Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005621

Physical Location & Seq

Genomic Coordinates Reverse (-)

29798059 .. 29799603

Gene Structure 1545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1137200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGACGTCTTTGAGTGGATTGGGAATTGGGTTGAGCGTGGTTTTTGGGTGCCTGCTGTTGGCACTTGTTGCAGAGCTTTACTACCTGCTATGGTGGAAGAAGAGAGTCACCAACAGAGAGATTGAGGAGGAAGAAGATGATGACTACATCAGCAGCAACCATGCAAAGGAAATCTTCCAATTTAATTGCTTCAAAAAACCCAATTCTCTTCACACCAGCAGCAATCGAAATTCAAATTCCCATGAGAATTTGAGAGAGCCAGATGTGAATGTCAATGGAAGTAGCGAGCCGGATTTGGAACAGGGTTCTAGAAAGGATTTGCTGTTGAAGCTCAATGGGGAAGAAAATGTGGAAATCTCAGAGCTGATGAGGCTGCACAATCTGGCTGGCCCACCAAGGTTTTTGTTCACAATCAAGGAGGAAGAAAAGGAGGATTTGGAATCAGAAGATGGGAAATCTAAAAGTAGCAGAAAAGGGTCAAGAACTAGAAGCTTGAGTGATATAATTTTGGCTGTGGACACACCTTTTCTCTCCCCTATGCCCTCCCCATCAGTAAAACTTTCACCTTTGAGCAATTTGGAGGCCTACAAACACCATGGATTCAACCCCCTCTTTGAATCCTCCACGGAGGCTGAGATGAACAGGCTGAAATCTTCACCCCCTCCAAAGTTCAAGTTCTTGAGAGATGCAGAGGAGAAGCTGCTGAGGAGATTGATGGAGGAAGCTGAGAAAAGGGCAGCTAAAAATGGCGGTACTGGAGCTTCTGCAGCTCAAGATTGTGGGGCTAAAGCTTCAACAAATTCAACAATGACAGCAGAAGAGAGAGAGGGGTCTTTTATAAGACTCATTGTTGGCAACAACAAGGAGAATCATCAGAATCCTCCAAGCTCTTCCAAGGTACTTCCACTGGTTTCTTCTCCTGCATGTTCAACCCAACTTGACAAGATGGGGCAATTAGATCTCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

35.81

Weight (kDa)

5.66

Isoelectric Point (pI)

52.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59350 AT5G59350 AT5G59350
fragaria_vesca	FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750 FvH4_3g35750
malus_domestica	MD00G1137200.v1.1 MD11G1111600.v1.1
prunus_persica	Prupe.6G080000_v2.0.a1 Prupe.6G080000_v2.0.a1
pyrus_communis	pycom03g07910 pycom11g09220 pycom16g22780
rosa_chinensis	RchiOBHm_Chr5g0063921
rosa_laevigata	RLG00000035689
rosa_multiflora	Rmu_sc0000552.1_g000025
rosa_roxburghii	Rroxscaffold_1G00016850
rosa_rugosa	Rorug05G0361100 Rorug05G0361100 Rorug05G0361100
rosa_samantha	Rh5AG419600 Rh5BG435500 Rh5CG458600 Rh5DG448600
rosa_wichuraiana	Rw5G039440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	839
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	48
AciI	CCGC	1 cut(s)	750
AcsI	RAATTY	4 cut(s)	229, 235, 247, 799
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	754, 900
AfiI	CCNNNNNNNGG	2 cut(s)	58, 166
AgsI	TTSAA	9 cut(s)	193, 234, 328, 604, 617, 673, 795, 804, 930
AoxI	GGCC	2 cut(s)	388, 582
ApeKI	GCWGC	6 cut(s)	153, 219, 373, 700, 737, 767
ApoI	RAATTY	4 cut(s)	229, 235, 247, 799
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	3 cut(s)	100, 555, 648
BanI	GGYRCC	1 cut(s)	48
BarI	GAAGNNNNNNTAC	2 cut(s)	745, 777
BbvCI	CCTCAGC	1 cut(s)	704
BbvI	GCAGC	6 cut(s)	165, 231, 360, 687, 749, 779
BccI	CCATC	4 cut(s)	443, 556, 709, 940
BfaI	CTAG	2 cut(s)	309, 486
BfmI	CTRYAG	1 cut(s)	765
BfuAI	ACCTGC	1 cut(s)	93
BglII	AGATCT	1 cut(s)	958
BisI	GCNGC	6 cut(s)	154, 220, 374, 701, 738, 768
BlsI	GCNGC	6 cut(s)	155, 221, 375, 702, 739, 769
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	50
BmsI	GCATC	1 cut(s)	676
BpmI	CTGGAG	1 cut(s)	777
Bpu10I	CCTNAGC	1 cut(s)	704
BpuEI	CTTGAG	3 cut(s)	514, 700, 756
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	395, 595, 624, 894
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 166
Bse1I	ACTGG	2 cut(s)	760, 912
BseDI	CCNNGG	4 cut(s)	395, 595, 624, 894
BseLI	CCNNNNNNNGG	2 cut(s)	58, 166
BseMII	CTCAG	4 cut(s)	372, 624, 695, 717
BseNI	ACTGG	2 cut(s)	760, 912
BseRI	GAGGAG	3 cut(s)	140, 707, 721
BseXI	GCAGC	6 cut(s)	165, 231, 360, 687, 749, 779
BsgI	GTGCAG	1 cut(s)	359
BshFI	GGCC	2 cut(s)	390, 584
BshNI	GGYRCC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	290
BslI	CCNNNNNNNGG	2 cut(s)	58, 166
BsnI	GGCC	2 cut(s)	390, 584
Bsp143I	GATC	1 cut(s)	958
Bsp19I	CCATGG	1 cut(s)	595
BspACI	CCGC	1 cut(s)	750
BspANI	GGCC	2 cut(s)	390, 584
BspCNI	CTCAG	4 cut(s)	371, 625, 696, 718
BspLI	GGNNCC	1 cut(s)	50
BspMAI	CTGCAG	1 cut(s)	769
BspMI	ACCTGC	1 cut(s)	93
BspQI	GCTCTTC	1 cut(s)	895
BspT107I	GGYRCC	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	760, 912
BssECI	CCNNGG	4 cut(s)	395, 595, 624, 894
BssMI	GATC	1 cut(s)	958
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	3 cut(s)	395, 595, 894
Bst6I	CTCTTC	4 cut(s)	95, 213, 813, 895
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstC8I	GCNNGC	3 cut(s)	53, 287, 388
BstDEI	CTNAG	4 cut(s)	358, 633, 704, 726
BstDSI	CCRYGG	2 cut(s)	595, 624
BstKTI	GATC	1 cut(s)	961
BstMBI	GATC	1 cut(s)	958
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 328, 370, 767
BstNSI	RCATGY	1 cut(s)	927
BstSFI	CTRYAG	1 cut(s)	765
BstV1I	GCAGC	6 cut(s)	165, 231, 360, 687, 749, 779
BstX2I	RGATCY	1 cut(s)	958
BstYI	RGATCY	1 cut(s)	958
BsuRI	GGCC	2 cut(s)	390, 584
BtgI	CCRYGG	2 cut(s)	595, 624
BtsIMutI	CAGTG	1 cut(s)	905
BveI	ACCTGC	1 cut(s)	93
Cac8I	GCNNGC	3 cut(s)	53, 287, 388
Cfr13I	GGNCC	1 cut(s)	389
Csp6I	GTAC	2 cut(s)	753, 899
CviAII	CATG	4 cut(s)	161, 242, 596, 924
CviQI	GTAC	2 cut(s)	753, 899
DdeI	CTNAG	4 cut(s)	358, 633, 704, 726
DpnI	GATC	1 cut(s)	960
DpnII	GATC	1 cut(s)	958
Eam1104I	CTCTTC	4 cut(s)	95, 213, 813, 895
EarI	CTCTTC	4 cut(s)	95, 213, 813, 895
Eco130I	CCWWGG	3 cut(s)	395, 595, 894
Eco147I	AGGCCT	1 cut(s)	584
EcoT14I	CCWWGG	3 cut(s)	395, 595, 894
ErhI	CCWWGG	3 cut(s)	395, 595, 894
FaeI	CATG	4 cut(s)	164, 245, 599, 927
FaiI	YATR	8 cut(s)	91, 162, 243, 503, 539, 597, 839, 925
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FatI	CATG	4 cut(s)	160, 241, 595, 923
Fnu4HI	GCNGC	6 cut(s)	154, 220, 374, 701, 738, 768
Fsp4HI	GCNGC	6 cut(s)	154, 220, 374, 701, 738, 768
FspBI	CTAG	2 cut(s)	309, 486
GluI	GCNGC	6 cut(s)	154, 220, 374, 701, 738, 768
GsuI	CTGGAG	1 cut(s)	777
HaeIII	GGCC	2 cut(s)	390, 584
HapII	CCGG	1 cut(s)	290
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	164, 245, 599, 927
HindIII	AAGCTT	2 cut(s)	490, 789
HinfI	GANTC	7 cut(s)	105, 440, 600, 617, 843, 868, 877
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	3 cut(s)	100, 555, 648
Hpy166II	GTNNAC	2 cut(s)	408, 517
Hpy188I	TCNGA	3 cut(s)	361, 445, 876
Hpy188III	TCNNGA	4 cut(s)	309, 480, 679, 773
Hpy8I	GTNNAC	2 cut(s)	408, 517
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	6 cut(s)	71, 164, 376, 689, 767, 923
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 328, 370, 767
HpyF3I	CTNAG	4 cut(s)	358, 633, 704, 726
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	164, 245, 599, 927
Kzo9I	GATC	1 cut(s)	958
LguI	GCTCTTC	1 cut(s)	895
LmnI	GCTCC	1 cut(s)	758
Lsp1109I	GCAGC	6 cut(s)	165, 231, 360, 687, 749, 779
LweI	GCATC	1 cut(s)	676
MaeI	CTAG	2 cut(s)	309, 486
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	1 cut(s)	960
MboI	GATC	1 cut(s)	958
MflI	RGATCY	1 cut(s)	958
MlyI	GAGTC	2 cut(s)	114, 837
MseI	TTAA	2 cut(s)	183, 967
MspI	CCGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	4 cut(s)	68, 328, 370, 767
NcoI	CCATGG	1 cut(s)	595
NdeII	GATC	1 cut(s)	958
NlaIII	CATG	4 cut(s)	164, 245, 599, 927
NlaIV	GGNNCC	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	106
NspI	RCATGY	1 cut(s)	927
PceI	AGGCCT	1 cut(s)	584
PciSI	GCTCTTC	1 cut(s)	895
PfeI	GAWTC	5 cut(s)	440, 600, 617, 868, 877
PkrI	GCNGC	6 cut(s)	155, 221, 375, 702, 739, 769
PleI	GAGTC	2 cut(s)	113, 837
PpsI	GAGTC	2 cut(s)	113, 837
PsiI	TTATAA	1 cut(s)	839
PspN4I	GGNNCC	1 cut(s)	50
PspPI	GGNCC	1 cut(s)	389
PstI	CTGCAG	1 cut(s)	769
PsuI	RGATCY	1 cut(s)	958
RsaI	GTAC	2 cut(s)	754, 900
RsaNI	GTAC	2 cut(s)	753, 899
SapI	GCTCTTC	1 cut(s)	895
SaqAI	TTAA	2 cut(s)	183, 967
SatI	GCNGC	6 cut(s)	154, 220, 374, 701, 738, 768
Sau3AI	GATC	1 cut(s)	958
Sau96I	GGNCC	1 cut(s)	389
SchI	GAGTC	2 cut(s)	114, 837
SfaNI	GCATC	1 cut(s)	676
SfcI	CTRYAG	1 cut(s)	765
SmlI	CTYRAG	3 cut(s)	493, 679, 771
SmoI	CTYRAG	3 cut(s)	493, 679, 771
SseBI	AGGCCT	1 cut(s)	584
SsiI	CCGC	1 cut(s)	750
SspMI	CTAG	2 cut(s)	309, 486
StuI	AGGCCT	1 cut(s)	584
StyI	CCWWGG	3 cut(s)	395, 595, 894
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	226
TfiI	GAWTC	5 cut(s)	440, 600, 617, 868, 877
Tru1I	TTAA	2 cut(s)	183, 967
Tru9I	TTAA	2 cut(s)	183, 967
TscAI	CASTG	1 cut(s)	912
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	6 cut(s)	153, 219, 373, 700, 737, 767
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	653
TspGWI	ACGGA	1 cut(s)	641
TspRI	CASTG	1 cut(s)	912
XapI	RAATTY	4 cut(s)	229, 235, 247, 799
XbaI	TCTAGA	1 cut(s)	308
XceI	RCATGY	1 cut(s)	927
XspI	CTAG	2 cut(s)	309, 486
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.