Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005621

Physical Location & Seq

Genomic Coordinates Reverse (-)

5445944 .. 5448191

Gene Structure 2248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G080000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGACATCTTTCAGTGGATTAGGTATTGGTTTGAGCCTAGTTTTCGGGTGCCTCCTCTTGGCACTTGTTGCAGAGCTTTACTACTTGCTATGGTGGAAGAAGAGAATCACCAACAGAGAGATTGAAGAAGATTACAGCAACCATGCAAAGGAGCTCTTTCAATTTAGTTGCTGGAAAAAACCCTCTTCTTTGCAGACCAACAGTAACTCTCAGGAGAATGTTAGAGAACCAGATGCCAATCATAGCAGTAGTGAATCAGATTTAGAGCTGGGGTCTAGCAAGGATTTGCTGCTCAAGCTCAATGGAGAAGAGAATGTGGAAATATCAGAGCTCATGAGGCTGCATAATCTTGCTGGCCCACCTAGATTTCTCTTCACAATCAACGAGGAGACAAAGGAGGATTTGGAATCTGAAGATGGGAAATCTAGAGGTGATAGAAGTAGAAAAGGGTCAAGAACAAGAAGCTTGAGTGATCTTATTTTGTCTGTAGACACCCCATACCTTTCCCCTTTGCCCTCCCCATCTTTAAAGTCTTCACCTTTGAGCTCTTTGGACTCTTACAAACACCATGGATTCAACCCTCTCTTTGAATCATCAACAGAAGCTGAGCTGAGCAGGTTGAGATCTTCTCCCCCTCCAAAGTTCAAGTTTTTAAGGGATGCAGAGGAGAAATTGTTCAGAAGACTGATGGAAGAAGCTGAGAAAAGGGCAGCTAAAAATTGTGGGTCTGCTCAGGATTTTGGGGTTAACGCTACACCCAATTCAACAATGGCAACAGAAGAGAAAGATGGATCTTTTATAAGACTGGTTGTTGGTAAGAACAAGGAAAACCAGAGAGAGCATCATCACCAAAATCTACCACAAAATCCTCCAAGCTCTTCCAAGGTACTTCCACTGGCTTCTTCTCCTACAATGTTCAAATCCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

34.72

Weight (kDa)

6.28

Isoelectric Point (pI)

60.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59350 AT5G59350 AT5G59350
fragaria_vesca	FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750
malus_domestica	MD00G1137200.v1.1 MD11G1111600.v1.1
prunus_persica	Prupe.6G080000_v2.0.a1 Prupe.6G080000_v2.0.a1
pyrus_communis	pycom03g07910 pycom11g09220 pycom16g22780
rosa_chinensis	RchiOBHm_Chr5g0063921
rosa_laevigata	RLG00000035689
rosa_multiflora	Rmu_sc0000552.1_g000025
rosa_roxburghii	Rroxscaffold_1G00016850
rosa_rugosa	Rorug05G0361100 Rorug05G0361100 Rorug05G0361100
rosa_samantha	Rh5AG419600 Rh5BG435500 Rh5CG458600 Rh5DG448600
rosa_wichuraiana	Rw5G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	800
Acc36I	ACCTGC	1 cut(s)	606
AccB1I	GGYRCC	1 cut(s)	48
AccI	GTMKAC	1 cut(s)	489
AclWI	GGATC	1 cut(s)	799
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	1 cut(s)	888
AfiI	CCNNNNNNNGG	2 cut(s)	58, 148
AgsI	TTSAA	7 cut(s)	125, 161, 577, 590, 646, 765, 919
AloI	GAACNNNNNNTCC	2 cut(s)	659, 691
Alw21I	GWGCWC	3 cut(s)	156, 333, 548
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	1 cut(s)	799
AlwNI	CAGNNNCTG	1 cut(s)	605
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	3 cut(s)	289, 340, 710
Asp700I	GAANNNNTTC	1 cut(s)	674
AspS9I	GGNCC	1 cut(s)	356
AsuHPI	GGTGA	4 cut(s)	100, 443, 528, 839
BanI	GGYRCC	1 cut(s)	48
BanII	GRGCYC	3 cut(s)	156, 333, 548
BbsI	GAAGAC	2 cut(s)	525, 688
Bbv12I	GWGCWC	3 cut(s)	156, 333, 548
BbvI	GCAGC	3 cut(s)	276, 327, 722
BccI	CCATC	4 cut(s)	410, 529, 682, 782
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	4 cut(s)	38, 276, 363, 426
BfmI	CTRYAG	1 cut(s)	486
BfuAI	ACCTGC	1 cut(s)	606
BglII	AGATCT	1 cut(s)	623
BisI	GCNGC	3 cut(s)	290, 341, 711
BlpI	GCTNAGC	2 cut(s)	606, 611
BlsI	GCNGC	3 cut(s)	291, 342, 712
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	50
BmsI	GCATC	3 cut(s)	223, 649, 850
BpiI	GAAGAC	2 cut(s)	525, 688
BplI	GAGNNNNNCTC	2 cut(s)	613, 645
Bpu10I	CCTNAGC	1 cut(s)	732
Bpu1102I	GCTNAGC	2 cut(s)	606, 611
BpuEI	CTTGAG	2 cut(s)	278, 487
BsaBI	GATNNNNATC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	568, 882
BsaXI	ACNNNNNCTCC	2 cut(s)	659, 689
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 148
Bse1I	ACTGG	2 cut(s)	810, 900
Bse8I	GATNNNNATC	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	568, 882
BseGI	GGATG	1 cut(s)	664
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	2 cut(s)	58, 148
BseMII	CTCAG	5 cut(s)	224, 597, 602, 690, 746
BseNI	ACTGG	2 cut(s)	810, 900
BseRI	GAGGAG	3 cut(s)	44, 401, 680
BseXI	GCAGC	3 cut(s)	276, 327, 722
BseYI	CCCAGC	1 cut(s)	268
BshFI	GGCC	1 cut(s)	357
BshNI	GGYRCC	1 cut(s)	48
BsiHKAI	GWGCWC	3 cut(s)	156, 333, 548
BslI	CCNNNNNNNGG	2 cut(s)	58, 148
BsmAI	GTCTC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	357
Bsp1286I	GDGCHC	3 cut(s)	156, 333, 548
Bsp143I	GATC	3 cut(s)	472, 623, 791
Bsp1720I	GCTNAGC	2 cut(s)	606, 611
Bsp19I	CCATGG	1 cut(s)	568
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	5 cut(s)	223, 598, 603, 691, 745
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	50
BspMI	ACCTGC	1 cut(s)	606
BspPI	GGATC	1 cut(s)	799
BspQI	GCTCTTC	1 cut(s)	883
BspT107I	GGYRCC	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	810, 900
BssECI	CCNNGG	2 cut(s)	568, 882
BssMI	GATC	3 cut(s)	472, 623, 791
BssT1I	CCWWGG	2 cut(s)	568, 882
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	6 cut(s)	95, 190, 303, 377, 774, 883
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	5 cut(s)	210, 606, 611, 699, 732
BstDSI	CCRYGG	1 cut(s)	568
BstF5I	GGATG	1 cut(s)	664
BstKTI	GATC	3 cut(s)	475, 626, 794
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	3 cut(s)	472, 623, 791
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 295, 337
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	3 cut(s)	276, 327, 722
BstV2I	GAAGAC	2 cut(s)	525, 688
BstX2I	RGATCY	2 cut(s)	623, 791
BstYI	RGATCY	2 cut(s)	623, 791
BsuRI	GGCC	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	568
BtsCI	GGATG	1 cut(s)	664
BtsIMutI	CAGTG	2 cut(s)	19, 893
BveI	ACCTGC	1 cut(s)	606
Cac8I	GCNNGC	1 cut(s)	355
CaiI	CAGNNNCTG	1 cut(s)	605
CciI	TCATGA	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	887
CviAII	CATG	3 cut(s)	143, 334, 569
CviQI	GTAC	1 cut(s)	887
DdeI	CTNAG	5 cut(s)	210, 606, 611, 699, 732
DpnI	GATC	3 cut(s)	474, 625, 793
DpnII	GATC	3 cut(s)	472, 623, 791
DraI	TTTAAA	1 cut(s)	528
Eam1104I	CTCTTC	6 cut(s)	95, 190, 303, 377, 774, 883
EarI	CTCTTC	6 cut(s)	95, 190, 303, 377, 774, 883
Ecl136II	GAGCTC	3 cut(s)	154, 331, 546
Eco130I	CCWWGG	2 cut(s)	568, 882
Eco24I	GRGCYC	3 cut(s)	156, 333, 548
Eco53kI	GAGCTC	3 cut(s)	154, 331, 546
Eco57I	CTGAAG	1 cut(s)	432
EcoICRI	GAGCTC	3 cut(s)	154, 331, 546
EcoT14I	CCWWGG	2 cut(s)	568, 882
EcoT38I	GRGCYC	3 cut(s)	156, 333, 548
ErhI	CCWWGG	2 cut(s)	568, 882
FaeI	CATG	3 cut(s)	146, 337, 572
FaiI	YATR	8 cut(s)	91, 144, 243, 335, 345, 499, 570, 800
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FatI	CATG	3 cut(s)	142, 333, 568
FblI	GTMKAC	1 cut(s)	489
Fnu4HI	GCNGC	3 cut(s)	290, 341, 711
FokI	GGATG	1 cut(s)	671
FriOI	GRGCYC	3 cut(s)	156, 333, 548
Fsp4HI	GCNGC	3 cut(s)	290, 341, 711
FspBI	CTAG	4 cut(s)	38, 276, 363, 426
GluI	GCNGC	3 cut(s)	290, 341, 711
GsaI	CCCAGC	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	357
Hin1II	CATG	3 cut(s)	146, 337, 572
HincII	GTYRAC	1 cut(s)	748
HindII	GTYRAC	1 cut(s)	748
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	6 cut(s)	105, 254, 407, 554, 573, 590
HpaI	GTTAAC	1 cut(s)	748
HphI	GGTGA	4 cut(s)	100, 443, 528, 839
Hpy166II	GTNNAC	2 cut(s)	490, 748
Hpy188I	TCNGA	4 cut(s)	259, 328, 412, 680
Hpy188III	TCNNGA	5 cut(s)	212, 334, 426, 453, 734
Hpy8I	GTNNAC	2 cut(s)	490, 748
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	5 cut(s)	71, 146, 193, 343, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 295, 337
HpyF3I	CTNAG	5 cut(s)	210, 606, 611, 699, 732
Hsp92II	CATG	3 cut(s)	146, 337, 572
KspAI	GTTAAC	1 cut(s)	748
Kzo9I	GATC	3 cut(s)	472, 623, 791
LguI	GCTCTTC	1 cut(s)	883
LmnI	GCTCC	1 cut(s)	151
Lsp1109I	GCAGC	3 cut(s)	276, 327, 722
LweI	GCATC	3 cut(s)	223, 649, 850
MaeI	CTAG	4 cut(s)	38, 276, 363, 426
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	3 cut(s)	474, 625, 793
MboI	GATC	3 cut(s)	472, 623, 791
MflI	RGATCY	2 cut(s)	623, 791
MhlI	GDGCHC	3 cut(s)	156, 333, 548
MluCI	AATT	4 cut(s)	161, 671, 718, 760
MlyI	GAGTC	1 cut(s)	548
MroXI	GAANNNNTTC	1 cut(s)	674
MseI	TTAA	3 cut(s)	527, 653, 747
MwoI	GCNNNNNNNGC	3 cut(s)	68, 295, 337
NcoI	CCATGG	1 cut(s)	568
NdeII	GATC	3 cut(s)	472, 623, 791
NlaIII	CATG	3 cut(s)	146, 337, 572
NlaIV	GGNNCC	1 cut(s)	50
PagI	TCATGA	1 cut(s)	333
PciSI	GCTCTTC	1 cut(s)	883
PdmI	GAANNNNTTC	1 cut(s)	674
PfeI	GAWTC	5 cut(s)	105, 254, 407, 573, 590
PkrI	GCNGC	3 cut(s)	291, 342, 712
PleI	GAGTC	1 cut(s)	548
PpsI	GAGTC	1 cut(s)	548
PsiI	TTATAA	1 cut(s)	800
Psp124BI	GAGCTC	3 cut(s)	156, 333, 548
PspFI	CCCAGC	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	50
PspPI	GGNCC	1 cut(s)	356
PstNI	CAGNNNCTG	1 cut(s)	605
PsuI	RGATCY	2 cut(s)	623, 791
RsaI	GTAC	1 cut(s)	888
RsaNI	GTAC	1 cut(s)	887
SacI	GAGCTC	3 cut(s)	156, 333, 548
SapI	GCTCTTC	1 cut(s)	883
SaqAI	TTAA	3 cut(s)	527, 653, 747
SatI	GCNGC	3 cut(s)	290, 341, 711
Sau3AI	GATC	3 cut(s)	472, 623, 791
Sau96I	GGNCC	1 cut(s)	356
SchI	GAGTC	1 cut(s)	548
SduI	GDGCHC	3 cut(s)	156, 333, 548
SfaNI	GCATC	3 cut(s)	223, 649, 850
SfcI	CTRYAG	1 cut(s)	486
SmlI	CTYRAG	2 cut(s)	293, 466
SmoI	CTYRAG	2 cut(s)	293, 466
Sse9I	AATT	4 cut(s)	161, 671, 718, 760
SspMI	CTAG	4 cut(s)	38, 276, 363, 426
SstI	GAGCTC	3 cut(s)	156, 333, 548
StyI	CCWWGG	2 cut(s)	568, 882
TaaI	ACNGT	1 cut(s)	203
TasI	AATT	4 cut(s)	161, 671, 718, 760
TfiI	GAWTC	5 cut(s)	105, 254, 407, 573, 590
Tru1I	TTAA	3 cut(s)	527, 653, 747
Tru9I	TTAA	3 cut(s)	527, 653, 747
TscAI	CASTG	2 cut(s)	19, 900
TseI	GCWGC	3 cut(s)	289, 340, 710
TspRI	CASTG	2 cut(s)	19, 900
XbaI	TCTAGA	1 cut(s)	425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	766
XmiI	GTMKAC	1 cut(s)	489
XmnI	GAANNNNTTC	1 cut(s)	674
XspI	CTAG	4 cut(s)	38, 276, 363, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.