Rorug05G0497100

CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003131
Physical Location & Seq
Reverse (-)
67904047 .. 67905436
1390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0497100.1

Sequence Viewer

Length: 468 bp
ATGGCATCTCTATATCTTTCAACAGATGATTGGTCTGACAAAGTCAACCTTTGGCACGGCTTTTGTTCAATGTCTAGACATCAACACTCGGATGAAATATATACCAGCATCCTACTATGGGAAACCCTGACTGGAAGGGAGCATCTGCTTTTTTATGGAAGACTTGAGAACCTCAAAGGTTCTGGATTAAGACAAGCAGTGGAAGAATCTTTGAAAAGTGTCAATCTGTTTCATGGTGGGGTTGCAAACAAAAGAGCTGGAAAGTATAGTGGAGGTATGAAGAGAAGGCTTAGCATCGCAATTTCACTGATAGATAGCCACAGACAGCGGATAATAAGTTGGATTGATGGCACAAGACAGCTATCAGCTACATTTGACTTCACAACCAAGGGAGTTATTCTGGAAGCTGTCAAGGGACAATTATGGAGATTATGTGATCCCCAAGGGAAGCCACCAGGTGTAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CX9C

Protein Analysis

155

Amino Acids

17.5

Weight (kDa)

9.39

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 328
AclWI GGATC 1 cut(s) 431
AdeI CACNNNGTG 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 3 cut(s) 21, 69, 214
AjnI CCWGG 1 cut(s) 454
AluBI AGCT 4 cut(s) 257, 361, 368, 407
AluI AGCT 4 cut(s) 257, 361, 368, 407
AlwI GGATC 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 166
BccI CCATC 1 cut(s) 341
BceAI ACGGC 1 cut(s) 73
BciT130I CCWGG 1 cut(s) 456
BfaI CTAG 1 cut(s) 75
BlpI GCTNAGC 1 cut(s) 290
Bme1390I CCNGG 1 cut(s) 456
BmrFI CCNGG 1 cut(s) 456
BmsI GCATC 4 cut(s) 14, 117, 151, 303
BpiI GAAGAC 1 cut(s) 166
Bpu1102I GCTNAGC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 185
BsaJI CCNNGG 2 cut(s) 387, 442
BsaXI ACNNNNNCTCC 2 cut(s) 418, 448
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 456
BseDI CCNNGG 2 cut(s) 387, 442
BseGI GGATG 2 cut(s) 97, 108
BseLI CCNNNNNNNGG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 136
BslFI GGGAC 1 cut(s) 429
BslI CCNNNNNNNGG 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 429
Bsp143I GATC 1 cut(s) 436
Bsp1720I GCTNAGC 1 cut(s) 290
BspACI CCGC 1 cut(s) 328
BspPI GGATC 1 cut(s) 431
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 2 cut(s) 387, 442
BssMI GATC 1 cut(s) 436
BssT1I CCWWGG 2 cut(s) 387, 442
Bst2UI CCWGG 1 cut(s) 456
Bst6I CTCTTC 1 cut(s) 275
BstDEI CTNAG 1 cut(s) 290
BstF5I GGATG 2 cut(s) 97, 108
BstKTI GATC 1 cut(s) 439
BstMBI GATC 1 cut(s) 436
BstNI CCWGG 1 cut(s) 456
BstSCI CCNGG 1 cut(s) 454
BstV2I GAAGAC 1 cut(s) 166
BtgZI GCGATG 1 cut(s) 280
BtsCI GGATG 2 cut(s) 97, 108
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 2 cut(s) 204, 305
CsiI ACCWGGT 1 cut(s) 454
CviAII CATG 1 cut(s) 233
CviJI RGCY 8 cut(s) 60, 257, 289, 318, 361, 368, 407, 451
CviKI_1 RGCY 8 cut(s) 60, 257, 289, 318, 361, 368, 407, 451
DdeI CTNAG 1 cut(s) 290
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
DraIII CACNNNGTG 1 cut(s) 458
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
Eco130I CCWWGG 2 cut(s) 387, 442
EcoRII CCWGG 1 cut(s) 454
EcoT14I CCWWGG 2 cut(s) 387, 442
ErhI CCWWGG 2 cut(s) 387, 442
FaeI CATG 1 cut(s) 236
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FaqI GGGAC 1 cut(s) 429
FatI CATG 1 cut(s) 232
FokI GGATG 2 cut(s) 95, 104
FspBI CTAG 1 cut(s) 75
Hin1II CATG 1 cut(s) 236
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 2 cut(s) 37, 91
Hpy188III TCNNGA 3 cut(s) 75, 183, 401
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 2 cut(s) 129, 279
HpyCH4V TGCA 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 290
Hsp92II CATG 1 cut(s) 236
Kzo9I GATC 1 cut(s) 436
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 7 cut(s) 117, 118, 140, 168, 243, 386, 441
LweI GCATC 4 cut(s) 14, 117, 151, 303
MabI ACCWGGT 1 cut(s) 454
MaeI CTAG 1 cut(s) 75
MalI GATC 1 cut(s) 438
MboI GATC 1 cut(s) 436
MboII GAAGA 3 cut(s) 171, 215, 292
MluCI AATT 2 cut(s) 300, 419
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 2 cut(s) 182, 266
MseI TTAA 1 cut(s) 188
MslI CAYNNNNRTG 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 328
MspR9I CCNGG 1 cut(s) 456
MvaI CCWGG 1 cut(s) 456
NdeII GATC 1 cut(s) 436
NlaIII CATG 1 cut(s) 236
PfeI GAWTC 1 cut(s) 206
PflFI GACNNNGTC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 454
PspGI CCWGG 1 cut(s) 454
PsyI GACNNNGTC 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 90
SaqAI TTAA 1 cut(s) 188
Sau3AI GATC 1 cut(s) 436
ScrFI CCNGG 1 cut(s) 456
SetI ASST 9 cut(s) 51, 174, 181, 259, 277, 363, 370, 409, 460
SexAI ACCWGGT 1 cut(s) 454
SfaNI GCATC 4 cut(s) 14, 117, 151, 303
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 2 cut(s) 300, 419
SsiI CCGC 1 cut(s) 328
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 454
StyI CCWWGG 2 cut(s) 387, 442
TasI AATT 2 cut(s) 300, 419
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TscAI CASTG 2 cut(s) 204, 312
TspDTI ATGAA 3 cut(s) 108, 221, 293
TspRI CASTG 2 cut(s) 204, 312
Tth111I GACNNNGTC 1 cut(s) 41
XbaI TCTAGA 1 cut(s) 74
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.