
AclWI GGATC 2 cut(s) 218, 474
AfiI CCNNNNNNNGG 2 cut(s) 316, 331
AgsI TTSAA 2 cut(s) 67, 115
AjiI CACGTC 1 cut(s) 367
AjnI CCWGG 2 cut(s) 267, 288
AluBI AGCT 4 cut(s) 61, 92, 138, 186
AluI AGCT 4 cut(s) 61, 92, 138, 186
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 3 cut(s) 166, 246, 345
AlwI GGATC 2 cut(s) 218, 474
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 335
AspS9I GGNCC 5 cut(s) 33, 132, 292, 307, 418
AsuHPI GGTGA 2 cut(s) 559, 592
AvaI CYCGRG 1 cut(s) 342
AvaII GGWCC 4 cut(s) 132, 292, 307, 418
AxyI CCTNAGG 2 cut(s) 423, 543
BanI GGYRCC 1 cut(s) 271
Bbv12I GWGCWC 1 cut(s) 492
BbvI GCAGC 1 cut(s) 322
BccI CCATC 1 cut(s) 298
BceAI ACGGC 1 cut(s) 186
BciT130I CCWGG 2 cut(s) 269, 290
BcoDI GTCTC 3 cut(s) 166, 246, 345
BfaI CTAG 1 cut(s) 456
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 2 cut(s) 199, 336
BlsI GCNGC 2 cut(s) 200, 337
Bme1390I CCNGG 2 cut(s) 269, 290
Bme18I GGWCC 4 cut(s) 132, 292, 307, 418
BmeT110I CYCGRG 1 cut(s) 342
BmgBI CACGTC 1 cut(s) 367
BmgT120I GGNCC 5 cut(s) 33, 132, 292, 307, 418
BmiI GGNNCC 3 cut(s) 273, 420, 540
BmrFI CCNGG 2 cut(s) 269, 290
BpuEI CTTGAG 1 cut(s) 512
BsaWI WCCGGW 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 331
Bse21I CCTNAGG 2 cut(s) 423, 543
BseBI CCWGG 2 cut(s) 269, 290
BseGI GGATG 2 cut(s) 38, 433
BseLI CCNNNNNNNGG 2 cut(s) 316, 331
BseMII CTCAG 3 cut(s) 40, 275, 414
BseRI GAGGAG 5 cut(s) 360, 420, 460, 569, 572
BseXI GCAGC 1 cut(s) 322
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 1 cut(s) 35
BshNI GGYRCC 1 cut(s) 271
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 492
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 1 cut(s) 154
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 2 cut(s) 316, 331
BsmAI GTCTC 3 cut(s) 166, 246, 345
BsmBI CGTCTC 2 cut(s) 166, 345
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 1 cut(s) 35
BsoBI CYCGRG 1 cut(s) 342
Bsp1286I GDGCHC 1 cut(s) 492
Bsp143I GATC 3 cut(s) 223, 466, 498
BspACI CCGC 2 cut(s) 172, 199
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 3 cut(s) 39, 276, 415
BspLI GGNNCC 3 cut(s) 273, 420, 540
BspPI GGATC 2 cut(s) 218, 474
BspQI GCTCTTC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 271
BssMI GATC 3 cut(s) 223, 466, 498
Bst2UI CCWGG 2 cut(s) 269, 290
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 3 cut(s) 56, 68, 78
BstDEI CTNAG 4 cut(s) 26, 284, 423, 543
BstF5I GGATG 2 cut(s) 38, 433
BstKTI GATC 3 cut(s) 226, 469, 501
BstMAI GTCTC 3 cut(s) 166, 246, 345
BstMBI GATC 3 cut(s) 223, 466, 498
BstMCI CGRYCG 1 cut(s) 172
BstNI CCWGG 2 cut(s) 269, 290
BstSCI CCNGG 2 cut(s) 267, 288
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 322
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
Bsu36I CCTNAGG 2 cut(s) 423, 543
BsuRI GGCC 1 cut(s) 35
BtrI CACGTC 1 cut(s) 367
BtsCI GGATG 2 cut(s) 38, 433
BtsIMutI CAGTG 2 cut(s) 384, 392
Cfr13I GGNCC 5 cut(s) 33, 132, 292, 307, 418
CseI GACGC 2 cut(s) 148, 327
CsiI ACCWGGT 1 cut(s) 267
CviAII CATG 2 cut(s) 316, 331
DdeI CTNAG 4 cut(s) 26, 284, 423, 543
DpnI GATC 3 cut(s) 225, 468, 500
DpnII GATC 3 cut(s) 223, 466, 498
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
Eam1104I CTCTTC 3 cut(s) 56, 68, 78
EarI CTCTTC 3 cut(s) 56, 68, 78
Eco47I GGWCC 4 cut(s) 132, 292, 307, 418
Eco81I CCTNAGG 2 cut(s) 423, 543
Eco88I CYCGRG 1 cut(s) 342
EcoO109I RGGNCCY 3 cut(s) 33, 292, 418
EcoRII CCWGG 2 cut(s) 267, 288
Esp3I CGTCTC 2 cut(s) 166, 345
FaeI CATG 2 cut(s) 319, 334
FaiI YATR 6 cut(s) 212, 317, 328, 332, 486, 576
FaqI GGGAC 1 cut(s) 377
FatI CATG 2 cut(s) 315, 330
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 2 cut(s) 199, 336
FokI GGATG 2 cut(s) 25, 440
Fsp4HI GCNGC 2 cut(s) 199, 336
FspBI CTAG 1 cut(s) 456
GluI GCNGC 2 cut(s) 199, 336
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 154
HgaI GACGC 2 cut(s) 148, 327
Hin1II CATG 2 cut(s) 319, 334
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 4 cut(s) 239, 247, 450, 494
HpaII CCGG 1 cut(s) 154
HphI GGTGA 2 cut(s) 559, 592
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 4 cut(s) 29, 246, 264, 285
Hpy188III TCNNGA 1 cut(s) 342
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 3 cut(s) 146, 149, 170
HpyAV CCTTC 5 cut(s) 24, 121, 364, 404, 431
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 1 cut(s) 254
HpyF3I CTNAG 4 cut(s) 26, 284, 423, 543
HpySE526I ACGT 1 cut(s) 366
Hsp92II CATG 2 cut(s) 319, 334
Kzo9I GATC 3 cut(s) 223, 466, 498
LguI GCTCTTC 1 cut(s) 68
LmnI GCTCC 4 cut(s) 97, 113, 156, 382
Lsp1109I GCAGC 1 cut(s) 322
MabI ACCWGGT 1 cut(s) 267
MaeI CTAG 1 cut(s) 456
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 1 cut(s) 203
MalI GATC 3 cut(s) 225, 468, 500
MboI GATC 3 cut(s) 223, 466, 498
MboII GAAGA 8 cut(s) 43, 55, 65, 443, 446, 526, 574, 577
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 1 cut(s) 492
MluCI AATT 1 cut(s) 311
MlyI GAGTC 2 cut(s) 248, 256
MseI TTAA 1 cut(s) 297
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 2 cut(s) 269, 290
MvaI CCWGG 2 cut(s) 269, 290
NdeII GATC 3 cut(s) 223, 466, 498
NlaIII CATG 2 cut(s) 319, 334
NlaIV GGNNCC 3 cut(s) 273, 420, 540
NmuCI GTSAC 1 cut(s) 203
PaeR7I CTCGAG 1 cut(s) 342
PciSI GCTCTTC 1 cut(s) 68
PfeI GAWTC 2 cut(s) 450, 494
PflMI CCANNNNNTGG 1 cut(s) 316
PkrI GCNGC 2 cut(s) 200, 337
PleI GAGTC 2 cut(s) 247, 255
PpsI GAGTC 2 cut(s) 247, 255
PpuMI RGGWCCY 2 cut(s) 292, 418
Psp5II RGGWCCY 2 cut(s) 292, 418
Psp6I CCWGG 2 cut(s) 267, 288
PspGI CCWGG 2 cut(s) 267, 288
PspN4I GGNNCC 3 cut(s) 273, 420, 540
PspPI GGNCC 5 cut(s) 33, 132, 292, 307, 418
PspPPI RGGWCCY 2 cut(s) 292, 418
PsuI RGATCY 1 cut(s) 466
SalI GTCGAC 1 cut(s) 167
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 2 cut(s) 199, 336
Sau3AI GATC 3 cut(s) 223, 466, 498
Sau96I GGNCC 5 cut(s) 33, 132, 292, 307, 418
SchI GAGTC 2 cut(s) 248, 256
ScrFI CCNGG 2 cut(s) 269, 290
SduI GDGCHC 1 cut(s) 492
SexAI ACCWGGT 1 cut(s) 267
SfcI CTRYAG 1 cut(s) 210
Sfr274I CTCGAG 1 cut(s) 342
SinI GGWCC 4 cut(s) 132, 292, 307, 418
SlaI CTCGAG 1 cut(s) 342
SmlI CTYRAG 2 cut(s) 342, 527
SmoI CTYRAG 2 cut(s) 342, 527
Sse9I AATT 1 cut(s) 311
SsiI CCGC 2 cut(s) 172, 199
SspMI CTAG 1 cut(s) 456
StyD4I CCNGG 2 cut(s) 267, 288
TaaI ACNGT 1 cut(s) 400
TaiI ACGT 1 cut(s) 369
TaqI TCGA 4 cut(s) 168, 343, 492, 497
TasI AATT 1 cut(s) 311
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 2 cut(s) 450, 494
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 2 cut(s) 384, 399
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 3 cut(s) 304, 444, 527
TspGWI ACGGA 1 cut(s) 154
TspRI CASTG 2 cut(s) 384, 399
Van91I CCANNNNNTGG 1 cut(s) 316
VpaK11BI GGWCC 4 cut(s) 132, 292, 307, 418
XhoI CTCGAG 1 cut(s) 342
XmiI GTMKAC 1 cut(s) 168
XspI CTAG 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.