Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005621

Physical Location & Seq

Genomic Coordinates Reverse (-)

6320637 .. 6321782

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g07910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGACGTCTTTGAGTGGATTGGGAATTGGGTTGAGCGTGGTTTTTGGGTCCCTGCTGTTGGCACTTGTTGCAGAGCTTTATTACCTGCTATGGTGGAAGAAGAGAATCACCAACAGAGAGATTGAAGAGGAAGAAGATGATGACTACATCAGCAGCAACCAGGCAAAGGAAATCTTCCAATTTAATTGCTTCAAAAAACCCAATTCTCTTCACACCAGCAGCAATGGAAATTCAAATTCCCATGAGAATTTGAGAGAGCCAGATGTGAATGTCAATGGAAGTAGCGAGCCGGATTTGGAACAGGGTTCTAGAAAGGATTTGCTGTTGAAGCTCAATGGGGAAGAAAATGTGGAAATCTCAGAGCTGATGAGGCTGCACAATCTGGCTGGCCCACCAAGGTTTTTGTTCACAATCAAGGAGGAAGAAAAGGAGGATTTGGAGTCAGAAGATGGGAAATCTAGAAGTAGCAGAAAAGGGTCAAGAACTAGAAGCTTGAGTGATATAATTTTGGCTGTGGACACACCTTTTCTCTCCCCTATGCCCTCCCCATCAGTAAAACCTACACCTTTGAGCAATTTGGAGGCCTACAAGCACCATGGATTCAACCCCCTCTTTGAATCCTCCACGGAGGCTGAGATGAACAGGCTGAAATCTTCACCCCCTCCGAAGTTCAAGTTCTTGAGAGATGCAGAGGAGAAGCTGCTGAGGAGATTGATGGAGGAAGCTGAGAAAAGGGCAGCTAAAAATGGTGGTTCTGCAGCTTCTGCAGCTCAAGATTGTGGGGCTAAAGCTTCAACAAATTCAACAACGACAGCAGAAGAGAGAGAGGGGTCCTTTATAAGACTCGTTGTTGGCAAGAACAAGGAGAATCATCAGAATCCTCCAAGCTCTTCCAAGGTACTTCCACTGGTTTCTTCTCCTACATGTTCAAACCAACTGGACAAGATGGGGCAATTAGATCGATCTGTTAATTACCAAGAGATCTCTGTTAATTCTTTTCTTCTGTTAATTAGTGTTGAAAAAGGATTTTACTTCTGTATTAATCTTAGAGGTTGCAAGGGTTTTTTATCTTCTTCATTACACTGCCATTACTTATATTTTTTTAGCTTGCGGGTTTGTTTAGAGGTGCATGCGTTATTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

382

Amino Acids

42.59

Weight (kDa)

6.06

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59350 AT5G59350 AT5G59350
fragaria_vesca	FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750
malus_domestica	MD00G1137200.v1.1 MD11G1111600.v1.1
prunus_persica	Prupe.6G080000_v2.0.a1 Prupe.6G080000_v2.0.a1
pyrus_communis	pycom03g07910 pycom11g09220 pycom16g22780
rosa_chinensis	RchiOBHm_Chr5g0063921
rosa_laevigata	RLG00000035689
rosa_multiflora	Rmu_sc0000552.1_g000025
rosa_roxburghii	Rroxscaffold_1G00016850
rosa_rugosa	Rorug05G0361100 Rorug05G0361100 Rorug05G0361100
rosa_samantha	Rh5AG419600 Rh5BG435500 Rh5CG458600 Rh5DG448600
rosa_wichuraiana	Rw5G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	839
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	93
AciI	CCGC	1 cut(s)	1111
AcsI	RAATTY	4 cut(s)	229, 235, 247, 799
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	900
AfiI	CCNNNNNNNGG	2 cut(s)	58, 166
AflIII	ACRYGT	1 cut(s)	923
AjnI	CCWGG	1 cut(s)	159
AlwNI	CAGNNNCTG	1 cut(s)	764
AoxI	GGCC	2 cut(s)	388, 582
ApeKI	GCWGC	7 cut(s)	153, 219, 373, 700, 737, 758, 767
ApoI	RAATTY	4 cut(s)	229, 235, 247, 799
AseI	ATTAAT	1 cut(s)	1041
AspS9I	GGNCC	3 cut(s)	48, 389, 831
AsuHPI	GGTGA	2 cut(s)	100, 648
AvaII	GGWCC	2 cut(s)	48, 831
BbvCI	CCTCAGC	1 cut(s)	704
BbvI	GCAGC	7 cut(s)	165, 231, 360, 687, 749, 770, 779
BccI	CCATC	4 cut(s)	443, 556, 709, 940
BcgI	CGANNNNNNTGC	2 cut(s)	941, 975
BciT130I	CCWGG	1 cut(s)	161
BfaI	CTAG	3 cut(s)	309, 459, 486
BfmI	CTRYAG	2 cut(s)	756, 765
BfuAI	ACCTGC	1 cut(s)	93
BglII	AGATCT	1 cut(s)	981
BisI	GCNGC	7 cut(s)	154, 220, 374, 701, 738, 759, 768
BlsI	GCNGC	7 cut(s)	155, 221, 375, 702, 739, 760, 769
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	2 cut(s)	48, 831
BmgT120I	GGNCC	3 cut(s)	48, 389, 831
BmiI	GGNNCC	3 cut(s)	49, 50, 832
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	676
Bpu10I	CCTNAGC	1 cut(s)	704
BpuEI	CTTGAG	3 cut(s)	514, 700, 756
Bsa29I	ATCGAT	1 cut(s)	961
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	395, 595, 624, 894
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 166
Bse1I	ACTGG	2 cut(s)	912, 942
Bse3DI	GCAATG	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	161
BseCI	ATCGAT	1 cut(s)	961
BseDI	CCNNGG	4 cut(s)	395, 595, 624, 894
BseLI	CCNNNNNNNGG	2 cut(s)	58, 166
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	4 cut(s)	372, 624, 695, 717
BseNI	ACTGG	2 cut(s)	912, 942
BseRI	GAGGAG	2 cut(s)	707, 721
BseXI	GCAGC	7 cut(s)	165, 231, 360, 687, 749, 770, 779
BsgI	GTGCAG	1 cut(s)	359
BshFI	GGCC	2 cut(s)	390, 584
BshVI	ATCGAT	1 cut(s)	961
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	58, 166
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	390, 584
Bsp143I	GATC	3 cut(s)	958, 962, 981
Bsp19I	CCATGG	1 cut(s)	595
BspACI	CCGC	1 cut(s)	1111
BspANI	GGCC	2 cut(s)	390, 584
BspCNI	CTCAG	4 cut(s)	371, 625, 696, 718
BspDI	ATCGAT	1 cut(s)	961
BspLI	GGNNCC	3 cut(s)	49, 50, 832
BspMAI	CTGCAG	2 cut(s)	760, 769
BspMI	ACCTGC	1 cut(s)	93
BspQI	GCTCTTC	1 cut(s)	895
BsrDI	GCAATG	1 cut(s)	229
BsrI	ACTGG	2 cut(s)	912, 942
BssECI	CCNNGG	4 cut(s)	395, 595, 624, 894
BssMI	GATC	3 cut(s)	958, 962, 981
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	3 cut(s)	395, 595, 894
Bst2UI	CCWGG	1 cut(s)	161
Bst6I	CTCTTC	5 cut(s)	95, 120, 213, 813, 895
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	2 cut(s)	68, 764
BstC8I	GCNNGC	4 cut(s)	287, 388, 1109, 1131
BstDEI	CTNAG	5 cut(s)	358, 633, 704, 726, 1046
BstDSI	CCRYGG	2 cut(s)	595, 624
BstKTI	GATC	3 cut(s)	961, 965, 984
BstMBI	GATC	3 cut(s)	958, 962, 981
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 328, 370, 764, 767
BstNI	CCWGG	1 cut(s)	161
BstNSI	RCATGY	2 cut(s)	927, 1133
BstSCI	CCNGG	1 cut(s)	159
BstSFI	CTRYAG	2 cut(s)	756, 765
BstV1I	GCAGC	7 cut(s)	165, 231, 360, 687, 749, 770, 779
BstX2I	RGATCY	1 cut(s)	981
BstYI	RGATCY	1 cut(s)	981
Bsu15I	ATCGAT	1 cut(s)	961
BsuRI	GGCC	2 cut(s)	390, 584
BsuTUI	ATCGAT	1 cut(s)	961
BtgI	CCRYGG	2 cut(s)	595, 624
BtsI	GCAGTG	1 cut(s)	1081
BtsIMutI	CAGTG	2 cut(s)	905, 1081
BveI	ACCTGC	1 cut(s)	93
Cac8I	GCNNGC	4 cut(s)	287, 388, 1109, 1131
CaiI	CAGNNNCTG	1 cut(s)	764
Cfr13I	GGNCC	3 cut(s)	48, 389, 831
ClaI	ATCGAT	1 cut(s)	961
Csp6I	GTAC	1 cut(s)	899
CviAII	CATG	4 cut(s)	242, 596, 924, 1130
CviQI	GTAC	1 cut(s)	899
DdeI	CTNAG	5 cut(s)	358, 633, 704, 726, 1046
DpnI	GATC	3 cut(s)	960, 964, 983
DpnII	GATC	3 cut(s)	958, 962, 981
Eam1104I	CTCTTC	5 cut(s)	95, 120, 213, 813, 895
EarI	CTCTTC	5 cut(s)	95, 120, 213, 813, 895
Eco130I	CCWWGG	3 cut(s)	395, 595, 894
Eco147I	AGGCCT	1 cut(s)	584
Eco47I	GGWCC	2 cut(s)	48, 831
EcoO109I	RGGNCCY	2 cut(s)	48, 831
EcoRII	CCWGG	1 cut(s)	159
EcoT14I	CCWWGG	3 cut(s)	395, 595, 894
ErhI	CCWWGG	3 cut(s)	395, 595, 894
FaeI	CATG	4 cut(s)	245, 599, 927, 1133
FaiI	YATR	9 cut(s)	91, 243, 503, 539, 597, 839, 925, 1096, 1131
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	4 cut(s)	241, 595, 923, 1129
FauI	CCCGC	1 cut(s)	1104
Fnu4HI	GCNGC	7 cut(s)	154, 220, 374, 701, 738, 759, 768
Fsp4HI	GCNGC	7 cut(s)	154, 220, 374, 701, 738, 759, 768
FspBI	CTAG	3 cut(s)	309, 459, 486
GluI	GCNGC	7 cut(s)	154, 220, 374, 701, 738, 759, 768
HaeIII	GGCC	2 cut(s)	390, 584
HapII	CCGG	1 cut(s)	290
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	245, 599, 927, 1133
HindIII	AAGCTT	2 cut(s)	490, 789
HinfI	GANTC	7 cut(s)	105, 440, 600, 617, 843, 868, 877
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	2 cut(s)	100, 648
Hpy166II	GTNNAC	2 cut(s)	408, 517
Hpy188I	TCNGA	4 cut(s)	361, 445, 666, 876
Hpy188III	TCNNGA	5 cut(s)	309, 459, 480, 679, 773
Hpy8I	GTNNAC	2 cut(s)	408, 517
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	7 cut(s)	71, 376, 689, 758, 767, 1056, 1129
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 328, 370, 764, 767
HpyF3I	CTNAG	5 cut(s)	358, 633, 704, 726, 1046
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	245, 599, 927, 1133
KflI	GGGWCCC	1 cut(s)	48
Kzo9I	GATC	3 cut(s)	958, 962, 981
LguI	GCTCTTC	1 cut(s)	895
Lsp1109I	GCAGC	7 cut(s)	165, 231, 360, 687, 749, 770, 779
LweI	GCATC	1 cut(s)	676
MaeI	CTAG	3 cut(s)	309, 459, 486
MaeII	ACGT	1 cut(s)	5
MalI	GATC	3 cut(s)	960, 964, 983
MboI	GATC	3 cut(s)	958, 962, 981
MflI	RGATCY	1 cut(s)	981
MlyI	GAGTC	2 cut(s)	449, 837
MseI	TTAA	5 cut(s)	183, 969, 990, 1007, 1041
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	5 cut(s)	68, 328, 370, 764, 767
NcoI	CCATGG	1 cut(s)	595
NdeII	GATC	3 cut(s)	958, 962, 981
NlaIII	CATG	4 cut(s)	245, 599, 927, 1133
NlaIV	GGNNCC	3 cut(s)	49, 50, 832
NspI	RCATGY	2 cut(s)	927, 1133
PaeI	GCATGC	1 cut(s)	1133
PceI	AGGCCT	1 cut(s)	584
PciI	ACATGT	1 cut(s)	923
PciSI	GCTCTTC	1 cut(s)	895
PfeI	GAWTC	5 cut(s)	105, 600, 617, 868, 877
PkrI	GCNGC	7 cut(s)	155, 221, 375, 702, 739, 760, 769
PleI	GAGTC	2 cut(s)	448, 837
PpsI	GAGTC	2 cut(s)	448, 837
PpuMI	RGGWCCY	2 cut(s)	48, 831
PscI	ACATGT	1 cut(s)	923
PshBI	ATTAAT	1 cut(s)	1041
PsiI	TTATAA	1 cut(s)	839
Psp5II	RGGWCCY	2 cut(s)	48, 831
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	3 cut(s)	49, 50, 832
PspPI	GGNCC	3 cut(s)	48, 389, 831
PspPPI	RGGWCCY	2 cut(s)	48, 831
PstI	CTGCAG	2 cut(s)	760, 769
PstNI	CAGNNNCTG	1 cut(s)	764
PsuI	RGATCY	1 cut(s)	981
RsaI	GTAC	1 cut(s)	900
RsaNI	GTAC	1 cut(s)	899
SapI	GCTCTTC	1 cut(s)	895
SaqAI	TTAA	5 cut(s)	183, 969, 990, 1007, 1041
SatI	GCNGC	7 cut(s)	154, 220, 374, 701, 738, 759, 768
Sau3AI	GATC	3 cut(s)	958, 962, 981
Sau96I	GGNCC	3 cut(s)	48, 389, 831
SchI	GAGTC	2 cut(s)	449, 837
ScrFI	CCNGG	1 cut(s)	161
SfaNI	GCATC	1 cut(s)	676
SfcI	CTRYAG	2 cut(s)	756, 765
SinI	GGWCC	2 cut(s)	48, 831
SmlI	CTYRAG	3 cut(s)	493, 679, 771
SmoI	CTYRAG	3 cut(s)	493, 679, 771
SphI	GCATGC	1 cut(s)	1133
SseBI	AGGCCT	1 cut(s)	584
SsiI	CCGC	1 cut(s)	1111
SspMI	CTAG	3 cut(s)	309, 459, 486
StuI	AGGCCT	1 cut(s)	584
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	3 cut(s)	395, 595, 894
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	961
TfiI	GAWTC	5 cut(s)	105, 600, 617, 868, 877
Tru1I	TTAA	5 cut(s)	183, 969, 990, 1007, 1041
Tru9I	TTAA	5 cut(s)	183, 969, 990, 1007, 1041
TscAI	CASTG	2 cut(s)	912, 1088
TseI	GCWGC	7 cut(s)	153, 219, 373, 700, 737, 758, 767
TspDTI	ATGAA	2 cut(s)	653, 1065
TspGWI	ACGGA	1 cut(s)	641
TspRI	CASTG	2 cut(s)	912, 1088
VpaK11BI	GGWCC	2 cut(s)	48, 831
VspI	ATTAAT	1 cut(s)	1041
XapI	RAATTY	4 cut(s)	229, 235, 247, 799
XbaI	TCTAGA	2 cut(s)	308, 458
XceI	RCATGY	2 cut(s)	927, 1133
XspI	CTAG	3 cut(s)	309, 459, 486
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.